Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HRU	34980	2024-09-23	2022-12-16	3.9	4.26	4.10	4.1	0.006	0.98	0.0	0.05	17.40	0.01	2.000	22.29	0.38	3.9	96.1	0.0	-1.28	0.75	0.69	0.45	4.0	0.003	0.82	0.0	0.05	17.69	0.00	2.520	15.24	3.23	4.2	95.8	0.0	-0.34	0.69	0.75	0.69	0.45	4870	597	1	0	0	0	0	logfile
✔	5iS0	8119	2024-09-26	2016-03-15	3.43	3.36	3.37	3.2	0.015	1.24	0.0	0.06	12.94	0.01	1.283	5.42	0.00	10.1	89.7	0.3	-5.27	0.63	0.73	2.61	3.2	0.003	0.75	0.0	0.04	15.89	0.00	2.503	10.15	2.25	5.6	94.4	0.0	0.01	1.47	0.62	0.81	2.18	11808	1576	8	0	4	0	0	logfile
✔	7Y7i	33666	2024-09-26	2022-06-22	3.42	3.09	3.34	3.3	0.004	0.57	0.0	0.04	28.76	0.00	2.234	8.91	0.15	1.9	98.1	0.0	2.18	0.64	0.77	1.32	3.3	0.003	0.56	0.0	0.04	28.59	0.00	2.476	7.63	2.04	2.0	98.0	0.0	2.55	0.66	0.67	0.80	2.00	12445	824	12	286	0	0	0	logfile
✔	6LFM	0877	2024-09-26	2019-12-03	3.5	3.89	—	3.9	0.012	1.14	0.0	0.07	15.32	0.01	2.264	7.38	0.27	8.3	91.7	0.0	-5.60	0.63	0.81	2.29	4.0	0.004	0.76	0.0	0.04	16.75	0.00	2.511	11.46	4.01	5.3	94.7	0.0	-1.69	0.64	0.62	0.80	1.74	10181	1302	8	0	1	0	0	logfile
✔	8CQD	16796	2024-09-25	2023-03-05	3.54	3.76	3.56	3.8	0.005	0.61	0.0	0.04	9.17	0.00	2.223	3.60	0.00	1.9	98.1	0.0	2.57	0.57	0.73	0.67	3.8	0.004	0.61	0.0	0.04	14.59	0.00	2.612	8.25	2.17	0.9	99.1	0.0	1.96	0.67	0.59	0.75	0.67	10828	1364	12	0	6	0	0	logfile
✔	7YL0	33901	2024-09-23	2022-07-25	3.2	3.47	3.15	3.4	0.015	2.44	0.0	0.11	14.13	0.01	2.515	18.86	0.00	5.0	95.0	0.0	-4.14	0.41	0.74	4.76	3.4	0.004	0.75	0.0	0.04	16.35	0.00	2.536	5.88	2.47	9.7	90.3	0.0	-4.54	1.67	0.44	0.78	5.58	2958	396	12	0	0	0	0	logfile
✔	6VYK	21462	2024-09-27	2020-02-27	3.2	3.31	—	3.3	0.010	1.74	0.0	0.07	15.96	0.00	2.122	3.09	0.00	4.5	95.5	0.0	-3.22	0.72	0.81	3.40	3.3	0.004	1.32	0.0	0.05	15.88	0.00	2.570	7.13	1.79	2.9	97.1	0.0	0.40	2.52	0.71	0.85	3.29	14623	1869	12	0	7	0	0	logfile
✔	6VXJ	21440	2024-09-24	2020-02-22	4.1	4.12	—	4.1	0.007	1.02	0.0	0.05	16.52	0.01	2.251	6.79	3.32	9.5	90.5	0.0	-5.74	0.57	0.78	—	4.1	0.006	0.82	0.0	0.05	13.85	0.00	2.507	13.08	0.00	9.0	91.0	0.0	-2.11	0.71	0.58	0.79	—	8895	1132	4	0	3	0	0	logfile
✔	3LoS	5137	2024-09-26	2010-02-04	4.3	2.98	—	3.0	0.008	2.44	224.0	0.19	19.87	0.01	2.259	87.93	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.004	1.20	0.0	0.05	15.74	0.01	2.369	22.62	0.00	19.4	77.4	3.2	-4.64	1.35	0.61	0.54	—	63712	8512	16	0	0	0	0	logfile
✔	6FF4	4255	2024-09-29	2018-01-03	3.4	3.67	—	3.6	0.011	1.31	0.0	0.11	15.31	0.01	1.176	7.18	1.26	12.9	86.8	0.3	-4.84	0.75	0.79	2.77	3.6	0.003	0.76	0.0	0.04	17.18	0.00	1.914	10.93	3.01	10.8	89.2	0.0	-1.96	0.70	0.75	0.82	1.67	72392	8220	35	273	16	0	0	logfile
✔	6VL5	21230	2024-09-27	2020-01-22	4.5	4.57	4.20	4.4	0.019	1.72	0.0	0.10	11.99	0.01	2.242	0.64	0.20	1.2	98.8	0.0	0.88	0.79	0.80	—	4.4	0.012	1.26	0.0	0.06	12.74	0.01	2.021	27.67	0.00	4.8	94.8	0.4	-1.11	0.96	0.78	0.79	—	15039	1719	42	0	105	0	0	logfile
✔	7CMV	30411	2024-09-24	2020-07-29	2.7	2.91	—	2.9	0.005	0.49	0.0	0.04	12.44	0.00	2.032	3.90	0.00	1.5	98.5	0.0	2.95	0.61	0.79	2.85	2.9	0.003	0.59	0.0	0.04	15.84	0.00	2.388	4.35	2.70	2.1	97.9	0.0	1.71	1.11	0.64	0.84	3.44	8775	1123	6	0	1	0	0	logfile
✔	7QHA	13968	2024-09-23	2021-12-11	2.97	4.06	3.00	3.8	0.003	0.59	0.0	0.04	12.23	0.00	2.268	6.68	0.00	2.7	97.3	0.0	1.85	0.69	0.86	2.37	3.8	0.004	0.83	0.0	0.04	15.38	0.00	2.271	7.14	2.11	2.5	97.5	0.0	1.94	0.93	0.69	0.86	2.27	5282	684	4	0	2	0	0	logfile
✔	7TNX	26022	2024-09-23	2022-01-22	3.54	3.76	—	3.8	0.011	1.08	0.0	0.06	15.46	0.00	2.247	6.37	0.17	7.7	92.2	0.2	-2.75	0.70	0.80	2.39	3.8	0.003	0.61	0.0	0.04	17.16	0.00	2.503	6.28	3.77	7.7	92.3	0.0	-0.04	0.47	0.66	0.78	2.59	5753	647	4	23	2	0	0	logfile
✔	8JJ5	36340	2024-09-26	2023-05-29	3.5	3.74	3.51	3.7	0.021	2.18	39.0	0.19	17.07	0.02	2.397	1.75	1.22	8.9	91.0	0.1	-2.93	0.38	0.61	1.08	3.7	0.004	0.72	0.0	0.04	16.13	0.00	2.171	13.96	1.49	5.4	94.6	0.0	-0.36	1.07	0.40	0.64	0.81	13594	866	10	0	14	0	6679	logfile
✔	7S67	24852	2024-09-29	2021-09-13	3.8	3.64	3.80	3.9	0.013	1.39	0.0	0.07	12.76	0.01	1.815	5.58	0.00	1.5	98.5	0.0	0.25	0.70	0.73	2.10	3.8	0.003	0.75	0.0	0.05	16.47	0.00	1.926	11.28	2.39	1.9	98.1	0.0	0.15	2.48	0.71	0.80	1.47	23058	2892	12	0	24	0	0	logfile
✘	7X6Q	33025	2024-09-27	2022-03-08	4.5	4.41	4.61	4.3	0.009	0.73	0.0	0.06	9.96	0.00	2.197	0.93	0.01	3.2	96.7	0.2	-0.87	0.78	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64472	8440	16	0	0	0	0	logfile
✔	6Mi7	9125	2024-09-24	2018-09-19	4.2	4.24	—	4.2	0.006	1.19	0.0	0.06	12.82	0.01	2.053	7.37	0.38	9.3	90.7	0.0	-5.97	0.58	0.80	—	4.2	0.003	0.80	0.0	0.04	13.87	0.00	2.369	8.71	0.00	6.1	93.9	0.0	-1.86	1.96	0.59	0.80	—	7285	931	6	0	1	0	0	logfile
✔	7JV5	22493	2024-09-24	2020-08-20	3.0	3.90	—	3.9	0.005	1.09	0.0	0.07	9.42	0.01	2.240	4.66	0.00	3.7	96.3	0.0	-3.02	0.54	0.74	2.06	3.9	0.003	0.61	0.0	0.04	13.26	0.00	2.452	6.00	1.78	2.3	97.7	0.0	1.18	0.70	0.45	0.66	2.09	8531	1044	6	0	13	0	0	logfile
✔	6CAA	7441	2024-09-24	2018-01-29	3.9	3.97	—	3.9	0.009	1.33	0.0	0.07	12.41	0.01	1.886	9.42	0.00	13.0	87.0	0.0	-6.23	0.64	0.79	1.91	3.9	0.011	1.06	1.0	0.05	15.86	0.01	1.849	16.43	4.19	10.8	89.2	0.0	-1.34	2.11	0.66	0.79	1.34	7508	954	2	0	0	0	0	logfile

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