Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8A9B	15275	2024-09-24	2022-06-28	4.0	4.28	3.95	4.1	0.004	0.88	0.0	0.05	14.89	0.00	2.113	20.52	0.00	14.8	84.2	1.0	-3.17	0.67	0.58	—	4.1	0.003	0.78	0.0	0.04	17.18	0.00	2.479	15.99	2.43	13.4	86.1	0.5	-2.92	0.59	0.71	0.63	—	6386	809	1	0	0	0	0	logfile
✔	7WJ5	32543	2024-09-24	2022-01-05	3.72	3.15	—	3.2	0.004	0.55	0.0	0.04	10.79	0.00	2.173	7.85	3.05	4.1	95.9	0.0	1.05	0.62	0.80	2.62	3.2	0.003	0.61	0.0	0.04	14.33	0.00	2.514	8.43	3.27	3.2	96.8	0.0	0.79	0.38	0.63	0.80	2.19	8660	1129	6	0	0	0	0	logfile
✔	7FB3	31513	2024-09-29	2021-07-08	3.1	3.73	—	3.7	0.003	0.65	0.0	0.04	14.25	0.00	2.114	9.15	0.23	8.2	91.8	0.0	-4.11	0.74	0.81	2.06	3.6	0.003	0.62	0.0	0.04	15.97	0.00	2.468	6.81	1.95	6.2	93.8	0.0	-1.46	1.43	0.72	0.81	1.94	22920	2936	3	0	0	0	0	logfile
✔	7ZNN	14812	2024-09-27	2022-04-21	4.8	7.93	6.02	4.7	0.003	0.80	0.0	0.04	14.16	0.00	2.316	6.53	0.93	7.2	92.6	0.2	-4.19	0.87	0.70	—	4.7	0.004	0.75	0.0	0.04	13.46	0.00	2.389	26.04	0.00	5.5	94.4	0.1	-1.74	2.41	0.88	0.71	—	14606	1814	4	0	1	0	0	logfile
✔	7USF	26737	2024-09-28	2022-04-25	3.5	4.05	3.59	3.9	0.003	0.55	0.0	0.04	19.62	0.00	2.017	10.80	0.12	2.5	97.5	0.0	0.79	0.79	0.78	2.43	3.9	0.004	1.00	4.0	0.05	20.84	0.01	2.109	10.22	1.81	3.1	96.8	0.1	0.87	0.55	0.81	0.82	1.89	18988	1984	22	152	10	0	0	logfile
✔	6VAK	21141	2024-09-29	2019-12-17	3.48	3.85	—	3.8	0.004	0.77	0.0	0.04	14.36	0.00	2.029	7.47	2.96	8.2	91.8	0.0	-2.80	0.73	0.81	3.28	3.8	0.003	0.60	0.0	0.03	16.46	0.00	2.578	3.80	2.28	6.0	94.0	0.0	2.59	0.59	0.72	0.83	2.76	22781	2992	11	0	0	0	0	logfile
✔	7K65	22689	2024-09-24	2020-09-18	3.4	3.95	3.54	3.9	0.006	0.80	0.0	0.06	13.57	0.00	2.213	8.32	0.00	2.9	97.1	0.0	-1.91	0.54	0.76	2.44	3.9	0.004	0.68	0.0	0.04	15.07	0.00	2.481	9.95	3.46	5.7	94.3	0.0	0.87	0.53	0.53	0.76	1.69	8796	1120	4	0	11	0	0	logfile
✘	6WKW	21811	2024-09-25	2020-04-17	3.6	3.75	—	3.6	0.017	1.19	0.0	0.06	15.79	0.00	2.066	12.81	0.52	12.6	87.3	0.2	-5.89	0.87	0.91	3.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10037	1319	8	0	4	0	0	logfile
✔	7Z14	14440	2024-09-27	2022-02-24	3.15	3.57	—	3.5	0.004	0.72	1.0	0.05	14.57	0.00	2.128	10.06	0.00	4.4	95.6	0.0	-0.09	0.62	0.79	3.59	3.5	0.003	0.64	2.0	0.04	15.03	0.00	2.533	8.51	1.58	3.5	96.5	0.0	0.35	1.21	0.64	0.82	3.23	15856	1913	13	0	28	0	0	logfile
✔	5U1D	8482	2024-09-24	2016-11-28	3.97	4.06	—	4.3	0.007	1.17	0.0	0.05	12.05	0.00	2.452	0.07	0.84	5.7	94.1	0.2	-2.16	0.36	0.48	1.30	4.1	0.004	0.75	0.0	0.04	15.90	0.00	2.370	11.27	7.60	4.4	95.5	0.1	1.03	1.01	0.52	0.75	1.16	7815	1168	3	0	0	0	0	logfile
✔	7LGW	23331	2024-09-26	2021-01-21	2.7	3.18	—	3.1	0.003	0.95	0.0	0.04	12.09	0.00	2.184	7.05	0.71	2.4	97.6	0.0	1.33	0.65	0.83	5.03	3.1	0.004	0.54	0.0	0.04	14.25	0.00	2.590	5.68	1.41	2.0	98.0	0.0	1.68	0.34	0.61	0.83	4.77	11390	1360	6	0	95	30	0	logfile
✔	7TJS	25930	2024-09-29	2022-01-17	3.2	3.47	3.27	3.4	0.003	0.60	0.0	0.05	12.99	0.00	1.901	1.77	0.00	1.5	98.5	0.0	0.55	0.78	0.85	3.14	3.4	0.002	0.58	0.0	0.04	15.27	0.00	2.046	5.19	0.61	1.2	98.8	0.0	1.38	0.56	0.73	0.85	2.18	23539	3102	12	0	8	0	0	logfile
✔	7EJK	31162	2024-09-24	2021-04-02	3.4	3.65	—	3.5	0.006	0.77	0.0	0.05	13.04	0.00	1.495	12.36	0.43	5.2	94.8	0.0	-0.01	0.70	0.83	2.22	3.5	0.005	0.85	0.0	0.05	15.97	0.00	2.339	9.43	2.67	5.8	94.1	0.1	0.11	1.01	0.71	0.85	1.57	8586	1093	6	0	1	0	0	logfile
✔	7oNJ	12996	2024-09-28	2021-05-25	2.3	2.52	2.24	2.5	0.009	0.86	0.0	0.05	27.96	0.00	2.155	8.48	0.47	0.8	99.2	0.0	-0.25	0.76	0.88	5.16	2.5	0.004	0.77	1.0	0.05	17.67	0.00	2.421	6.72	0.88	0.7	99.3	0.0	3.01	0.47	0.76	0.89	4.24	16947	1834	21	0	63	266	0	logfile
✔	7TJX	25939	2024-09-29	2022-01-17	4.0	3.84	4.09	3.9	0.003	0.62	0.0	0.05	12.05	0.00	1.858	2.49	0.05	1.8	98.2	0.0	0.09	0.60	0.79	—	3.9	0.005	0.91	2.0	0.05	15.94	0.01	1.823	11.03	4.00	2.5	97.5	0.0	0.65	1.47	0.62	0.80	—	21663	3072	12	0	11	0	0	logfile
✔	3JD0	6631	2024-09-29	2016-03-28	3.47	3.93	—	3.8	0.012	0.82	0.0	0.05	10.31	0.00	1.989	15.40	0.00	13.3	85.9	0.8	-5.89	0.85	0.82	3.48	3.8	0.004	0.77	0.0	0.04	14.45	0.00	2.481	12.56	0.60	5.3	94.7	0.0	0.74	2.45	0.85	0.86	1.65	23478	2976	12	0	6	0	0	logfile
✔	7TJT	25931	2024-09-29	2022-01-17	3.2	3.46	3.29	3.4	0.003	0.63	0.0	0.05	13.04	0.00	1.991	3.26	0.00	1.2	98.8	0.0	0.60	0.75	0.85	3.19	3.4	0.003	0.55	0.0	0.04	14.93	0.00	1.958	4.34	1.18	1.9	98.1	0.0	1.40	1.37	0.76	0.87	2.22	23129	3099	11	0	7	0	0	logfile
✔	7QL6	14065	2024-09-27	2021-12-19	3.23	3.65	3.39	3.6	0.004	0.67	1.0	0.05	15.26	0.00	2.258	7.26	0.60	3.3	96.7	0.0	0.66	0.72	0.80	3.00	3.5	0.004	0.62	0.0	0.04	14.16	0.00	2.440	8.04	2.18	3.8	96.2	0.0	0.52	1.33	0.71	0.81	3.22	16617	1990	15	0	38	0	0	logfile
✔	7Y82	33678	2024-09-26	2022-06-22	2.83	2.38	2.88	3.0	0.003	0.57	0.0	0.04	20.35	0.00	1.887	16.18	4.59	1.8	98.2	0.0	0.77	0.77	0.81	2.77	3.0	0.006	0.62	0.0	0.04	20.34	0.00	1.891	12.81	3.06	2.5	97.5	0.0	0.72	0.32	0.71	0.80	3.01	12278	1341	4	66	5	0	0	logfile
✔	7SXo	25502	2024-09-30	2021-11-24	3.3	3.41	—	3.4	0.002	0.65	1.0	0.04	14.86	0.00	2.092	8.41	0.07	5.0	94.9	0.1	-0.70	0.77	0.80	2.18	3.4	0.005	0.68	0.0	0.04	16.08	0.00	1.951	7.59	1.00	6.2	93.7	0.1	-0.55	0.40	0.80	0.86	1.98	24894	3160	13	0	19	0	0	logfile

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