Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GTN	34258	2024-09-23	2022-09-08	3.17	3.63	3.40	3.5	0.003	0.54	0.0	0.04	11.93	0.00	2.208	15.34	1.50	0.9	99.1	0.0	-1.98	0.72	0.73	1.09	3.5	0.004	0.70	0.0	0.04	15.05	0.00	2.566	12.87	1.76	3.6	96.4	0.0	-1.61	1.37	0.73	0.75	1.12	48303	5859	27	0	0	0	0	logfile
✔	8F0G	28756	2024-09-28	2022-11-02	3.35	3.91	3.35	3.6	0.011	0.63	0.0	0.06	14.46	0.01	2.238	7.55	0.14	3.6	96.4	0.0	-0.20	0.79	0.84	2.12	3.6	0.003	0.57	0.0	0.04	14.58	0.00	2.551	5.65	1.57	3.8	96.2	0.0	0.18	1.36	0.80	0.86	1.79	19635	2492	11	0	24	0	0	logfile
✔	8B7Q	15899	2024-09-24	2022-09-30	4.02	4.26	3.86	4.2	0.003	0.60	0.0	0.04	9.87	0.00	2.234	4.41	2.94	3.9	95.6	0.5	0.29	0.66	0.80	—	4.2	0.004	0.70	0.0	0.05	12.55	0.00	2.483	7.40	0.00	4.2	95.8	0.0	1.08	0.93	0.69	0.82	—	3511	441	4	0	1	0	0	logfile
✔	8FU8	29455	2024-09-30	2023-01-16	3.08	2.74	3.01	3.0	0.013	1.29	0.0	0.11	10.27	0.00	2.336	1.90	0.14	5.4	93.6	1.1	-0.39	0.75	0.85	3.36	3.0	0.003	0.63	0.0	0.04	13.68	0.00	2.443	6.14	1.26	7.1	92.9	0.1	-0.33	0.72	0.74	0.88	2.99	25469	3165	6	0	48	0	0	logfile
✔	8C9A	16507	2024-09-28	2023-01-21	4.86	5.39	4.92	4.8	0.001	0.45	0.0	0.04	22.91	0.00	1.924	6.58	0.23	3.6	96.4	0.0	1.73	0.82	0.76	—	4.8	0.005	0.78	0.0	0.05	24.86	0.01	1.968	29.32	0.00	9.1	90.9	0.0	-1.40	1.64	0.85	0.85	—	18059	525	7	650	0	0	0	logfile
✔	7UR6	26706	2024-09-29	2022-04-21	3.46	3.95	3.52	3.8	0.005	0.81	0.0	0.06	18.66	0.00	2.075	3.15	0.23	2.9	97.1	0.0	-0.21	0.81	0.84	2.48	3.8	0.004	0.87	0.0	0.05	15.73	0.00	1.598	8.16	1.81	4.0	96.0	0.0	-0.24	0.53	0.82	0.87	2.60	21633	2466	60	0	180	0	0	logfile
✔	7TXD	26157	2024-09-28	2022-02-08	3.87	4.28	—	4.1	0.006	1.06	1.0	0.06	16.17	0.01	2.287	4.53	0.00	4.5	95.5	0.0	-2.19	0.81	0.77	1.64	4.1	0.003	0.71	0.0	0.04	14.66	0.00	2.198	9.11	1.91	4.7	95.3	0.0	-0.61	0.62	0.82	0.80	1.48	20555	2483	40	0	95	0	0	logfile
✔	8DY6	27776	2024-09-29	2022-08-03	4.32	4.84	4.16	4.2	0.006	0.97	0.0	0.06	19.23	0.01	2.266	4.49	0.00	4.4	95.4	0.2	-1.13	0.82	0.86	—	4.2	0.005	0.66	0.0	0.04	12.97	0.00	2.384	9.19	0.00	4.8	95.2	0.0	-0.16	0.33	0.83	0.87	—	20778	2445	54	0	132	0	0	logfile
✔	8SAL	40273	2024-09-28	2023-04-01	4.9	5.54	4.74	5.0	0.005	0.89	0.0	0.05	13.67	0.01	2.065	4.56	0.00	8.4	91.4	0.1	-2.31	0.76	0.70	—	5.0	0.003	0.80	0.0	0.05	13.32	0.01	2.365	16.56	0.00	8.0	91.9	0.1	-1.88	2.47	0.79	0.77	—	18435	2343	12	0	0	0	0	logfile
✔	8ES9	28572	2024-09-27	2022-10-13	3.25	3.52	3.21	3.4	0.005	0.70	0.0	0.05	14.59	0.00	2.176	6.90	0.00	5.4	94.6	0.1	0.26	0.71	0.84	2.76	3.4	0.003	0.64	0.0	0.05	15.56	0.00	2.352	5.83	1.64	4.6	95.3	0.1	0.71	0.36	0.73	0.88	2.52	11844	1459	17	0	14	0	0	logfile
✔	8D7H	27230	2024-09-26	2022-06-07	3.4	3.69	3.48	3.6	0.003	0.53	0.0	0.04	12.37	0.00	2.291	4.59	1.06	3.9	96.1	0.0	-1.37	0.68	0.76	1.60	3.6	0.003	0.69	0.0	0.05	13.84	0.00	2.362	4.14	2.34	6.1	93.9	0.0	0.06	0.61	0.72	0.84	1.92	12540	1526	22	0	32	0	0	logfile
✔	7XUH	33469	2024-09-25	2022-05-18	2.76	3.05	2.70	3.0	0.011	0.96	0.0	0.05	14.39	0.01	2.275	2.58	0.98	6.0	94.0	0.0	-3.53	0.71	0.88	3.72	3.0	0.003	0.59	0.0	0.04	14.97	0.00	2.538	4.09	1.64	4.8	95.2	0.0	1.01	1.20	0.67	0.87	2.53	11380	1414	6	0	10	4	0	logfile
✔	8C1C	16378	2024-09-28	2022-12-20	4.1	5.17	4.18	4.0	0.008	1.21	1.0	0.06	14.93	0.01	2.072	2.46	0.00	3.2	96.7	0.2	-0.23	0.87	0.71	—	4.0	0.003	0.63	0.0	0.04	12.59	0.00	2.375	7.94	0.00	6.0	94.0	0.0	-0.06	1.16	0.88	0.75	—	19267	1237	13	0	28	0	9284	logfile
✔	8iAi	35302	2024-09-26	2023-02-08	3.5	3.80	3.59	3.7	0.003	0.75	0.0	0.05	13.69	0.01	2.163	3.85	0.00	2.6	97.4	0.0	0.26	0.80	0.85	1.49	3.7	0.007	0.71	0.0	0.05	15.02	0.00	2.336	5.51	1.36	2.8	97.2	0.0	1.55	1.44	0.81	0.86	1.57	60300	7612	42	0	11	0	0	logfile
✔	8ES8	28571	2024-09-26	2022-10-13	2.65	2.71	2.68	2.7	0.004	0.71	0.0	0.05	14.96	0.00	2.142	6.32	0.08	3.4	96.6	0.0	0.76	0.72	0.86	3.52	2.7	0.006	0.80	0.0	0.05	16.11	0.00	2.387	6.62	2.25	4.1	95.9	0.0	0.41	0.97	0.72	0.89	3.59	11976	1464	21	0	19	0	0	logfile
✔	8HoY	34927	2024-09-26	2022-12-11	2.76	2.99	2.88	3.1	0.002	0.46	0.0	0.04	13.25	0.00	2.189	9.49	0.00	7.4	92.6	0.1	-0.64	0.51	0.54	0.86	3.0	0.004	0.73	0.0	0.05	16.62	0.01	2.380	12.85	3.74	9.4	90.5	0.1	-1.75	0.79	0.55	0.62	0.94	13454	1650	3	0	0	0	0	logfile
✔	8EoJ	28377	2024-09-25	2022-10-03	3.07	3.47	3.19	3.2	0.002	0.55	0.0	0.04	11.26	0.00	2.216	7.60	3.76	4.1	95.9	0.0	-1.48	0.69	0.60	0.95	3.2	0.003	0.67	0.0	0.04	14.64	0.00	2.499	13.91	2.74	4.9	95.1	0.0	-0.42	1.71	0.70	0.61	0.77	9327	1219	2	0	0	0	0	logfile
✔	8DZ5	27789	2024-09-24	2022-08-06	3.84	4.27	3.76	4.1	0.003	0.71	0.0	0.04	15.29	0.00	2.167	12.59	0.62	5.4	94.6	0.0	-0.63	0.74	0.82	2.12	4.1	0.006	0.80	0.0	0.05	16.30	0.00	2.497	13.10	3.94	7.9	92.1	0.0	-0.80	1.25	0.75	0.83	1.88	8950	1155	11	0	0	0	0	logfile
✔	8ENE	28271	2024-09-27	2022-09-29	2.64	3.16	2.81	3.1	0.005	0.60	0.0	0.04	12.54	0.00	2.262	5.76	2.15	2.6	97.4	0.0	0.46	0.74	0.77	2.90	3.1	0.004	0.59	0.0	0.04	15.89	0.01	2.414	6.21	3.86	3.4	96.6	0.0	0.66	1.60	0.64	0.76	2.88	15404	1972	8	0	4	0	0	logfile
✔	8AFX	15411	2024-09-23	2022-07-18	4.8	5.07	4.58	5.0	0.005	0.90	0.0	0.05	16.08	0.01	2.159	17.10	1.05	6.1	93.9	0.0	-0.47	0.60	0.65	—	5.0	0.003	0.73	0.0	0.05	12.03	0.00	2.612	10.54	0.00	6.8	93.2	0.0	-1.16	0.58	0.74	0.80	—	2498	321	1	0	0	0	0	logfile

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