Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8V85	43023	2024-09-23	2023-12-04	2.9	5.78	4.39	8.6	0.002	0.50	0.0	0.04	8.92	0.00	2.342	5.38	0.00	2.1	97.9	0.0	1.33	0.20	0.11	0.76	5.7	0.004	0.93	0.0	0.05	13.63	0.00	2.434	26.60	0.58	4.6	95.4	0.0	-1.13	4.15	0.34	0.27	1.13	1539	197	1	0	0	0	0	logfile
✔	6KFK	9974	2024-09-27	2019-07-08	4.1	4.28	—	15.0	0.015	1.99	0.0	0.08	10.94	0.01	1.444	20.13	0.00	8.2	89.5	2.2	-1.03	0.14	0.06	—	6.8	0.004	0.87	0.0	0.05	13.01	0.00	2.304	15.80	0.01	6.9	92.3	0.8	-1.20	1.80	0.23	0.28	—	65076	8844	22	0	0	0	0	logfile
✔	7W6P	32331	2024-09-24	2021-12-02	3.47	3.79	—	9.6	0.004	0.69	0.0	0.04	13.68	0.00	2.196	14.60	0.11	7.0	93.0	0.0	-0.94	0.22	0.11	0.18	8.5	0.004	0.79	0.0	0.05	15.92	0.00	2.503	16.77	2.44	6.3	93.7	0.0	-0.85	1.95	0.33	0.28	0.86	8408	1083	6	0	1	0	0	logfile
✔	7N9Y	24264	2024-09-24	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.59	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	2.2	0.003	1.01	0.0	0.00	4.81	0.00	2.550	7.73	0.00	18.2	81.3	0.5	-4.24	2.61	0.52	0.31	—	7515	2505	2	0	0	0	0	logfile
✔	8RNU	19395	2024-09-25	2024-01-11	3.4	5.41	2.49	3.9	0.010	1.04	0.0	0.05	17.19	0.01	2.104	28.22	0.32	10.1	89.9	0.0	-2.17	0.62	0.30	0.31	3.9	0.004	0.78	0.0	0.05	17.94	0.01	2.398	25.78	3.69	10.5	89.5	0.0	-2.30	0.67	0.63	0.33	0.49	10848	1320	12	0	0	0	0	logfile
✔	8D43	27173	2024-09-24	2022-06-01	2.88	3.12	2.94	5.9	0.004	0.84	1.0	0.06	19.69	0.01	1.371	8.43	5.48	6.5	93.5	0.0	-1.48	0.17	-0.02	0.37	3.1	0.004	0.92	0.0	0.05	18.28	0.01	2.214	17.25	2.38	8.5	91.5	0.0	-1.89	2.69	0.40	0.34	0.78	7763	962	5	0	6	1	0	logfile
✔	8G9R	29874	2024-09-23	2023-02-21	3.28	3.68	2.90	44.0	0.003	0.59	0.0	0.05	16.84	0.01	2.542	2.24	0.00	5.7	94.3	0.0	-3.38	0.13	0.07	1.03	4.2	0.003	0.73	0.0	0.05	16.85	0.01	2.576	13.02	2.05	8.0	92.0	0.0	-3.77	2.57	0.26	0.34	2.06	3570	455	5	0	0	0	0	logfile
✔	7URi	26713	2024-09-23	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	30.06	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.007	1.37	0.0	0.06	28.69	0.01	2.168	19.15	0.00	0.0	0.0	0.0	—	2.07	0.08	0.37	—	1905	0	1	90	0	0	0	logfile
✔	8T53	41042	2024-09-24	2023-06-12	4.1	4.29	4.68	4.1	0.002	0.59	0.0	0.04	12.60	0.00	2.201	11.96	0.00	1.8	98.2	0.0	0.81	0.45	0.45	—	4.2	0.002	0.63	0.0	0.04	13.48	0.00	2.545	9.12	0.00	2.2	97.8	0.0	1.57	0.61	0.44	0.40	—	6660	796	2	0	0	0	0	logfile
✔	1oED	1044	2024-09-23	2003-03-24	4.0	3.94	—	10.4	0.014	2.29	3.0	0.10	17.23	0.01	1.183	224.94	19.76	5.2	92.7	2.1	-3.67	0.39	0.18	—	9.1	0.004	1.04	0.0	0.05	16.17	0.01	2.570	21.32	2.25	2.1	97.9	0.0	1.35	2.68	0.61	0.40	—	4926	636	5	0	0	0	0	logfile
✔	7TTS	26122	2024-09-28	2022-02-01	2.9	12.34	—	—	0.008	0.99	1.0	0.08	12.97	0.01	1.788	5.64	0.30	3.2	96.6	0.1	1.89	0.77	0.55	-0.20	—	0.003	0.67	0.0	0.04	14.03	0.00	1.769	16.72	0.12	3.4	96.5	0.1	2.42	1.03	0.69	0.41	-0.43	18793	2686	12	0	23	0	0	logfile
✔	3KTT	5148	2024-09-23	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	179.94	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	2.1	0.004	1.16	0.0	0.05	17.38	0.01	2.322	25.05	3.91	9.2	89.8	1.0	-2.48	1.77	0.31	0.41	—	3855	513	1	0	0	0	0	logfile
✔	8DFo	27409	2024-09-30	2022-06-22	3.1	3.40	3.29	7.2	0.022	1.64	93.0	0.16	18.53	0.01	1.724	6.88	0.57	4.8	95.2	0.0	-0.44	0.27	0.07	0.22	3.4	0.004	0.82	0.0	0.05	18.47	0.01	2.430	16.09	2.05	5.8	94.2	0.0	-1.28	1.98	0.46	0.42	0.55	23861	2912	13	45	0	0	0	logfile
✔	8CTG	26989	2024-09-23	2022-05-14	3.8	3.16	3.72	3.3	0.004	0.98	0.0	0.05	7.62	0.01	2.113	12.33	6.90	9.7	88.5	1.8	-3.04	0.57	0.35	-0.17	2.3	0.004	0.90	0.0	0.04	6.99	0.01	2.359	5.06	3.45	11.0	88.7	0.3	-2.69	1.99	0.59	0.42	1.71	5100	1006	4	0	1	0	0	logfile
✔	7FG3	31577	2024-09-25	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.29	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.005	1.11	0.0	0.05	16.69	0.01	2.298	18.78	2.69	13.2	86.3	0.5	-3.44	0.77	0.22	0.43	0.35	9054	1166	2	0	0	0	0	logfile
✔	7APK	11857	2024-09-29	2020-10-17	3.3	3.26	—	3.5	0.004	0.81	0.0	0.05	8.50	0.01	2.256	4.07	0.10	4.7	95.2	0.1	-2.73	0.41	0.22	0.13	3.0	0.004	0.72	0.0	0.04	13.07	0.00	2.485	9.88	1.20	5.7	94.1	0.1	1.06	1.59	0.50	0.44	0.84	72697	9893	30	0	74	0	0	logfile
✔	7LVT	23542	2024-09-28	2021-02-26	4.6	4.32	—	4.0	0.008	1.36	3.0	0.09	13.04	0.01	2.057	6.40	0.96	6.4	93.3	0.3	-2.96	0.68	0.65	—	3.8	0.003	0.73	0.0	0.04	12.94	0.00	2.032	10.20	0.00	5.5	94.3	0.1	0.03	16.94	0.55	0.45	—	18944	2876	4	0	0	0	0	logfile
✔	7JGF	22325	2024-09-23	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.74	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.7	0.002	0.49	0.0	0.04	13.16	0.00	2.344	47.75	0.41	5.2	94.8	0.0	0.89	0.65	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	7Woo	32653	2024-09-27	2022-01-22	3.71	4.08	—	3.9	0.010	1.69	139.0	0.10	15.86	0.01	1.041	23.12	4.33	9.3	88.5	2.2	-3.11	0.47	0.44	0.31	3.9	0.005	0.90	1.0	0.05	16.63	0.01	2.312	15.63	2.85	9.2	90.5	0.3	-0.93	1.65	0.48	0.46	0.27	66949	8644	12	0	0	0	0	logfile
✔	8FEL	29032	2024-09-25	2022-12-06	4.64	5.02	4.40	4.5	0.001	0.35	0.0	0.04	14.88	0.00	2.030	6.97	1.98	3.8	96.2	0.0	-0.24	0.70	0.37	—	4.5	0.002	0.58	0.0	0.04	12.97	0.00	2.425	9.82	0.00	6.1	93.9	0.0	-0.77	2.75	0.75	0.46	—	9201	1191	3	0	0	0	0	logfile

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