Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7T3L	25662	2024-09-24	2021-12-08	3.6	8.29	—	3.5	0.004	0.74	0.0	0.05	18.09	0.01	2.223	7.57	0.52	5.0	95.0	0.0	-1.92	0.73	0.45	-0.03	3.4	0.002	0.61	0.0	0.04	18.34	0.00	2.448	14.47	0.95	5.1	94.9	0.0	0.23	1.17	0.94	0.84	-0.02	52219	6242	28	200	0	0	0	logfile
✔	7B6X	12057	2024-09-25	2020-12-08	3.6	2.59	—	2.5	0.008	1.06	0.0	0.06	14.17	0.01	2.035	44.45	0.09	13.3	86.7	0.0	-2.77	0.75	0.72	0.42	2.5	0.003	0.77	0.0	0.05	16.31	0.00	2.398	19.91	4.03	7.9	92.1	0.0	-1.12	1.37	0.75	0.71	-0.01	10470	1290	8	0	0	0	0	logfile
✔	6Z3A	11055	2024-09-23	2020-05-19	3.8	4.08	—	3.8	0.007	1.25	2.0	0.06	12.66	0.01	1.678	10.98	1.08	11.1	88.8	0.1	-4.47	0.78	0.75	0.21	3.8	0.006	1.09	5.0	0.05	15.82	0.01	1.606	26.74	3.63	9.3	90.7	0.0	-1.78	2.32	0.80	0.76	0.00	46142	5730	6	0	4	0	0	logfile
✔	7MF3	23810	2024-09-29	2021-04-08	3.4	4.14	—	3.2	0.003	0.68	0.0	0.04	15.41	0.00	1.985	17.36	0.04	6.5	93.5	0.0	-0.34	0.90	0.73	0.19	3.1	0.003	0.77	0.0	0.04	17.74	0.00	1.907	16.59	1.29	7.1	92.9	0.0	-0.76	1.44	0.91	0.74	0.00	22938	2822	12	0	8	0	0	logfile
✔	8HSJ	34999	2024-09-28	2022-12-19	3.6	4.38	3.44	3.4	0.004	0.80	0.0	0.05	14.73	0.01	1.788	16.52	4.93	3.7	96.0	0.3	-0.81	0.82	0.68	0.35	3.8	0.004	0.81	0.0	0.04	16.75	0.01	1.551	19.36	3.23	4.1	95.5	0.4	-0.58	1.31	0.85	0.72	0.02	17244	2166	12	0	18	0	0	logfile
✘	8B3P	15832	2024-09-28	2022-09-16	2.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-0.91	—	—	1.32	—	—	—	—	—	—	—	—	—	—	—	—	—	5.88	—	—	—	0.02	17620	2370	55	0	0	0	0	logfile
✔	6CXC	7774	2024-09-27	2018-04-02	3.9	4.14	—	4.0	0.006	1.03	0.0	0.06	11.60	0.01	2.198	9.05	0.29	6.2	93.8	0.0	-4.06	0.71	0.71	0.12	4.0	0.003	0.84	0.0	0.05	15.96	0.00	2.439	14.28	3.16	5.1	94.9	0.0	-2.26	2.13	0.73	0.76	0.04	15196	1945	18	0	6	0	0	logfile
✔	5VA1	8650	2024-09-27	2017-03-24	3.7	5.99	—	4.4	0.008	1.02	0.0	0.06	11.84	0.00	1.715	8.09	1.30	4.6	95.4	0.0	-3.52	0.65	0.78	0.25	4.5	0.003	0.87	0.0	0.05	15.14	0.00	2.459	16.18	1.89	2.3	97.7	0.0	0.01	2.73	0.66	0.84	0.04	17628	2240	4	0	0	0	0	logfile
✔	8UFE	42205	2024-09-23	2023-10-04	3.68	4.10	3.84	4.1	0.005	0.79	0.0	0.04	19.16	0.00	2.205	12.83	1.76	5.3	94.4	0.2	1.92	0.49	0.72	-0.41	4.1	0.003	0.66	0.0	0.04	18.34	0.00	2.458	12.83	5.88	5.3	94.4	0.2	1.75	0.38	0.53	0.74	0.06	3449	470	2	0	1	0	0	logfile
✔	6UMM	20820	2024-09-29	2019-10-09	3.7	6.74	4.15	4.0	0.006	0.79	0.0	0.04	13.23	0.00	2.203	11.97	0.17	4.8	95.2	0.0	-2.07	0.55	0.56	-0.10	4.1	0.004	0.92	0.0	0.05	14.64	0.00	2.295	19.02	2.32	3.9	96.1	0.0	0.67	0.89	0.62	0.83	0.07	23658	3184	10	0	0	0	0	logfile
✔	8UoP	42435	2024-09-26	2023-10-20	3.8	3.97	3.89	3.8	0.005	0.91	0.0	0.04	16.45	0.01	1.954	17.97	0.73	15.7	83.6	0.7	-3.60	0.18	0.15	0.40	3.9	0.003	0.65	0.0	0.04	17.06	0.00	2.263	11.38	3.37	12.6	87.1	0.3	-3.11	0.92	0.24	0.23	0.07	13188	872	2	0	0	0	6544	logfile
✔	8P2M	17370	2024-09-23	2023-05-16	3.82	5.95	4.51	4.2	0.012	1.85	111.0	0.14	13.83	0.01	2.190	2.42	1.90	4.5	95.5	0.0	-1.71	0.87	0.76	-0.22	4.2	0.003	0.79	0.0	0.04	15.15	0.00	2.095	14.57	1.03	2.9	97.1	0.0	1.46	1.18	0.87	0.75	0.07	46702	5819	9	0	0	0	0	logfile
✔	8UQ6	42462	2024-09-25	2023-10-23	3.6	5.71	2.81	39.0	0.016	2.36	10.0	0.13	16.35	0.02	2.502	1.87	5.96	23.5	71.6	4.9	-4.36	0.19	0.00	0.38	5.5	0.004	0.87	0.0	0.05	16.60	0.01	2.351	7.50	2.38	20.0	79.5	0.5	-3.96	2.37	0.22	0.15	0.07	11700	765	1	0	0	0	5689	logfile
✔	6iP1	9697	2024-09-25	2018-11-01	3.9	4.05	—	4.0	0.006	1.03	0.0	0.05	11.71	0.00	1.321	7.91	0.34	7.5	92.5	0.0	-5.85	0.59	0.72	1.01	4.0	0.004	0.88	0.0	0.04	18.60	0.00	2.487	15.50	4.83	7.8	92.2	0.0	-0.77	1.21	0.61	0.75	0.08	11245	1420	8	0	0	0	0	logfile
✔	6PMJ	20395	2024-09-26	2019-07-02	3.91	5.34	—	4.4	0.011	1.21	0.0	0.06	16.10	0.01	2.011	11.04	0.31	10.4	89.3	0.3	-4.41	0.67	0.43	0.20	4.4	0.003	0.74	0.0	0.04	17.97	0.00	1.879	15.54	2.34	9.6	90.3	0.1	-2.38	1.70	0.89	0.77	0.09	57984	3453	10	110	4	0	28609	logfile
✔	8D6X	27225	2024-09-28	2022-06-06	3.2	10.22	—	—	0.003	0.62	0.0	0.04	12.14	0.00	2.195	17.76	0.06	2.6	97.4	0.0	1.17	0.70	0.42	0.14	—	0.004	0.73	0.0	0.05	14.96	0.00	2.367	26.07	1.82	5.1	94.9	0.0	-0.27	4.66	0.82	0.62	0.13	68362	8957	41	0	0	0	0	logfile
✔	6PMi	20394	2024-09-26	2019-07-02	3.86	4.66	—	4.1	0.012	1.26	0.0	0.06	16.10	0.01	1.949	12.35	0.24	10.7	88.9	0.4	-4.48	0.69	0.51	0.20	4.1	0.004	0.74	0.0	0.04	17.60	0.00	1.477	15.57	2.41	10.0	89.8	0.1	-2.27	1.01	0.86	0.77	0.13	57985	3453	10	110	4	0	28610	logfile
✔	8F5B	28864	2024-09-27	2022-11-13	3.95	4.66	3.92	4.1	0.004	0.72	0.0	0.04	16.73	0.00	1.993	14.24	0.07	6.4	93.6	0.0	0.29	0.71	0.76	0.75	4.1	0.003	0.70	0.0	0.04	15.21	0.00	1.971	10.37	1.86	5.8	94.2	0.0	0.35	0.33	0.71	0.76	0.14	14152	1924	4	0	14	0	0	logfile
✔	9G2R	50981	2024-09-29	2024-07-11	3.88	4.71	3.95	3.8	0.010	1.24	0.0	0.09	13.90	0.02	2.353	8.96	0.58	1.7	98.3	0.0	0.17	0.81	0.73	0.27	3.9	0.003	0.62	1.0	0.03	15.88	0.00	2.515	9.38	1.24	0.6	99.4	0.0	5.33	1.55	0.85	0.82	0.14	22620	2824	12	0	0	0	0	logfile
✔	6A7F	6993	2024-09-25	2018-07-03	3.4	3.51	—	3.4	0.014	1.17	0.0	0.06	11.20	0.01	2.271	4.26	0.00	0.0	100.0	0.0	-2.13	0.55	0.84	0.56	3.4	0.004	0.74	0.0	0.05	17.68	0.00	2.453	14.29	2.85	0.3	99.7	0.0	2.14	2.04	0.60	0.87	0.14	10830	1410	30	0	0	0	0	logfile

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