Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5A6E	3062	2024-09-26	2015-06-25	4.5	6.76	—	5.1	0.010	3.73	0.0	0.05	15.55	0.01	2.112	8.77	3.19	11.1	88.8	0.2	-5.00	0.36	0.56	—	4.8	0.002	0.56	0.0	0.03	10.40	0.00	2.249	6.20	0.00	5.1	94.9	0.0	-0.28	1.44	0.38	0.66	—	11093	634	4	0	182	0	5102	logfile
✔	6XN4	22267	2024-09-28	2020-07-02	3.35	3.89	—	3.3	0.009	1.24	0.0	0.07	17.20	0.01	2.166	10.06	0.00	10.0	89.8	0.1	-3.52	0.87	0.78	1.71	3.3	0.005	0.75	0.0	0.04	17.95	0.00	2.486	14.28	1.91	9.7	90.2	0.1	-1.90	0.39	0.88	0.80	1.23	19273	2234	10	65	0	0	0	logfile
✔	6oY3	20221	2024-09-25	2019-05-14	4.0	4.14	—	4.1	0.009	1.10	0.0	0.06	15.73	0.01	2.285	9.49	0.40	6.9	92.9	0.2	-6.09	0.68	0.81	—	4.1	0.003	0.70	0.0	0.04	17.00	0.00	2.330	5.06	2.10	3.1	96.8	0.1	-1.58	0.50	0.68	0.80	—	9534	1188	4	0	4	0	0	logfile
✔	8EoW	28487	2024-09-30	2022-10-04	3.9	4.29	3.96	4.2	0.003	0.57	0.0	0.04	16.05	0.00	2.211	8.15	0.35	4.0	96.0	0.0	1.45	0.65	0.72	1.03	4.2	0.003	0.63	0.0	0.04	16.54	0.00	2.515	6.98	2.97	3.7	96.3	0.0	1.55	0.33	0.64	0.72	1.03	24628	3372	8	0	0	0	0	logfile
✔	7XP5	33365	2024-09-24	2022-05-03	3.08	2.39	3.13	2.1	0.004	0.59	0.0	0.04	12.66	0.00	2.198	8.66	0.00	3.1	96.9	0.0	1.69	0.74	0.75	2.94	2.1	0.004	0.91	0.0	0.04	15.39	0.00	2.459	8.36	2.07	2.6	97.4	0.0	1.55	1.10	0.74	0.76	2.01	8381	1059	5	0	0	0	0	logfile
✔	6UVR	20914	2024-09-29	2019-11-04	4.0	3.50	—	3.4	0.011	1.12	0.0	0.06	8.48	0.01	2.021	10.49	0.00	10.4	89.6	0.0	-5.14	0.62	0.76	—	3.4	0.002	0.54	0.0	0.04	13.27	0.00	2.456	4.37	0.56	5.8	94.2	0.0	2.72	1.43	0.65	0.80	—	22692	1920	12	0	0	0	9696	logfile
✔	6P49	20247	2024-09-25	2019-05-26	3.3	3.60	3.10	3.6	0.007	1.50	0.0	0.08	16.18	0.01	1.843	18.26	3.28	6.9	92.4	0.7	-6.27	0.54	0.57	1.13	3.6	0.003	0.85	0.0	0.05	17.02	0.00	2.519	12.57	2.61	9.3	90.7	0.0	-3.14	1.75	0.54	0.59	1.28	9576	1166	4	0	2	0	0	logfile
✔	7PF5	13368	2024-09-27	2021-08-11	3.8	4.51	—	3.4	0.006	0.89	0.0	0.05	28.94	0.01	2.264	6.06	0.00	1.8	98.2	0.0	-0.59	0.87	0.80	0.89	3.4	0.004	0.66	0.0	0.03	28.80	0.00	2.319	15.47	1.01	2.5	97.5	0.0	0.82	1.25	0.87	0.82	0.82	13470	843	11	334	0	0	0	logfile
✔	7K63	22687	2024-09-28	2020-09-18	3.03	3.30	—	3.2	0.004	0.62	0.0	0.04	26.72	0.00	2.158	6.92	0.09	2.0	98.0	0.0	0.98	0.76	0.80	3.33	3.2	0.003	0.60	0.0	0.03	27.30	0.00	2.395	6.64	2.18	2.1	97.9	0.0	1.42	0.39	0.79	0.84	2.78	18330	1298	13	394	0	0	0	logfile
✔	7XP6	33366	2024-09-24	2022-05-03	3.01	2.40	3.14	2.1	0.003	0.59	0.0	0.04	13.31	0.01	2.100	7.69	0.00	2.6	97.4	0.0	1.78	0.74	0.75	2.85	2.1	0.003	0.58	0.0	0.04	14.83	0.00	2.494	6.43	2.86	2.6	97.3	0.1	1.70	1.12	0.76	0.79	2.58	8336	1051	6	0	1	0	0	logfile
✔	5VA1	8650	2024-09-27	2017-03-24	3.7	5.99	—	4.4	0.008	1.02	0.0	0.06	11.84	0.00	1.715	8.09	1.30	4.6	95.4	0.0	-3.52	0.65	0.78	0.25	4.5	0.003	0.87	0.0	0.05	15.14	0.00	2.459	16.18	1.89	2.3	97.7	0.0	0.01	2.73	0.66	0.84	0.04	17628	2240	4	0	0	0	0	logfile
✔	7LV8	23529	2024-09-25	2021-02-24	3.4	3.85	3.57	3.8	0.003	0.65	0.0	0.04	27.12	0.00	1.334	3.06	0.17	2.7	97.3	0.0	-3.26	0.70	0.78	0.97	3.9	0.004	0.57	0.0	0.03	27.32	0.00	2.561	7.82	2.67	2.1	97.9	0.0	2.21	0.54	0.69	0.78	1.05	10651	764	10	242	0	0	0	logfile
✔	8HBD	34619	2024-09-24	2022-10-28	2.99	2.40	2.80	3.0	0.003	0.71	0.0	0.04	16.47	0.00	1.912	13.34	1.85	3.8	96.0	0.2	0.26	0.74	0.76	1.67	2.2	0.003	0.68	0.0	0.04	17.33	0.00	2.496	12.19	4.47	3.3	96.7	0.0	0.22	1.19	0.77	0.79	1.85	8803	1158	6	0	0	0	0	logfile
✔	6E9E	9013	2024-09-24	2018-08-01	3.4	3.44	3.75	3.5	0.006	0.73	0.0	0.04	13.74	0.00	2.037	3.80	0.26	4.1	95.9	0.0	-4.95	0.77	0.82	4.40	3.4	0.002	0.54	0.0	0.04	16.28	0.00	2.310	4.12	0.77	1.8	98.2	0.0	0.50	1.11	0.78	0.89	3.49	8163	863	3	51	1	0	0	logfile
✔	8HCQ	34663	2024-09-24	2022-11-02	3.01	2.26	2.89	2.1	0.003	0.66	0.0	0.04	16.12	0.01	1.609	9.07	0.21	3.7	96.1	0.2	0.43	0.68	0.70	1.49	2.1	0.003	0.66	0.0	0.04	17.16	0.00	2.542	8.06	5.48	3.8	96.0	0.2	0.25	1.04	0.76	0.78	1.78	8991	1157	6	0	0	0	0	logfile
✔	7Y1R	33571	2024-09-24	2022-06-08	4.01	2.49	4.09	3.9	0.003	0.70	0.0	0.04	17.91	0.00	2.227	8.79	0.00	5.8	94.2	0.0	-2.79	0.59	0.55	—	2.1	0.003	0.72	0.0	0.04	12.97	0.00	2.398	7.97	0.00	6.7	93.3	0.0	-2.61	0.56	0.62	0.60	—	8565	1041	11	0	20	0	0	logfile
✔	7X2V	32972	2024-09-24	2022-02-26	3.09	2.34	—	2.1	0.007	0.93	0.0	0.05	11.89	0.01	2.115	6.17	0.10	5.5	94.5	0.0	-0.89	0.65	0.60	1.40	2.1	0.003	0.67	0.0	0.04	14.21	0.00	2.378	9.83	2.71	4.6	95.4	0.0	0.31	0.44	0.63	0.59	0.86	8755	1122	5	0	0	0	0	logfile
✔	7JG6	22312	2024-09-28	2020-07-18	3.7	2.39	3.79	2.2	0.008	1.40	0.0	0.00	6.55	0.01	2.433	0.00	0.00	2.9	97.0	0.1	-0.59	0.62	0.54	—	2.3	0.004	0.91	0.0	0.00	6.00	0.00	2.539	0.24	0.00	11.6	88.4	0.0	-1.02	1.66	0.71	0.69	—	19320	4819	20	0	11	0	0	logfile
✔	7PMY	13544	2024-09-25	2021-09-04	3.8	4.01	3.76	3.9	0.002	0.46	0.0	0.04	9.15	0.00	2.008	5.14	1.40	2.0	97.9	0.2	0.55	0.66	0.79	2.91	3.9	0.003	0.55	0.0	0.04	12.66	0.00	2.483	5.72	1.93	3.5	96.5	0.0	0.80	0.75	0.65	0.80	1.92	10499	659	2	0	0	0	5276	logfile
✔	7V69	31739	2024-09-25	2021-08-20	3.4	2.24	—	2.0	0.003	0.65	0.0	0.04	12.64	0.00	2.096	13.28	0.00	2.9	97.1	0.0	-2.02	0.68	0.64	2.22	2.0	0.004	0.66	0.0	0.04	15.16	0.00	2.469	11.80	2.91	4.3	95.7	0.0	-1.07	0.44	0.70	0.69	2.00	8539	1122	5	0	0	0	0	logfile

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