Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HH9	34756	2024-09-30	2022-11-16	3.6	3.44	3.55	3.4	0.004	0.67	0.0	0.05	13.99	0.00	1.830	6.96	0.19	2.9	97.0	0.1	0.73	0.82	0.87	2.86	3.4	0.004	0.59	0.0	0.04	15.38	0.00	1.922	5.24	2.14	3.5	96.5	0.0	0.62	0.30	0.83	0.87	2.14	24250	3129	13	0	12	0	0	logfile
✔	7VQQ	32092	2024-09-23	2021-10-20	2.9	2.61	—	3.1	0.009	0.85	0.0	0.05	11.51	0.01	2.233	2.50	0.00	12.4	87.6	0.0	-6.09	0.47	0.86	4.62	3.1	0.004	0.71	0.0	0.04	12.43	0.00	2.570	1.11	2.28	3.4	96.6	0.0	-4.84	0.32	0.47	0.87	4.80	1968	273	3	0	0	0	0	logfile
✔	7UN5	26613	2024-09-23	2022-04-08	3.13	3.63	3.08	3.6	0.004	0.72	0.0	0.04	14.46	0.00	2.387	11.64	0.51	7.0	93.0	0.0	-3.83	0.40	0.80	4.50	3.6	0.004	0.73	0.0	0.04	15.27	0.00	2.515	8.73	2.56	7.2	92.8	0.0	-3.75	1.12	0.35	0.74	4.82	4380	620	10	0	0	0	0	logfile
✔	7KHW	22881	2024-09-27	2020-10-22	3.4	3.56	—	3.6	0.008	0.97	0.0	0.05	13.30	0.00	1.645	21.96	0.00	11.6	88.4	0.0	-1.82	0.60	0.77	1.48	3.6	0.004	0.65	0.0	0.04	15.97	0.00	2.391	5.73	1.70	7.7	92.3	0.0	0.48	0.60	0.64	0.82	1.64	65550	8700	50	0	0	0	0	logfile
✔	7QK6	14039	2024-09-23	2021-12-17	2.27	2.34	2.17	2.3	0.011	1.84	0.0	0.09	9.70	0.01	2.520	0.00	0.00	6.4	93.6	0.0	-1.99	0.37	0.79	7.78	2.3	0.003	0.62	0.0	0.05	15.64	0.00	2.584	1.62	0.69	5.8	94.2	0.0	-2.07	1.48	0.38	0.85	6.46	2469	162	3	0	0	0	1278	logfile
✔	5o09	3726	2024-09-28	2017-05-16	3.6	3.66	—	3.7	0.014	1.48	32.0	0.10	13.27	0.01	0.180	18.46	1.36	6.3	92.8	0.8	-4.52	0.53	0.60	0.71	3.6	0.004	0.80	0.0	0.04	16.91	0.00	2.388	16.76	2.79	5.2	94.8	0.0	-0.82	1.62	0.60	0.75	1.19	67424	8648	40	16	0	0	0	logfile
✔	8HHB	34758	2024-09-30	2022-11-16	3.5	3.08	3.37	3.3	0.004	0.63	0.0	0.05	14.33	0.00	1.908	5.81	0.00	2.9	97.1	0.0	0.99	0.78	0.87	3.11	3.3	0.003	0.55	0.0	0.04	15.61	0.00	1.872	4.23	1.29	3.0	97.0	0.0	1.21	0.92	0.78	0.87	2.73	24245	3129	12	0	11	0	0	logfile
✔	7YPG	33999	2024-09-23	2022-08-03	2.5	2.00	2.09	3.0	0.008	0.80	0.0	0.06	14.50	0.00	2.331	9.02	0.00	12.3	87.7	0.0	-5.97	0.40	0.82	3.85	3.0	0.004	0.66	0.0	0.05	17.43	0.00	2.641	8.29	5.77	8.2	91.8	0.0	-5.34	0.98	0.41	0.82	3.15	2676	354	6	0	0	0	0	logfile
✔	8DPL	27637	2024-09-29	2022-07-15	2.53	3.55	2.56	3.0	0.002	0.48	0.0	0.04	9.41	0.00	2.277	3.90	0.00	2.5	97.5	0.0	1.13	0.90	0.87	4.07	3.1	0.004	0.82	0.0	0.04	13.37	0.01	2.467	6.10	1.46	2.9	97.1	0.0	0.55	1.57	0.89	0.88	3.98	16872	2163	21	0	21	0	0	logfile
✔	8HiN	34823	2024-09-23	2022-11-21	3.3	2.71	3.35	3.3	0.017	2.46	6.0	0.10	16.88	0.01	2.228	12.04	4.58	6.7	92.6	0.7	-3.91	0.50	0.70	2.78	3.3	0.003	0.65	0.0	0.04	16.96	0.00	2.575	7.47	2.99	3.0	97.0	0.0	1.67	0.51	0.64	0.78	1.54	4788	617	3	0	2	0	0	logfile
✔	8U13	41800	2024-09-27	2023-08-30	3.8	4.21	3.57	3.9	0.004	0.64	0.0	0.04	27.10	0.00	1.330	13.20	0.00	2.5	97.5	0.0	0.79	0.88	0.84	1.36	3.9	0.004	0.73	0.0	0.04	27.60	0.00	2.085	13.07	3.44	4.2	95.8	0.0	0.62	0.52	0.88	0.85	1.23	12825	858	12	293	2	0	0	logfile
✔	7X84	33055	2024-09-23	2022-03-11	3.0	3.07	2.65	3.2	0.008	0.83	0.0	0.06	13.87	0.00	2.023	11.21	0.00	10.3	89.7	0.0	-5.69	0.40	0.84	3.98	3.2	0.004	0.75	0.0	0.05	17.25	0.00	2.574	8.29	2.12	8.0	92.0	0.0	-3.47	0.54	0.40	0.84	2.57	3258	405	3	0	0	0	0	logfile
✔	7AD9	11721	2024-09-27	2020-09-14	3.5	3.60	3.40	3.5	0.017	1.61	5.0	0.08	12.97	0.01	1.765	2.27	0.30	1.8	98.2	0.0	-0.26	0.68	0.81	2.87	3.5	0.003	0.65	0.0	0.05	15.34	0.00	1.987	8.42	1.52	2.2	97.8	0.0	1.09	1.83	0.69	0.84	2.39	15560	1965	25	0	20	0	0	logfile
✔	8W8R	37357	2024-09-24	2023-09-04	3.3	3.13	3.14	3.2	0.006	0.85	0.0	0.06	16.67	0.00	2.227	7.59	1.64	5.2	94.8	0.0	-0.20	0.68	0.85	2.57	3.2	0.003	0.57	0.0	0.04	17.03	0.00	2.514	3.46	3.59	4.3	95.7	0.0	0.39	0.27	0.65	0.85	2.39	9018	1142	6	0	2	0	0	logfile
✔	8BVT	16271	2024-09-23	2022-12-06	3.94	4.42	4.04	4.3	0.009	1.22	0.0	0.05	17.64	0.01	2.157	14.86	0.23	4.2	95.8	0.0	0.33	0.60	0.78	0.48	4.3	0.003	0.84	0.0	0.04	17.62	0.00	2.579	10.44	5.59	4.6	95.4	0.0	0.62	0.31	0.60	0.78	0.48	4517	623	3	0	1	0	0	logfile
✔	8EEU	28058	2024-09-28	2022-09-07	3.5	2.35	3.42	2.2	0.012	0.94	0.0	0.05	9.27	0.01	1.997	4.04	0.05	10.9	88.9	0.2	-4.71	0.69	0.74	3.72	2.2	0.004	0.70	0.0	0.05	14.99	0.00	2.452	8.62	3.05	6.5	93.5	0.0	-1.62	1.24	0.71	0.76	3.12	19127	2471	8	0	0	0	0	logfile
✔	7JSV	22460	2024-09-29	2020-08-16	3.9	3.98	—	4.0	0.020	2.10	0.0	0.10	14.87	0.01	2.348	6.75	0.00	0.0	100.0	0.0	1.16	0.61	0.80	2.43	4.0	0.004	0.80	0.0	0.04	16.90	0.00	2.467	11.92	2.77	1.3	98.7	0.0	2.20	0.87	0.65	0.84	3.08	22140	2706	82	0	41	0	0	logfile
✔	7oAG	12776	2024-09-24	2021-04-19	3.4	3.78	—	3.4	0.007	0.67	0.0	0.05	10.39	0.00	2.025	5.52	0.00	5.3	94.7	0.0	-0.35	0.81	0.88	3.22	3.4	0.006	0.76	0.0	0.05	13.39	0.00	2.453	6.76	0.39	0.3	99.7	0.0	-0.39	2.12	0.82	0.91	4.45	7600	1000	25	0	0	0	0	logfile
✔	8BW7	16280	2024-09-23	2022-12-06	3.53	4.04	3.62	4.0	0.003	0.62	0.0	0.04	17.61	0.00	2.164	11.00	0.00	3.3	96.7	0.0	0.80	0.55	0.72	1.22	4.0	0.003	0.61	0.0	0.04	18.06	0.00	2.534	9.11	4.52	3.1	96.9	0.0	0.94	0.27	0.57	0.72	1.45	4748	612	3	0	2	0	0	logfile
✔	7BTi	30179	2024-09-27	2020-04-01	3.6	3.69	—	3.6	0.010	0.86	0.0	0.06	17.05	0.01	2.083	5.58	10.93	5.7	94.1	0.2	-4.46	0.75	0.88	2.31	3.6	0.004	0.67	0.0	0.05	15.77	0.00	1.975	6.40	2.57	6.2	93.8	0.0	-1.27	0.53	0.75	0.88	1.99	14650	1860	13	0	10	0	0	logfile

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