Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LQH	23486	2024-09-26	2021-02-13	3.4	3.12	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.098	31.15	14.58	0.0	100.0	0.0	-5.94	0.59	0.80	5.83	3.2	0.110	4.14	180.0	0.30	23.66	0.02	1.889	109.96	25.00	20.5	79.5	0.0	-5.87	3.62	0.65	0.87	3.05	12096	1152	144	0	0	0	0	logfile
✔	6ZRF	11380	2024-09-23	2020-07-13	3.6	3.66	1.96	3.6	0.010	1.07	0.0	0.04	13.34	0.00	1.993	42.14	0.00	4.9	95.1	0.0	-6.22	0.67	0.79	1.84	3.7	0.005	0.71	0.0	0.04	14.65	0.00	2.590	16.24	5.00	11.7	88.3	0.0	-5.84	0.50	0.68	0.81	2.62	2220	300	12	0	0	0	0	logfile
✔	7WNZ	32636	2024-09-25	2022-01-20	3.4	3.47	—	4.0	0.003	0.52	0.0	0.05	10.39	0.00	2.177	6.80	0.00	6.3	93.7	0.0	-3.33	0.51	0.70	4.51	4.0	0.002	0.59	0.0	0.05	12.62	0.00	2.467	6.80	0.64	6.5	93.5	0.0	-5.80	0.52	0.31	0.66	5.47	9300	650	10	0	0	0	4780	logfile
✔	7DWV	30887	2024-09-23	2021-01-18	3.07	2.95	—	3.6	0.007	0.80	0.0	0.06	14.69	0.00	2.024	16.67	0.00	26.8	73.2	0.0	-7.45	0.41	0.75	4.09	4.1	0.003	0.68	0.0	0.05	17.47	0.00	2.509	11.08	14.29	17.5	82.5	0.0	-5.79	1.12	0.38	0.71	1.87	2064	258	6	0	0	0	0	logfile
✔	5LiJ	4054	2024-09-23	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.64	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.005	1.11	0.0	0.04	9.68	0.00	2.554	11.83	0.00	32.7	67.3	0.0	-5.72	0.60	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	7Q64	13851	2024-09-24	2021-11-05	2.76	2.81	2.66	2.9	0.014	1.34	0.0	0.09	10.20	0.01	2.276	7.23	3.83	8.3	91.7	0.0	-6.01	0.58	0.78	3.39	2.8	0.004	0.72	0.0	0.04	14.44	0.00	2.569	11.79	4.94	5.5	94.5	0.0	-5.69	0.75	0.59	0.86	3.64	7810	1100	30	0	0	0	0	logfile
✔	5o3L	3741	2024-09-25	2017-05-24	3.4	3.71	3.34	3.7	0.012	1.03	0.0	0.06	8.97	0.01	2.111	9.60	0.00	22.4	77.6	0.0	-6.67	0.60	0.69	2.44	3.6	0.006	1.18	0.0	0.05	15.33	0.01	2.173	13.91	2.97	15.8	84.2	0.0	-5.62	2.66	0.56	0.74	2.68	11360	730	10	0	0	0	5790	logfile
✔	6ZRQ	11382	2024-09-23	2020-07-14	3.9	4.06	—	4.2	0.009	1.22	0.0	0.05	11.93	0.00	2.597	20.13	0.00	5.0	95.0	0.0	-4.20	0.64	0.62	3.62	4.2	0.004	0.72	0.0	0.04	12.88	0.00	2.491	20.69	2.31	15.8	84.2	0.0	-5.59	2.11	0.70	0.77	2.79	3948	276	12	0	0	0	1908	logfile
✔	6SHS	10204	2024-09-24	2019-08-08	4.4	4.36	—	4.3	0.009	1.02	0.0	0.06	12.04	0.00	2.341	25.68	0.00	21.1	78.9	0.0	-5.87	0.69	0.62	—	4.4	0.002	0.64	0.0	0.05	12.68	0.00	2.416	3.63	0.00	15.4	84.6	0.0	-5.52	1.68	0.73	0.71	—	7068	480	12	0	0	0	3408	logfile
✔	7YR6	34047	2024-09-23	2022-08-09	4.8	5.13	4.65	4.7	0.004	0.88	0.0	0.05	26.03	0.00	2.291	7.11	3.30	15.1	84.9	0.0	-5.39	0.81	0.74	—	4.7	0.004	0.78	0.0	0.04	25.96	0.00	2.356	29.40	0.00	23.6	76.4	0.0	-5.37	0.78	0.82	0.80	—	4248	220	5	118	0	0	0	logfile
✔	7KWZ	23059	2024-09-23	2020-12-02	3.2	3.41	—	3.4	0.006	0.80	0.0	0.05	12.48	0.00	2.271	14.29	0.00	7.3	92.7	0.0	-5.51	0.47	0.81	4.47	3.4	0.004	0.83	0.0	0.04	15.26	0.00	2.517	12.13	4.09	3.9	96.1	0.0	-5.36	0.99	0.48	0.84	3.64	4695	695	5	0	0	0	0	logfile
✔	7L7H	23212	2024-09-23	2020-12-28	4.0	2.39	—	4.0	0.008	1.47	0.0	0.08	15.10	0.01	2.199	13.87	3.53	36.3	63.7	0.0	-6.00	0.47	0.60	—	4.0	0.004	0.93	0.0	0.06	17.13	0.00	2.551	15.88	11.76	26.8	73.2	0.0	-5.34	0.77	0.51	0.65	—	2430	352	8	0	0	0	0	logfile
✔	7YPG	33999	2024-09-23	2022-08-03	2.5	2.00	2.09	3.0	0.008	0.80	0.0	0.06	14.50	0.00	2.331	9.02	0.00	12.3	87.7	0.0	-5.97	0.40	0.82	3.85	3.0	0.004	0.66	0.0	0.05	17.43	0.00	2.641	8.29	5.77	8.2	91.8	0.0	-5.34	0.98	0.41	0.82	3.15	2676	354	6	0	0	0	0	logfile
✔	9FoR	50628	2024-09-23	2024-06-12	2.75	2.54	2.63	2.8	0.012	2.11	5.0	0.10	12.86	0.01	2.496	1.38	3.17	7.4	91.5	1.1	-5.01	0.49	0.92	7.55	2.7	0.003	0.86	0.0	0.04	15.96	0.00	2.632	1.08	1.59	6.4	93.6	0.0	-5.31	0.37	0.53	0.91	6.33	3405	490	10	0	0	0	0	logfile
✔	8SBD	40305	2024-09-24	2023-04-03	3.2	3.26	4.77	3.7	0.003	0.73	0.0	0.04	12.98	0.00	2.028	18.83	5.97	6.2	93.8	0.0	-4.19	0.70	0.71	2.96	3.7	0.004	0.71	0.0	0.05	15.68	0.00	2.354	22.44	3.92	12.7	87.3	0.0	-5.30	0.74	0.72	0.74	3.76	8864	584	32	0	0	0	4280	logfile
✔	6VW2	21410	2024-09-23	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.005	0.90	0.0	0.05	15.25	0.00	2.507	12.79	4.76	15.9	84.1	0.0	-5.27	0.43	0.39	0.71	1.38	1800	240	10	0	0	0	0	logfile
✔	7BX7	30235	2024-09-23	2020-04-17	2.8	2.94	—	2.9	0.009	0.84	0.0	0.04	12.96	0.00	2.228	15.34	0.00	9.3	90.7	0.0	-5.83	0.40	0.79	6.36	2.9	0.004	0.56	0.0	0.04	14.00	0.00	2.482	3.47	1.15	6.2	93.8	0.0	-5.27	0.55	0.40	0.78	5.99	1896	270	6	0	0	0	0	logfile
✔	9FAB	50271	2024-09-24	2024-05-10	3.9	3.54	3.80	3.6	0.010	1.57	0.0	0.07	11.24	0.01	2.042	7.97	0.00	1.7	98.3	0.0	-4.50	0.44	0.68	2.55	3.7	0.003	0.68	0.0	0.05	14.74	0.00	2.507	6.81	2.68	9.4	90.6	0.0	-5.27	1.34	0.45	0.70	2.06	8595	585	10	0	5	0	4190	logfile
✔	7Q65	13852	2024-09-23	2021-11-05	3.32	2.96	3.26	3.3	0.016	1.56	0.0	0.10	10.10	0.01	2.159	3.45	8.33	10.5	89.5	0.0	-5.74	0.64	0.85	4.16	3.3	0.004	0.67	0.0	0.03	13.35	0.00	2.571	10.69	7.58	7.9	92.1	0.0	-5.24	0.68	0.57	0.84	4.51	6204	880	22	0	0	0	0	logfile
✔	3JAC	6343	2024-09-27	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	57.64	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.72	0.0	0.07	13.28	0.01	2.047	64.31	0.00	24.4	74.1	1.6	-5.24	3.68	0.54	0.61	—	15741	1716	3	0	1038	0	0	logfile

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