Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8T0M	40944	2024-09-23	2023-06-01	2.4	2.53	2.44	2.5	0.003	0.56	0.0	0.04	16.14	0.00	2.184	5.34	1.17	1.4	98.6	0.0	1.20	0.77	0.86	4.07	2.6	0.004	0.73	1.0	0.04	16.87	0.00	1.710	6.32	1.79	1.4	98.6	0.0	1.54	1.10	0.75	0.85	3.86	47538	6102	28	0	0	0	0	logfile
✔	8SN9	40617	2024-09-26	2023-04-26	3.9	3.90	3.78	3.8	0.003	0.55	0.0	0.03	25.89	0.00	1.329	7.72	0.00	2.5	97.5	0.0	1.88	0.83	0.84	0.89	3.8	0.004	0.63	0.0	0.04	26.32	0.00	2.126	7.76	0.87	2.4	97.6	0.0	1.63	1.37	0.83	0.84	0.58	14591	1076	14	294	2	0	0	logfile
✔	8K3T	36859	2024-09-25	2023-07-17	3.57	4.21	3.75	4.1	0.009	0.93	0.0	0.05	15.00	0.00	2.225	12.40	1.12	4.5	95.5	0.0	0.41	0.60	0.77	1.00	4.1	0.005	0.64	0.0	0.04	15.88	0.00	2.059	8.86	2.01	3.7	96.3	0.0	1.66	1.19	0.59	0.77	0.57	9410	1254	4	2	6	0	0	logfile
✔	8BJF	16088	2024-09-25	2022-11-04	3.0	3.24	3.01	3.3	0.005	0.76	0.0	0.05	13.71	0.01	2.273	3.58	0.38	2.4	97.6	0.0	-1.24	0.61	0.85	3.29	3.3	0.003	0.59	0.0	0.04	14.65	0.00	2.620	6.16	0.77	1.9	98.1	0.0	1.39	0.44	0.60	0.85	2.42	9741	1195	2	0	6	0	0	logfile
✔	8Toi	41453	2024-09-25	2023-08-03	2.64	2.63	2.63	3.0	0.010	1.86	0.0	0.05	24.38	0.01	2.318	2.95	0.00	3.6	96.4	0.0	-1.60	0.80	0.84	2.77	3.0	0.003	1.09	0.0	0.04	19.87	0.00	2.274	5.94	1.03	3.8	96.2	0.0	1.92	0.49	0.80	0.88	3.02	11414	1298	4	0	40	0	0	logfile
✔	8Q3i	18128	2024-09-26	2023-08-04	3.11	3.47	3.15	3.1	0.002	0.55	0.0	0.04	14.02	0.01	2.051	3.32	0.00	1.9	98.1	0.0	0.84	0.87	0.81	3.30	3.1	0.003	0.52	0.0	0.04	15.09	0.00	1.893	2.37	0.28	2.1	97.9	0.0	1.42	1.04	0.90	0.88	2.62	60317	3872	9	0	3	0	30177	logfile
✔	8V2o	42918	2024-09-27	2023-11-23	2.45	3.28	2.53	3.0	0.004	0.80	0.0	0.05	15.84	0.01	2.253	3.92	0.70	2.8	97.2	0.0	-1.34	0.76	0.89	3.74	3.0	0.002	0.59	0.0	0.04	14.42	0.00	2.029	4.64	0.76	3.1	96.9	0.0	1.72	0.28	0.74	0.88	3.87	14660	1860	10	0	10	0	0	logfile
✔	8Q8U	18261	2024-09-24	2023-08-18	3.3	3.53	3.24	3.8	0.011	1.97	3.0	0.11	12.59	0.01	2.505	0.00	0.00	6.3	93.7	0.0	-3.01	0.42	0.76	3.25	3.8	0.002	0.58	0.0	0.05	13.40	0.00	2.632	3.02	0.27	1.4	98.6	0.0	-2.29	1.34	0.45	0.77	2.76	6642	426	6	0	0	0	3396	logfile
✔	8iT0	35702	2024-09-27	2023-03-21	3.5	5.12	3.52	3.7	0.005	0.96	0.0	0.06	18.67	0.01	2.213	10.41	0.12	6.5	93.5	0.0	-2.62	0.82	0.64	1.03	3.7	0.003	0.65	0.0	0.04	19.04	0.00	2.317	13.24	1.10	5.6	94.4	0.0	-0.98	0.61	0.94	0.85	0.86	16922	1830	8	90	0	0	0	logfile
✔	8G14	29661	2024-09-25	2023-02-01	2.3	3.02	2.27	2.7	0.005	0.72	0.0	0.06	15.72	0.01	2.404	2.41	1.13	3.9	96.1	0.0	-1.00	0.89	0.94	5.31	2.7	0.002	0.49	0.0	0.05	15.68	0.00	2.619	1.21	0.00	3.0	97.0	0.0	0.78	0.19	0.88	0.93	5.29	10020	1336	4	0	0	0	0	logfile
✔	8oMR	16976	2024-09-26	2023-03-31	3.3	3.61	2.81	3.4	0.010	1.00	0.0	0.07	17.49	0.01	1.512	5.88	6.62	8.1	91.9	0.0	-1.83	0.88	0.88	3.71	3.4	0.002	0.53	0.0	0.04	18.12	0.00	2.525	4.22	3.61	4.3	95.7	0.0	-0.26	0.38	0.87	0.84	2.99	7626	772	5	75	3	0	0	logfile
✔	8WV5	37865	2024-09-27	2023-10-23	3.5	3.56	3.55	3.6	0.002	0.47	0.0	0.04	12.21	0.00	1.812	6.94	0.00	1.6	98.4	0.0	-3.38	0.81	0.85	3.23	3.5	0.004	0.67	0.0	0.05	15.19	0.00	2.207	7.28	2.00	2.5	97.5	0.0	-1.24	1.65	0.82	0.88	3.38	16340	2060	20	0	20	0	0	logfile
✔	8J9K	36110	2024-09-23	2023-05-03	3.5	3.73	3.69	3.9	0.004	0.76	0.0	0.05	15.32	0.00	2.247	7.50	0.95	8.8	91.2	0.0	-2.39	0.76	0.79	2.35	3.9	0.004	0.68	0.0	0.04	15.65	0.00	2.496	7.26	3.10	6.2	93.6	0.2	-1.46	0.44	0.77	0.80	2.37	4284	590	3	0	0	0	0	logfile
✔	8So0	40644	2024-09-29	2023-04-28	2.79961	2.85	2.77	2.9	0.002	0.41	0.0	0.04	8.08	0.00	1.427	1.87	0.08	1.9	98.1	0.0	1.96	0.78	0.87	4.67	2.9	0.003	0.54	0.0	0.04	13.69	0.00	1.885	2.94	0.83	2.0	98.0	0.0	1.14	1.09	0.78	0.87	3.97	21416	1343	5	0	2	0	10660	logfile
✔	8JAU	36134	2024-09-28	2023-05-07	3.22	3.52	3.25	3.6	0.004	0.52	0.0	0.04	14.40	0.00	2.183	7.18	0.05	4.0	96.0	0.0	-0.99	0.70	0.75	3.31	3.5	0.003	0.53	0.0	0.04	16.52	0.00	2.485	8.89	1.78	4.7	95.3	0.0	0.49	0.41	0.71	0.84	2.61	17064	2096	11	0	1	0	0	logfile
✔	8V54	42979	2024-09-27	2023-11-30	4.1	2.60	3.83	1.7	0.003	0.48	0.0	0.04	13.24	0.00	2.178	9.69	0.81	4.4	95.6	0.0	0.98	0.75	0.74	—	1.9	0.003	0.61	0.0	0.04	14.47	0.00	2.504	8.23	0.13	3.4	96.6	0.0	1.16	1.09	0.73	0.72	—	15728	1787	5	46	0	0	0	logfile
✔	8HPL	34932	2024-09-26	2022-12-12	4.29	4.66	4.34	4.3	0.012	1.78	1.0	0.09	12.90	0.01	2.269	5.50	0.00	8.9	91.1	0.0	-2.47	0.70	0.80	—	4.3	0.003	0.70	0.0	0.04	12.20	0.00	2.461	7.88	0.00	4.2	95.8	0.0	-0.17	0.79	0.70	0.80	—	12013	1757	8	0	4	0	0	logfile
✔	9FEE	50339	2024-09-24	2024-05-19	3.03	3.26	3.12	3.3	0.004	0.58	0.0	0.05	15.80	0.00	2.225	4.99	0.20	7.5	92.5	0.0	-1.40	0.76	0.87	2.79	3.3	0.003	0.61	0.0	0.05	16.17	0.00	2.558	4.46	3.22	7.2	92.8	0.0	0.06	0.91	0.75	0.86	2.61	9112	1236	4	0	0	0	0	logfile
✔	8oP2	17038	2024-09-26	2023-04-06	2.8	2.98	2.90	3.0	0.017	1.06	0.0	0.05	16.53	0.00	2.165	8.68	5.19	3.0	97.0	0.0	0.82	0.75	0.83	2.44	3.0	0.002	0.54	0.0	0.04	17.71	0.00	2.393	5.64	1.72	2.3	97.7	0.0	2.00	0.55	0.75	0.84	2.09	60280	7380	22	140	0	0	0	logfile
✔	8BJM	16089	2024-09-27	2022-11-04	2.2	2.55	2.08	2.4	0.005	0.55	0.0	0.04	13.85	0.00	2.200	4.88	1.17	0.5	99.5	0.0	2.08	0.83	0.88	5.60	2.4	0.003	0.54	0.0	0.04	16.52	0.00	2.509	3.70	1.46	0.5	99.5	0.0	2.58	0.33	0.84	0.88	5.07	16655	2050	22	0	0	498	0	logfile

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