Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9AYW	44000	2024-09-30	2024-03-08	3.0	3.21	3.04	3.2	0.005	0.78	0.0	0.06	14.17	0.01	2.290	2.83	0.00	4.0	96.0	0.0	-0.76	0.68	0.81	3.01	3.2	0.003	0.55	0.0	0.04	15.84	0.00	2.507	4.03	1.77	2.8	97.2	0.0	0.47	1.57	0.69	0.84	2.98	24813	3123	6	0	30	0	0	logfile
✔	8TSH	41592	2024-09-30	2023-08-11	3.1	3.43	—	3.3	0.003	0.57	0.0	0.04	18.66	0.00	2.003	6.81	0.19	2.4	97.6	0.0	1.77	0.72	0.86	2.52	3.3	0.004	0.57	0.0	0.04	18.77	0.00	1.935	7.61	4.15	2.3	97.7	0.0	2.12	0.23	0.73	0.87	2.34	24254	3000	14	0	4	0	0	logfile
✔	8QZP	18779	2024-09-30	2023-10-28	4.15	4.36	4.20	4.2	0.005	0.80	0.0	0.04	14.08	0.01	2.205	22.06	1.23	8.0	91.4	0.6	-1.51	0.78	0.75	—	4.2	0.004	0.75	0.0	0.04	13.81	0.01	2.371	16.68	0.00	7.7	92.2	0.1	-1.01	0.46	0.78	0.76	—	25393	3273	8	0	0	0	0	logfile
✔	8ToA	41441	2024-09-30	2023-08-03	3.69	4.05	3.88	4.0	0.007	1.08	0.0	0.06	14.71	0.01	1.051	12.20	1.62	7.4	92.3	0.3	-2.84	0.71	0.63	1.41	4.0	0.004	0.82	0.0	0.05	16.23	0.01	2.284	18.55	3.23	7.0	92.8	0.1	-2.08	1.15	0.75	0.77	1.18	16570	2109	15	0	11	0	0	logfile
✔	8XMG	38476	2024-09-30	2023-12-27	2.9	2.26	2.89	2.0	0.004	0.61	0.0	0.06	12.81	0.01	2.216	6.94	0.11	3.7	96.3	0.0	0.23	0.78	0.79	3.45	2.0	0.005	0.66	0.0	0.05	15.70	0.00	2.220	7.27	2.83	3.7	96.3	0.0	0.30	1.02	0.78	0.81	3.12	24476	3062	6	0	38	0	0	logfile
✔	8oRQ	17130	2024-09-30	2023-04-17	3.2	3.99	3.14	3.5	0.005	0.55	0.0	0.04	16.41	0.00	2.050	8.58	0.18	3.5	96.5	0.0	0.79	0.79	0.76	2.48	3.5	0.003	0.56	0.0	0.04	16.79	0.00	2.057	6.11	1.41	3.0	97.0	0.0	1.10	0.34	0.91	0.90	2.31	26195	3266	15	0	6	0	0	logfile
✔	8PTX	17924	2024-09-30	2023-07-16	2.87	2.32	3.03	2.1	0.004	0.66	0.0	0.05	15.84	0.01	2.233	6.33	0.04	5.1	94.9	0.0	-0.53	0.68	0.74	2.59	2.0	0.003	0.67	0.0	0.04	17.64	0.00	2.198	5.11	2.83	4.5	95.5	0.0	-0.40	0.43	0.80	0.82	2.53	24378	2852	7	75	7	0	0	logfile
✔	8V0P	42864	2024-09-30	2023-11-17	3.3	3.60	3.41	3.6	0.005	0.79	0.0	0.06	14.49	0.01	2.294	3.21	0.00	5.0	95.0	0.0	-1.57	0.70	0.78	2.54	3.6	0.002	0.54	0.0	0.04	15.16	0.00	2.422	4.69	1.44	4.3	95.7	0.0	-0.10	0.37	0.73	0.83	2.12	24925	3111	15	0	47	0	0	logfile
✔	8V3D	42946	2024-09-30	2023-11-27	2.95	3.20	3.00	3.2	0.003	0.51	0.0	0.04	17.45	0.00	1.999	6.13	2.59	3.0	97.0	0.0	2.24	0.63	0.82	3.08	3.2	0.004	0.58	0.0	0.04	17.59	0.00	2.363	4.68	3.17	2.6	97.4	0.0	2.49	0.29	0.63	0.82	2.82	25637	1578	5	0	1	0	13001	logfile
✔	8V0N	42862	2024-09-30	2023-11-17	3.4	3.60	3.40	3.6	0.004	0.77	0.0	0.06	14.36	0.01	2.286	2.85	0.00	5.5	94.5	0.0	-1.17	0.69	0.80	2.19	3.6	0.003	0.56	0.0	0.04	15.10	0.00	2.462	3.93	1.90	4.9	95.1	0.0	-0.16	0.34	0.69	0.81	1.97	24690	3084	15	0	45	0	0	logfile
✔	8KGM	37226	2024-09-30	2023-08-19	4.8	5.83	4.75	4.7	0.008	0.98	0.0	0.06	16.57	0.01	1.497	11.82	0.68	3.7	96.2	0.1	-2.85	0.74	0.45	—	4.7	0.003	0.72	0.0	0.05	16.38	0.00	2.094	15.58	0.00	2.8	97.2	0.0	-0.18	3.13	0.89	0.81	—	20494	2367	4	76	0	0	0	logfile
✔	8UiR	42302	2024-09-30	2023-10-10	3.2	3.38	3.20	3.4	0.004	0.71	0.0	0.05	14.13	0.01	2.307	2.38	0.04	4.0	96.0	0.0	-1.30	0.71	0.82	2.71	3.4	0.003	0.55	0.0	0.05	14.92	0.00	2.493	3.42	1.22	3.2	96.8	0.0	0.01	1.14	0.70	0.84	2.58	24879	3105	15	0	48	0	0	logfile
✔	8T4L	41035	2024-09-30	2023-06-09	3.2	3.56	3.37	3.6	0.006	1.05	0.0	0.06	11.47	0.01	2.269	2.44	0.34	2.0	98.0	0.0	1.06	0.69	0.81	2.88	3.5	0.003	0.68	0.0	0.04	13.85	0.00	2.438	7.17	2.83	2.4	97.6	0.0	0.61	0.72	0.70	0.83	2.67	24375	3039	33	0	57	0	0	logfile
✔	8K04	36757	2024-09-30	2023-07-07	2.72	3.89	2.83	3.4	0.011	0.78	0.0	0.05	12.97	0.00	2.118	10.60	0.00	8.0	92.0	0.0	0.14	0.87	0.88	3.91	3.3	0.003	0.59	0.0	0.04	14.29	0.00	2.534	4.26	1.07	4.7	95.3	0.0	1.48	0.66	0.86	0.87	3.29	24120	3140	10	0	0	0	0	logfile
✔	8SoA	40651	2024-09-30	2023-04-28	3.32	3.60	3.37	3.5	0.004	0.63	0.0	0.04	13.20	0.01	2.028	3.87	4.83	6.4	93.4	0.3	-1.21	0.77	0.73	1.63	3.5	0.003	0.55	0.0	0.04	14.91	0.00	2.413	4.20	2.87	4.0	96.0	0.0	-0.23	0.81	0.77	0.73	1.40	24039	1481	3	0	1	0	12066	logfile
✔	9B0K	44045	2024-09-30	2024-03-12	3.03	3.69	—	3.2	0.005	0.96	0.0	0.06	13.38	0.01	2.097	1.93	0.00	3.0	97.0	0.0	-2.06	0.84	0.83	2.02	3.2	0.003	0.63	0.0	0.04	14.60	0.00	1.970	6.70	0.54	3.8	96.2	0.0	1.24	0.43	0.84	0.84	1.65	23896	3020	14	0	12	0	0	logfile
✔	8U3K	41865	2024-09-30	2023-09-07	2.5	2.95	2.58	1.9	0.008	0.83	0.0	0.05	17.43	0.00	2.016	5.18	1.60	3.1	96.7	0.1	0.09	0.89	0.86	3.63	2.1	0.003	0.58	0.0	0.04	17.91	0.00	2.041	5.58	1.53	2.9	96.9	0.1	1.49	0.39	0.90	0.88	3.21	24990	2952	7	55	1	0	0	logfile
✘	8XUT	38683	2024-09-30	2024-01-14	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25149	3126	6	0	49	0	0	logfile
✔	8SL6	40574	2024-09-30	2023-04-21	4.3	4.65	4.38	4.4	0.005	0.71	0.0	0.04	11.90	0.00	2.128	11.89	0.00	4.5	95.5	0.0	-1.39	0.70	0.79	—	4.4	0.002	0.56	0.0	0.04	11.65	0.00	2.517	5.72	0.00	3.7	96.3	0.0	2.20	1.79	0.69	0.78	—	23954	3634	4	0	0	0	0	logfile
✔	8Z99	39857	2024-09-30	2024-04-22	3.2	3.46	3.29	3.5	0.009	1.27	1.0	0.08	17.28	0.02	2.058	7.16	2.03	5.2	94.8	0.0	-2.48	0.71	0.81	2.51	3.5	0.005	0.77	1.0	0.04	17.63	0.00	1.919	11.00	3.37	4.4	95.6	0.0	-0.50	1.05	0.74	0.84	2.48	25517	3030	24	100	9	0	0	logfile

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