Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PW9	20501	2024-09-24	2019-07-22	4.03	4.12	—	4.1	0.007	1.23	0.0	0.24	15.09	0.01	1.781	6.70	1.81	4.4	95.6	0.0	-4.47	0.71	0.70	—	4.1	0.003	0.82	0.0	0.05	14.39	0.00	2.376	11.69	0.00	3.8	96.2	0.0	-1.20	2.49	0.73	0.74	—	8836	1075	5	0	3	0	0	logfile
✘	7YG9	33812	2024-09-24	2022-07-11	2.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8630	0	4	404	8	0	0	logfile
✔	8BX5	16308	2024-09-26	2022-12-07	4.2	4.41	4.00	4.3	0.003	0.78	1.0	0.06	14.22	0.01	2.218	14.11	0.63	3.9	96.1	0.0	-0.69	0.60	0.73	—	4.3	0.003	0.75	0.0	0.05	13.30	0.00	2.316	12.82	0.16	3.7	96.1	0.1	-0.49	2.12	0.63	0.76	—	12527	1630	13	0	4	4	0	logfile
✔	7YCi	33740	2024-09-24	2022-07-01	2.98	4.31	3.09	3.2	0.002	0.48	0.0	0.02	24.35	0.00	1.521	15.79	0.00	0.0	0.0	0.0	—	0.93	0.84	—	3.3	0.007	0.68	0.0	0.04	24.68	0.00	1.863	22.55	0.00	0.0	0.0	0.0	—	1.23	0.95	0.90	—	8474	0	3	395	4	0	0	logfile
✔	7CGN	30358	2024-09-27	2020-07-01	4.3	4.32	—	4.2	0.006	1.12	0.0	0.06	16.92	0.01	2.225	7.81	6.36	9.4	89.8	0.7	-5.60	0.68	0.76	—	4.2	0.003	0.80	0.0	0.05	14.63	0.01	2.449	10.85	0.00	8.7	91.2	0.1	-1.62	1.79	0.68	0.78	—	15854	2092	14	0	2	0	0	logfile
✔	6A69	6987	2024-09-24	2018-06-27	4.11	4.21	—	4.1	0.011	1.48	0.0	0.07	11.87	0.01	2.275	7.51	1.81	13.5	86.4	0.1	-4.69	0.61	0.81	—	4.2	0.003	0.78	0.0	0.04	12.54	0.01	2.546	10.63	0.00	8.7	91.1	0.2	-1.16	0.83	0.60	0.79	—	7851	1038	3	0	1	0	0	logfile
✔	7TJZ	25947	2024-09-28	2022-01-17	4.4	7.00	4.54	4.2	0.019	2.21	0.0	0.00	6.67	0.01	2.384	0.19	0.00	4.2	94.2	1.6	-0.41	0.58	0.63	—	4.2	0.014	1.15	0.0	0.00	6.43	0.01	2.377	5.89	0.00	12.4	87.2	0.3	-1.50	0.78	0.81	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	7D08	30526	2024-09-28	2020-09-09	4.0	4.11	—	4.0	0.008	1.25	2.0	0.06	18.19	0.01	1.987	24.08	9.39	11.1	87.3	1.6	-5.80	0.77	0.80	—	4.0	0.006	0.88	0.0	0.05	17.29	0.00	2.366	12.17	5.18	10.9	89.0	0.1	-2.67	0.79	0.77	0.81	—	17802	2374	14	0	2	0	0	logfile
✔	6RVY	10018	2024-09-25	2019-06-03	4.13	4.25	4.04	4.1	0.006	1.03	0.0	0.06	14.69	0.01	2.290	6.87	0.49	7.5	92.5	0.0	-5.00	0.64	0.81	—	4.1	0.003	0.76	0.0	0.04	13.35	0.00	2.515	10.36	0.00	4.5	95.5	0.0	-0.40	0.70	0.64	0.81	—	9627	1290	3	0	0	0	0	logfile
✔	7ETW	31303	2024-09-23	2021-05-14	4.1	4.06	—	4.0	0.009	1.21	1.0	0.08	13.70	0.01	1.843	16.06	1.36	11.6	86.4	1.9	-5.46	0.53	0.72	—	4.0	0.003	0.79	0.0	0.04	11.57	0.00	2.426	8.14	0.00	5.7	93.7	0.6	-0.22	3.39	0.54	0.74	—	4952	680	4	0	6	0	0	logfile
✔	5ZBG	6911	2024-09-29	2018-02-11	4.36	4.83	—	4.5	0.005	0.70	0.0	0.04	13.89	0.00	2.258	7.73	4.79	7.0	92.7	0.3	-2.22	0.69	0.81	—	4.5	0.003	0.65	0.0	0.04	12.66	0.00	2.514	8.62	0.00	4.3	95.7	0.0	1.89	0.97	0.69	0.82	—	21260	2680	4	0	0	0	0	logfile
✘	7Z4Z	14511	2024-09-23	2022-03-06	4.0	3.29	3.87	3.9	0.003	0.75	1.0	0.05	14.17	0.01	2.305	11.39	0.00	2.1	97.3	0.6	-4.82	0.61	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4817	673	4	0	0	0	0	logfile
✔	7TK0	25948	2024-09-28	2022-01-17	4.4	6.63	4.39	4.1	0.019	2.21	0.0	0.00	6.55	0.01	2.394	0.08	0.00	3.9	94.5	1.5	-0.40	0.58	0.62	—	4.1	0.005	0.85	0.0	0.00	5.25	0.00	2.390	1.89	0.00	9.6	90.1	0.3	-0.13	0.79	0.78	0.81	—	20220	5054	27	0	0	0	0	logfile
✔	7TJY	25946	2024-09-28	2022-01-17	3.8	4.84	3.78	3.6	0.020	2.29	0.0	0.00	6.75	0.01	2.333	0.12	0.00	4.3	94.3	1.5	-0.54	0.59	0.68	—	3.5	0.006	0.90	0.0	0.00	5.46	0.00	2.448	1.35	0.00	10.8	89.0	0.3	0.00	1.47	0.82	0.86	—	20228	5056	27	0	0	0	0	logfile
✔	5YUD	6845	2024-09-25	2017-11-21	4.28	4.47	—	4.3	0.008	1.31	0.0	0.06	10.62	0.01	1.301	55.14	0.17	16.1	82.8	1.1	-5.50	0.76	0.74	—	4.3	0.004	0.92	0.0	0.05	13.76	0.00	2.418	18.54	0.00	11.4	88.1	0.5	-2.66	1.75	0.77	0.78	—	10510	1313	3	0	1	0	0	logfile
✔	6WGC	21662	2024-09-30	2020-04-05	4.3	4.58	—	4.4	0.006	0.99	0.0	0.05	18.91	0.01	1.558	9.33	0.04	7.3	92.6	0.1	-4.72	0.78	0.73	—	4.4	0.003	0.71	0.0	0.04	17.39	0.00	2.084	12.79	0.04	5.8	94.2	0.0	-1.30	1.54	0.79	0.78	—	24605	2804	15	82	4	0	0	logfile
✔	7TKM	25974	2024-09-28	2022-01-17	4.5	7.58	4.88	4.3	0.019	2.22	0.0	0.00	6.78	0.01	2.385	0.12	0.00	4.3	94.2	1.5	-0.44	0.59	0.59	—	4.3	0.003	0.78	0.0	0.00	5.11	0.00	2.272	2.00	0.00	7.9	91.8	0.3	0.14	1.51	0.82	0.82	—	20227	5056	27	0	0	0	0	logfile
✔	7XSN	33428	2024-09-24	2022-05-14	3.01	4.02	3.04	3.2	0.013	1.06	0.0	0.05	25.09	0.01	2.252	5.79	0.00	0.0	0.0	0.0	—	0.91	0.84	—	3.2	0.006	0.63	0.0	0.03	24.72	0.00	2.130	17.85	0.00	0.0	0.0	0.0	—	0.29	0.92	0.87	—	8279	0	1	387	0	0	0	logfile
✔	6VEF	21156	2024-09-26	2019-12-31	4.08	4.14	—	4.1	0.009	1.19	0.0	0.07	11.76	0.01	1.866	12.07	0.00	10.4	89.5	0.1	-4.48	0.77	0.80	—	4.1	0.005	0.80	0.0	0.05	13.19	0.00	2.324	14.41	0.07	9.2	90.8	0.0	-2.06	1.05	0.77	0.80	—	13414	1688	4	0	4	0	0	logfile
✔	7KAL	22774	2024-09-25	2020-10-01	4.0	4.57	4.10	4.2	0.002	0.51	0.0	0.04	11.87	0.00	2.262	5.74	0.00	2.6	97.3	0.1	-0.72	0.63	0.82	—	4.2	0.003	0.67	0.0	0.04	14.49	0.00	2.534	7.26	1.30	2.9	97.1	0.1	1.95	0.57	0.63	0.83	—	10789	1429	7	0	0	0	0	logfile

• ← previous
• Page 3 of 539
• next →