Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9FAA	50270	2024-09-24	2024-05-10	3.6	3.34	3.60	3.9	0.010	1.10	0.0	0.05	11.73	0.01	2.020	10.96	0.00	1.7	98.3	0.0	-4.21	0.52	0.75	3.32	3.9	0.003	0.66	0.0	0.05	13.28	0.00	2.471	6.73	1.84	6.2	93.8	0.0	-4.00	1.11	0.52	0.75	2.81	8695	590	10	0	5	0	4235	logfile
✔	9F9Y	50263	2024-09-30	2024-05-09	2.8	3.34	2.80	3.1	0.004	0.52	0.0	0.04	10.39	0.00	2.261	5.28	0.52	2.3	97.7	0.0	0.45	0.82	0.90	3.88	3.1	0.003	0.55	0.0	0.04	12.09	0.00	2.567	5.34	1.31	2.3	97.7	0.0	0.56	0.39	0.82	0.90	3.31	24810	3078	15	0	57	0	0	logfile
✔	9F6L	50228	2024-09-25	2024-05-01	3.9	4.20	3.90	4.1	0.003	0.67	0.0	0.04	16.41	0.01	2.141	1.48	0.00	1.9	98.1	0.0	-1.02	0.75	0.80	1.37	4.1	0.002	0.61	0.0	0.04	17.93	0.00	2.339	4.32	1.11	1.5	98.5	0.0	1.49	0.69	0.76	0.82	0.71	9639	1118	4	26	3	0	0	logfile
✔	9F6J	50226	2024-09-25	2024-05-01	3.9	4.11	3.87	4.0	0.003	0.64	0.0	0.04	16.08	0.01	2.253	1.83	0.00	1.1	98.9	0.0	-1.09	0.75	0.79	1.83	4.0	0.003	0.62	0.0	0.04	17.92	0.00	2.525	4.86	2.12	2.2	97.8	0.0	0.64	1.68	0.76	0.81	1.61	9751	1118	4	32	1	0	0	logfile
✔	9F45	50184	2024-09-25	2024-04-26	3.74	4.61	—	3.8	0.003	0.50	0.0	0.04	11.49	0.00	2.145	8.38	2.01	2.6	97.3	0.1	2.22	0.90	0.81	0.74	3.8	0.003	0.67	0.0	0.04	13.64	0.00	2.331	11.71	1.52	2.9	97.1	0.0	1.71	1.49	0.91	0.83	0.91	56848	7140	10	0	2	0	0	logfile
✔	9F44	50183	2024-09-25	2024-04-26	3.68	4.36	3.71	3.9	0.003	0.51	0.0	0.04	13.42	0.00	2.161	7.02	1.65	2.7	97.3	0.0	2.01	0.90	0.80	0.86	4.0	0.003	0.65	0.0	0.04	14.84	0.00	2.443	10.04	1.74	2.7	97.2	0.1	1.72	0.56	0.90	0.82	0.97	56848	7140	10	0	2	0	0	logfile
✘	9F43	50182	2024-09-24	2024-04-26	3.49	3.69	3.45	3.7	0.002	0.49	0.0	0.04	14.27	0.00	2.074	5.62	0.21	2.3	97.7	0.0	1.09	0.63	0.77	1.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8465	1061	2	0	0	0	0	logfile
✔	9F42	50181	2024-09-24	2024-04-26	3.27	3.49	3.23	3.5	0.002	0.48	0.0	0.04	12.23	0.00	2.189	6.92	1.81	3.0	97.0	0.0	0.35	0.59	0.74	2.02	3.5	0.003	0.58	0.0	0.04	15.14	0.00	2.580	10.58	3.20	3.9	96.1	0.0	0.07	1.42	0.55	0.74	2.15	8465	1061	2	0	0	0	0	logfile
✔	9F2K	50149	2024-09-27	2024-04-23	2.48	2.66	2.53	2.7	0.004	0.64	0.0	0.04	16.42	0.00	2.026	10.48	1.14	2.2	97.8	0.0	-0.09	0.65	0.83	4.08	2.7	0.005	0.68	0.0	0.05	16.61	0.00	2.495	6.14	2.63	2.0	98.0	0.0	0.58	0.89	0.66	0.84	4.91	16184	2052	8	0	4	0	0	logfile
✔	9EZ8	50071	2024-09-28	2024-04-11	2.7	2.74	2.62	2.7	0.003	0.54	0.0	0.05	10.65	0.02	2.160	5.49	3.36	0.0	100.0	0.0	2.00	0.82	0.87	3.78	2.7	0.003	0.49	0.0	0.05	16.16	0.00	2.573	5.77	2.77	1.6	98.4	0.0	0.93	0.55	0.80	0.88	3.62	69480	9420	60	0	0	0	0	logfile
✔	9EWX	50025	2024-09-29	2024-04-05	3.17	2.84	3.08	3.0	0.002	0.42	0.0	0.04	17.57	0.00	2.031	3.78	0.88	0.7	99.3	0.0	2.80	0.68	0.88	2.05	3.0	0.004	0.54	0.0	0.05	16.75	0.00	2.540	5.78	4.31	2.4	97.6	0.0	2.71	0.96	0.68	0.89	1.78	23989	3289	23	0	0	0	0	logfile
✔	9EWQ	50022	2024-09-26	2024-04-04	3.0	3.34	3.05	3.3	0.004	0.57	0.0	0.05	13.59	0.00	2.141	4.88	0.08	5.2	94.8	0.0	-1.34	0.82	0.88	4.02	3.3	0.004	0.57	0.0	0.05	15.08	0.00	2.303	3.67	2.11	4.7	95.3	0.0	-1.15	0.23	0.77	0.89	3.55	11904	1540	4	0	0	0	0	logfile
✔	9EUY	19989	2024-09-24	2024-03-28	2.95	3.23	3.00	3.3	0.003	0.74	0.0	0.05	11.99	0.01	2.311	3.09	0.24	1.8	98.2	0.0	0.41	0.69	0.83	3.53	3.3	0.003	0.93	0.0	0.04	16.08	0.00	1.321	6.69	2.27	1.6	98.4	0.0	1.77	0.65	0.67	0.83	2.64	7846	984	4	0	2	0	0	logfile
✔	9EUT	19981	2024-09-25	2024-03-28	2.95	3.19	—	3.1	0.005	0.76	0.0	0.05	12.33	0.01	2.158	3.55	0.56	2.2	97.8	0.0	-0.11	0.71	0.78	2.76	3.2	0.003	0.67	0.0	0.04	15.44	0.00	2.566	7.55	1.53	1.7	98.3	0.0	1.59	1.13	0.72	0.80	2.65	11456	1456	4	0	2	0	0	logfile
✔	9EUP	19979	2024-09-27	2024-03-27	3.0	3.45	3.02	3.4	0.010	0.82	0.0	0.05	13.77	0.01	2.130	5.45	0.12	3.3	96.7	0.0	-1.46	0.67	0.83	4.18	3.4	0.004	0.57	0.0	0.04	14.30	0.01	2.119	4.72	1.11	3.1	96.9	0.0	0.43	0.34	0.56	0.77	3.49	14966	965	4	0	6	0	7364	logfile
✔	9ERN	19927	2024-09-23	2024-03-24	2.5	2.72	2.52	2.6	0.009	1.38	0.0	0.08	11.58	0.01	2.539	0.00	3.03	2.7	97.3	0.0	-2.81	0.43	0.92	6.38	2.7	0.004	0.65	0.0	0.05	16.39	0.00	2.595	1.99	1.26	1.1	98.9	0.0	-1.72	0.98	0.43	0.91	5.64	3444	450	6	0	0	0	0	logfile
✔	9ERM	19926	2024-09-23	2024-03-24	2.3	2.49	2.28	2.5	0.009	1.43	0.0	0.09	11.15	0.01	2.641	0.85	3.03	4.1	95.9	0.0	-2.04	0.45	0.94	7.10	2.5	0.002	0.62	0.0	0.05	16.47	0.00	2.640	3.07	1.52	2.5	97.5	0.0	-1.27	0.54	0.43	0.93	6.40	2870	375	5	0	0	0	0	logfile
✘	9EQ5	19897	2024-09-27	2024-03-20	2.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15796	2052	8	0	0	0	0	logfile
✔	9EoH	19855	2024-09-23	2024-03-14	2.8	3.08	2.71	3.1	0.009	1.45	6.0	0.09	11.76	0.01	2.465	4.31	0.00	9.7	90.3	0.0	-3.95	0.48	0.89	6.19	3.1	0.004	0.82	0.0	0.05	17.16	0.00	2.553	8.04	2.31	4.6	95.4	0.0	-2.68	1.15	0.42	0.88	6.13	3414	444	6	0	0	0	0	logfile
✔	9EoG	19854	2024-09-23	2024-03-14	3.0	3.00	2.79	3.2	0.009	1.63	6.0	0.10	12.85	0.01	2.445	5.03	4.48	6.7	93.3	0.0	-4.10	0.39	0.90	4.14	3.2	0.006	0.82	0.0	0.05	15.52	0.00	2.554	9.64	1.00	5.1	94.9	0.0	-1.95	1.09	0.37	0.88	3.73	3522	462	6	0	0	0	0	logfile

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