Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6JBJ	9791	2024-09-25	2019-01-25	3.6	3.75	—	3.7	0.008	1.04	0.0	0.06	16.77	0.01	2.206	10.64	0.00	9.1	90.9	0.0	-6.19	0.65	0.83	2.03	3.7	0.003	0.73	0.0	0.04	18.16	0.00	2.562	14.06	3.06	8.2	91.8	0.0	-1.87	1.17	0.64	0.82	1.47	9166	1130	4	0	2	0	0	logfile
✔	6JBH	9790	2024-09-24	2019-01-25	3.94	4.06	—	4.0	0.007	1.23	0.0	0.07	12.50	0.03	2.260	6.09	0.53	14.3	85.5	0.2	-5.84	0.68	0.81	2.48	4.0	0.003	0.96	0.0	0.05	16.11	0.00	2.430	11.27	2.98	14.8	85.2	0.0	-2.59	1.63	0.68	0.81	1.61	8592	1062	4	0	0	0	0	logfile
✔	6JB1	9787	2024-09-25	2019-01-25	3.3	3.82	—	3.7	0.008	1.06	0.0	0.58	23.68	0.00	2.034	10.49	6.21	4.9	95.1	0.0	-2.18	0.61	0.66	1.59	3.7	0.005	0.96	0.0	0.08	19.54	0.00	2.426	10.48	5.03	4.6	95.4	0.0	0.95	0.69	0.67	0.76	1.43	52028	6772	16	0	68	0	0	logfile
✔	6J9E	9785	2024-09-30	2019-01-22	3.41	3.55	3.48	3.5	0.003	0.61	0.0	0.04	14.74	0.01	2.198	2.44	0.05	3.0	97.0	0.0	-3.74	0.76	0.79	1.49	3.5	0.002	0.59	0.0	0.04	16.98	0.00	2.132	4.78	2.35	2.9	97.1	0.0	0.22	0.61	0.79	0.83	1.55	24427	3203	11	63	3	0	0	logfile
✔	6J99	9783	2024-09-28	2019-01-22	4.1	4.24	—	4.2	0.008	0.98	1.0	0.05	27.10	0.01	2.204	7.71	0.00	8.0	92.0	0.0	-2.88	0.65	0.52	—	4.1	0.004	0.77	0.0	0.04	27.15	0.01	2.093	16.45	0.00	6.0	94.0	0.0	-0.33	1.66	0.77	0.77	—	15266	1164	12	289	0	0	0	logfile
✔	6J8G	9781	2024-09-26	2019-01-19	3.2	3.35	—	3.3	0.010	1.54	1.0	0.10	21.73	0.01	1.886	58.56	27.17	2.0	96.6	1.3	2.85	0.60	0.78	1.54	3.3	0.003	0.68	0.0	0.04	18.51	0.00	2.387	6.34	5.59	3.9	95.8	0.2	1.47	1.37	0.60	0.83	1.56	11763	1433	8	0	12	0	0	logfile
✔	6J8H	9781	2024-09-26	2019-01-19	3.2	3.35	—	3.3	0.010	1.54	1.0	0.10	21.72	0.01	1.886	58.60	27.17	2.0	96.6	1.3	2.87	0.60	0.78	1.53	3.3	0.004	0.72	0.0	0.04	18.46	0.00	2.361	6.42	5.59	4.2	95.6	0.3	1.23	1.36	0.60	0.84	1.62	11763	1433	8	0	12	0	0	logfile
✔	6J8E	9780	2024-09-26	2019-01-18	3.0	3.18	—	3.2	0.008	1.43	4.0	0.08	14.77	0.01	1.927	13.58	5.14	6.4	92.6	1.0	-5.60	0.61	0.77	3.02	3.2	0.003	0.81	0.0	0.04	16.28	0.00	2.364	7.27	2.96	5.9	93.8	0.2	0.59	0.84	0.60	0.85	2.01	10482	1277	7	0	10	0	0	logfile
✔	6J3Z	9776	2024-09-30	2019-01-07	3.6	3.78	—	3.6	0.019	1.82	4.0	0.15	20.86	0.01	1.392	13.61	0.28	4.3	95.7	0.0	-5.08	0.80	0.81	3.43	3.6	0.004	0.72	0.0	0.04	17.47	0.00	1.463	12.35	2.27	3.6	96.4	0.0	0.20	0.75	0.80	0.82	2.67	74619	6984	97	0	978	0	0	logfile
✔	6J3Y	9775	2024-09-29	2019-01-07	3.3	3.49	—	3.4	0.019	1.77	4.0	0.14	19.66	0.01	1.372	10.02	0.32	4.1	95.9	0.0	-5.09	0.77	0.84	3.85	3.4	0.003	0.67	0.0	0.04	16.85	0.00	2.219	10.71	1.40	3.5	96.5	0.0	0.50	0.65	0.78	0.87	2.78	70136	6984	90	0	428	0	0	logfile
✔	6J0M	9764	2024-09-26	2018-12-24	3.9	3.79	—	3.8	0.007	0.98	0.0	0.06	15.91	0.01	2.282	6.73	0.87	5.2	94.8	0.0	-4.05	0.52	0.82	1.83	3.8	0.004	0.92	1.0	0.04	18.01	0.00	2.342	11.80	3.76	4.5	95.5	0.0	-1.89	1.29	0.52	0.82	1.37	12585	1605	3	0	0	0	0	logfile
✔	6J0F	9763	2024-09-28	2018-12-24	3.8	3.95	—	3.9	0.007	1.04	0.0	0.06	15.76	0.01	2.265	5.30	2.19	4.9	95.1	0.0	-4.54	0.64	0.86	2.41	3.9	0.004	0.74	0.0	0.05	17.24	0.00	2.290	8.29	4.66	6.6	93.4	0.0	-1.31	1.70	0.64	0.86	2.00	19314	2472	12	0	0	0	0	logfile
✔	6iZV	9758	2024-09-23	2018-12-20	4.2	4.27	—	4.2	0.005	0.90	0.0	0.05	10.55	0.01	2.170	5.77	0.00	4.9	95.1	0.0	-3.60	0.68	0.81	—	4.1	0.005	0.75	0.0	0.05	13.08	0.00	1.905	12.35	0.00	8.1	91.9	0.0	-0.99	0.97	0.70	0.83	—	5624	698	4	0	4	0	0	logfile
✔	6iYC	9751	2024-09-25	2018-12-14	2.6	2.84	—	2.9	0.011	1.20	0.0	0.07	15.02	0.01	2.053	3.52	0.88	7.5	92.3	0.2	-3.74	0.71	0.85	3.81	2.8	0.004	0.76	0.0	0.05	15.78	0.00	2.492	5.96	2.81	5.2	94.7	0.1	0.49	1.29	0.71	0.87	2.66	11037	1355	14	0	26	0	0	logfile
✔	6iY3	9749	2024-09-27	2018-12-12	3.67	3.77	—	3.7	0.009	1.08	0.0	0.06	26.12	0.01	2.260	5.55	0.42	8.2	91.5	0.2	-3.98	0.77	0.80	2.08	3.7	0.005	0.71	0.0	0.04	26.02	0.00	2.480	11.14	2.46	7.0	93.0	0.0	0.20	0.76	0.78	0.81	0.98	17073	1365	12	294	1	0	0	logfile
✔	6iY2	9748	2024-09-27	2018-12-12	3.47	3.59	—	3.5	0.010	1.09	0.0	0.06	25.75	0.01	2.248	5.61	0.59	7.6	92.2	0.2	-4.13	0.79	0.81	2.26	3.5	0.003	0.65	0.0	0.04	25.93	0.00	2.139	11.25	2.04	5.5	94.5	0.0	0.43	1.47	0.80	0.84	1.08	17088	1367	12	294	1	0	0	logfile
✔	6iXH	9747	2024-09-24	2018-12-10	4.0	4.11	—	4.0	0.010	1.11	0.0	0.06	15.28	0.01	2.228	6.64	0.60	7.6	92.0	0.4	-4.89	0.84	0.87	—	4.0	0.005	0.79	0.0	0.05	16.84	0.00	2.286	10.23	3.55	6.6	93.3	0.0	-1.97	0.60	0.84	0.86	—	52280	6785	25	0	0	0	0	logfile
✔	6iWW	9743	2024-09-25	2018-12-08	3.9	3.82	—	3.8	0.008	1.09	0.0	0.06	13.48	0.01	2.301	5.79	0.00	4.2	95.8	0.0	-4.19	0.63	0.81	2.15	3.8	0.006	1.04	2.0	0.04	15.57	0.01	2.201	15.48	2.30	3.1	96.9	0.0	0.66	1.51	0.64	0.82	1.32	10227	1386	9	0	3	0	0	logfile
✔	6iUG	9734	2024-09-26	2018-11-28	3.9	3.96	—	3.8	0.005	0.90	0.0	0.05	10.73	0.01	2.105	7.72	0.96	8.4	91.6	0.0	-3.83	0.72	0.83	1.84	3.8	0.004	0.77	0.0	0.05	14.50	0.00	1.944	13.66	1.60	8.6	91.4	0.0	-0.76	0.77	0.72	0.84	1.51	14585	1855	10	0	10	0	0	logfile
✔	6iTC	9731	2024-09-26	2018-11-21	3.45	3.58	—	3.5	0.016	1.48	5.0	0.08	13.87	0.01	1.574	8.12	1.02	9.0	90.9	0.1	-4.38	0.69	0.77	1.77	3.5	0.004	0.95	1.0	0.05	16.25	0.00	2.017	11.75	4.07	7.0	93.0	0.0	-0.83	1.45	0.72	0.83	1.82	13844	1738	10	0	6	0	0	logfile

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