Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6ZJA	11233	2024-09-30	2020-06-28	2.0	2.10	2.09	2.1	0.006	0.86	0.0	0.06	14.31	0.01	1.974	0.60	1.37	4.1	95.9	0.0	-0.40	0.79	0.87	6.97	2.1	0.003	0.68	0.0	0.05	16.09	0.00	1.868	1.30	0.68	4.2	95.8	0.0	0.23	0.39	0.78	0.90	6.59	77951	9684	60	0	36	3191	0	logfile
✔	3JAM	3047	2024-09-29	2015-06-17	3.46	3.54	3.52	3.5	0.007	1.32	63.0	0.10	25.28	0.01	1.398	7.14	13.45	10.2	86.0	3.8	-1.98	0.64	0.83	1.53	3.5	0.003	0.71	0.0	0.04	23.82	0.01	1.880	9.59	5.49	8.9	90.1	1.0	-0.86	0.69	0.67	0.86	1.52	77850	5056	42	1780	83	0	0	logfile
✔	8Q30	18119	2024-09-30	2023-08-03	3.22	3.61	3.25	3.5	0.006	0.82	3.0	0.06	13.15	0.01	1.978	8.06	0.45	0.9	99.1	0.0	1.02	0.77	0.89	3.64	3.5	0.003	0.63	0.0	0.05	13.11	0.00	2.510	6.15	2.13	1.3	98.7	0.0	1.47	1.12	0.78	0.90	3.42	77784	10152	288	0	408	0	0	logfile
✔	3J80	2764	2024-09-30	2014-08-28	3.75	3.87	3.84	3.8	0.007	1.36	43.0	0.11	26.05	0.01	1.747	9.35	13.53	12.2	83.2	4.6	-2.33	0.79	0.86	0.90	3.7	0.007	0.87	0.0	0.04	24.84	0.01	1.724	19.47	6.10	11.3	87.3	1.4	-1.93	1.59	0.78	0.82	0.84	77716	5039	41	1779	70	0	0	logfile
✔	8ETH	24409	2024-09-29	2022-10-17	3.8	2.97	—	2.9	0.006	0.62	0.0	0.04	21.94	0.01	2.088	10.10	0.53	5.2	94.6	0.2	-0.47	0.63	0.61	2.70	2.9	0.002	0.58	0.0	0.04	21.74	0.00	2.068	8.45	2.71	4.1	95.7	0.2	0.19	1.12	0.62	0.59	2.28	77577	6161	42	1508	1	0	0	logfile
✔	6Z6o	11101	2024-09-30	2020-05-28	3.8	4.70	—	4.2	0.006	0.92	0.0	0.05	15.43	0.01	2.104	8.05	0.96	7.9	92.1	0.0	-3.37	0.84	0.81	0.94	4.2	0.003	0.67	0.0	0.04	16.39	0.00	1.995	10.86	1.76	6.2	93.8	0.0	-0.20	0.52	0.84	0.81	0.82	77516	9628	24	0	8	0	0	logfile
✔	5MQ0	3541	2024-09-30	2016-12-19	4.17	4.40	—	4.2	0.010	1.54	21.0	0.11	17.52	0.01	0.679	7.92	2.73	7.7	91.4	0.9	-2.01	0.68	0.56	—	4.1	0.004	0.73	0.0	0.04	17.00	0.00	1.880	15.41	0.00	5.7	94.3	0.1	0.03	2.10	0.74	0.74	—	77441	9673	53	448	99	0	0	logfile
✔	8UXX	42788	2024-09-30	2023-11-11	3.2	3.48	3.27	3.5	0.012	1.91	8.0	0.10	15.07	0.02	1.821	0.17	2.29	4.4	95.5	0.1	-2.07	0.64	0.74	3.38	3.5	0.003	0.62	0.0	0.04	15.97	0.00	0.978	4.25	1.64	3.3	96.7	0.0	-0.16	2.06	0.72	0.84	2.45	77402	4916	26	0	27	5	38340	logfile
✔	8iYL	35825	2024-09-30	2023-04-05	3.0	3.35	3.11	3.2	0.004	0.66	0.0	0.05	18.10	0.01	2.040	11.95	7.11	7.1	92.3	0.6	-1.70	0.78	0.84	2.48	3.2	0.006	0.78	2.0	0.05	17.93	0.01	2.071	10.13	4.65	8.0	91.4	0.6	-1.71	0.26	0.79	0.86	2.68	77370	10248	45	0	3	0	0	logfile
✔	8iYK	35824	2024-09-30	2023-04-05	2.95	3.32	3.08	3.2	0.003	0.64	1.0	0.05	18.22	0.00	2.066	11.71	7.67	7.1	92.3	0.6	-1.67	0.78	0.87	2.43	3.2	0.004	0.77	4.0	0.05	17.84	0.00	1.964	8.45	5.45	7.1	92.5	0.4	-1.45	0.25	0.78	0.87	2.47	77370	10248	45	0	3	0	0	logfile
✔	8UXW	42787	2024-09-30	2023-11-11	2.7	2.92	2.78	3.0	0.013	1.92	15.0	0.10	15.35	0.02	1.860	0.28	2.69	3.0	97.0	0.0	-1.20	0.48	0.72	4.73	3.0	0.003	0.61	0.0	0.04	16.70	0.00	1.868	3.16	1.48	2.0	98.0	0.0	0.75	1.11	0.62	0.85	3.86	77359	4916	25	0	20	0	38330	logfile
✘	8C8Y	16495	2024-09-29	2023-01-21	3.03	3.24	3.11	3.1	0.002	0.40	0.0	0.03	22.85	0.00	1.796	4.85	0.00	6.2	93.7	0.1	0.29	0.77	0.81	2.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	77316	2566	25	2667	0	0	0	logfile
✔	6G5i	4353	2024-09-29	2018-03-29	3.5	3.78	—	3.5	0.009	1.25	1.0	0.06	22.06	0.01	1.824	8.06	0.69	10.1	89.8	0.1	-4.49	0.77	0.73	1.91	3.5	0.004	0.74	0.0	0.04	22.60	0.00	2.136	12.94	2.83	6.6	93.4	0.0	-2.13	0.78	0.83	0.81	1.55	77185	5246	39	1657	3	0	0	logfile
✘	6ZUo	11440	2024-09-29	2020-07-23	3.1	3.60	—	3.2	0.008	1.11	0.0	0.06	21.89	0.01	2.204	6.23	0.40	5.7	94.2	0.1	-4.11	0.67	0.80	1.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	77098	5217	38	1665	3	0	0	logfile
✘	6ZXH	11521	2024-09-30	2020-07-29	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	76979	5195	45	1651	135	0	0	logfile
✘	8TVY	41655	2024-09-30	2023-08-18	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	76945	4692	23	103	9	0	37409	logfile
✔	8XXM	38753	2024-09-29	2024-01-18	3.2	3.17	3.15	3.1	0.005	0.89	0.0	0.05	22.16	0.01	2.081	6.64	0.02	7.2	92.6	0.2	-2.18	0.85	0.83	2.41	3.1	0.003	0.65	0.0	0.04	22.30	0.00	1.973	9.37	2.14	6.8	93.0	0.1	-0.94	0.37	0.88	0.88	1.90	76934	5062	42	1723	26	0	0	logfile
✔	6K9Q	9952	2024-09-30	2019-06-17	3.1	3.28	—	3.5	0.007	1.09	4.0	0.06	11.35	0.01	1.554	9.55	0.29	6.3	93.6	0.1	-3.33	0.51	0.77	2.45	3.5	0.004	0.82	3.0	0.04	14.66	0.00	1.905	13.72	3.81	5.4	94.6	0.0	-1.30	0.56	0.51	0.80	1.87	76902	10451	26	0	0	0	0	logfile
✔	7LFH	23302	2024-09-30	2021-01-17	4.2	3.38	—	4.1	0.004	0.95	12.0	0.05	13.99	0.01	2.078	29.03	0.00	13.1	86.8	0.1	-2.88	0.61	0.49	—	4.1	0.003	0.88	0.0	0.05	14.12	0.00	2.370	19.89	0.05	11.0	89.0	0.0	-2.51	1.03	0.65	0.66	—	76884	9672	12	0	0	0	0	logfile
✔	6J6H	0687	2024-09-30	2019-01-15	3.6	3.74	—	3.6	0.008	0.97	2.0	0.09	17.34	0.01	1.805	16.37	2.68	4.4	95.1	0.5	-3.20	0.62	0.67	1.90	3.6	0.003	0.70	0.0	0.04	18.07	0.00	1.905	9.37	1.84	4.1	95.9	0.1	1.06	0.85	0.65	0.75	1.55	76847	8644	47	551	14	0	0	logfile

• ← previous
• Page 3 of 539
• next →