Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SYG	25527	2024-09-30	2021-11-25	4.3	3.38	4.15	3.2	0.003	0.74	0.0	0.04	22.16	0.01	2.257	4.87	0.00	5.1	94.8	0.0	-2.54	0.65	0.65	—	3.2	0.005	0.78	0.0	0.04	22.35	0.01	2.155	13.72	0.05	8.2	91.8	0.0	-1.82	1.10	0.66	0.68	—	78773	4891	38	1859	2	0	0	logfile
✔	7SYN	25534	2024-09-30	2021-11-25	4.0	3.26	3.82	3.2	0.002	0.49	0.0	0.03	21.99	0.00	2.115	9.69	0.00	4.8	95.2	0.0	-0.83	0.64	0.72	—	3.2	0.004	0.68	0.0	0.04	22.38	0.01	2.147	9.50	2.85	7.9	92.1	0.0	-1.32	1.04	0.65	0.74	—	78761	4891	38	1859	2	0	0	logfile
✔	7SYJ	25530	2024-09-30	2021-11-25	4.8	3.85	4.49	3.7	0.003	0.79	0.0	0.04	21.81	0.01	2.240	5.37	0.02	6.1	93.9	0.0	-2.97	0.71	0.63	—	3.6	0.004	0.72	0.0	0.04	22.06	0.01	1.919	15.34	0.00	8.6	91.4	0.0	-1.73	1.31	0.74	0.69	—	78761	4891	38	1859	2	0	0	logfile
✔	6ZVH	11456	2024-09-30	2020-07-24	2.9	3.10	2.84	2.8	0.008	0.95	1.0	0.05	21.80	0.01	1.992	4.95	0.00	4.9	94.9	0.2	-2.07	0.54	0.88	3.23	2.8	0.005	0.70	0.0	0.04	21.94	0.01	1.867	6.54	1.60	7.9	92.0	0.1	-0.80	1.10	0.54	0.89	2.71	79014	5074	43	1815	33	0	0	logfile
✔	8C94	16501	2024-09-24	2023-01-21	3.8	4.29	4.13	3.8	0.002	0.41	0.0	0.03	22.44	0.00	1.610	7.44	0.00	5.3	94.7	0.0	0.23	0.79	0.79	1.17	3.9	0.005	0.65	0.0	0.03	22.91	0.00	2.010	15.97	3.39	8.9	91.0	0.0	-1.59	1.40	0.81	0.84	1.16	54560	2070	21	1787	0	0	0	logfile
✔	8i7J	35216	2024-09-29	2023-01-31	4.6	4.67	4.57	4.1	0.006	0.99	0.0	0.05	25.02	0.01	1.679	40.27	0.05	19.3	80.4	0.3	-3.88	0.78	0.71	—	4.1	0.005	0.81	0.0	0.04	24.02	0.01	1.679	20.11	0.02	13.7	86.2	0.2	-2.50	1.28	0.81	0.73	—	76299	4874	39	1780	5	0	0	logfile
✔	3JAM	3047	2024-09-29	2015-06-17	3.46	3.54	3.52	3.5	0.007	1.32	63.0	0.10	25.28	0.01	1.398	7.14	13.45	10.2	86.0	3.8	-1.98	0.64	0.83	1.53	3.5	0.003	0.71	0.0	0.04	23.82	0.01	1.880	9.59	5.49	8.9	90.1	1.0	-0.86	0.69	0.67	0.86	1.52	77850	5056	42	1780	83	0	0	logfile
✔	3J80	2764	2024-09-30	2014-08-28	3.75	3.87	3.84	3.8	0.007	1.36	43.0	0.11	26.05	0.01	1.747	9.35	13.53	12.2	83.2	4.6	-2.33	0.79	0.86	0.90	3.7	0.007	0.87	0.0	0.04	24.84	0.01	1.724	19.47	6.10	11.3	87.3	1.4	-1.93	1.59	0.78	0.82	0.84	77716	5039	41	1779	70	0	0	logfile
✘	8iP9	35635	2024-09-29	2023-03-14	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	73028	4393	41	1773	86	0	0	logfile
✔	6RBE	4793	2024-09-28	2019-04-10	3.8	3.91	3.60	2.4	0.007	1.27	0.0	0.06	23.46	0.01	2.076	9.10	1.35	11.9	86.8	1.2	-4.17	0.86	0.80	1.27	2.5	0.006	0.82	0.0	0.04	23.35	0.01	2.043	21.19	2.52	13.0	86.5	0.5	-2.31	1.69	0.85	0.75	0.79	72721	4512	33	1750	0	0	0	logfile
✘	6RBE	4794	2024-09-28	2019-04-10	3.8	4.03	3.73	40.0	0.007	1.27	0.0	0.06	23.46	0.01	2.076	9.10	1.35	11.9	86.8	1.2	-4.17	0.25	0.02	0.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile
✘	6RBE	4795	2024-09-28	2019-04-10	3.8	3.81	4.03	5.1	0.007	1.27	0.0	0.06	23.46	0.01	2.076	9.10	1.35	11.9	86.8	1.2	-4.17	0.38	0.09	0.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile
✘	6Y7C	10713	2024-09-30	2020-02-28	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	79690	5381	34	1735	0	0	0	logfile
✔	8XXL	38752	2024-09-29	2024-01-18	2.9	2.97	2.92	2.9	0.005	0.82	0.0	0.05	21.86	0.01	2.070	5.84	0.58	6.2	93.4	0.4	-2.86	0.85	0.84	3.18	2.9	0.006	0.72	0.0	0.04	22.17	0.01	1.922	7.73	2.60	6.9	92.9	0.2	-0.72	0.38	0.87	0.87	2.79	76240	4975	41	1723	25	0	0	logfile
✔	8XXM	38753	2024-09-29	2024-01-18	3.2	3.17	3.15	3.1	0.005	0.89	0.0	0.05	22.16	0.01	2.081	6.64	0.02	7.2	92.6	0.2	-2.18	0.85	0.83	2.41	3.1	0.003	0.65	0.0	0.04	22.30	0.00	1.973	9.37	2.14	6.8	93.0	0.1	-0.94	0.37	0.88	0.88	1.90	76934	5062	42	1723	26	0	0	logfile
✔	6ZoJ	11320	2024-09-29	2020-07-07	2.8	3.07	—	3.0	0.002	0.51	0.0	0.03	21.18	0.00	1.694	4.40	1.39	2.3	97.7	0.0	0.76	0.80	0.85	3.50	2.9	0.003	0.56	0.0	0.04	21.73	0.00	1.149	4.27	2.19	2.7	97.3	0.0	0.88	2.45	0.81	0.87	3.29	75783	4914	45	1704	169	0	0	logfile
✘	6ZV6	11441	2024-09-29	2020-07-24	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	76226	5048	38	1683	5	3	0	logfile
✔	3J7A	2660	2024-09-28	2014-06-03	3.2	3.24	3.33	3.2	0.008	1.39	49.0	0.10	24.28	0.01	1.715	4.56	15.41	10.5	85.4	4.2	-2.49	0.31	0.55	-0.02	3.2	0.005	0.77	2.0	0.04	22.83	0.01	1.942	14.65	4.57	7.7	91.1	1.1	-1.52	2.47	0.39	0.77	0.98	68866	4106	35	1682	69	0	0	logfile
✔	6EML	3886	2024-09-29	2017-10-02	3.6	3.65	—	3.6	0.014	1.54	11.0	0.10	23.05	0.01	0.382	12.80	1.27	12.5	86.2	1.3	-4.67	0.66	0.77	2.11	3.6	0.003	0.70	0.0	0.04	22.76	0.00	2.096	10.86	2.97	10.3	89.5	0.1	-1.78	1.33	0.67	0.77	1.36	75886	5233	32	1675	0	0	0	logfile
✔	8T4S	41039	2024-09-29	2023-06-09	2.6	2.55	—	1.7	0.005	0.70	0.0	0.05	23.99	0.01	1.654	12.19	3.03	4.5	95.1	0.4	-0.03	0.89	0.87	3.39	1.6	0.007	0.72	1.0	0.05	23.44	0.01	1.792	7.26	2.89	4.4	95.3	0.3	0.11	1.11	0.89	0.87	3.30	74894	4895	42	1671	100	4	0	logfile

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