Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9EZ8	50071	2024-09-28	2024-04-11	2.7	2.74	2.62	2.7	0.003	0.54	0.0	0.05	10.65	0.02	2.160	5.49	3.36	0.0	100.0	0.0	2.00	0.82	0.87	3.78	2.7	0.003	0.49	0.0	0.05	16.16	0.00	2.573	5.77	2.77	1.6	98.4	0.0	0.93	0.55	0.80	0.88	3.62	69480	9420	60	0	0	0	0	logfile
✔	8iAH	35301	2024-09-29	2023-02-08	3.6	3.93	3.79	3.8	0.005	0.89	1.0	0.05	13.94	0.01	2.179	4.74	0.00	3.1	96.9	0.0	0.05	0.80	0.84	1.48	3.8	0.002	0.61	0.0	0.04	15.44	0.00	2.489	6.09	1.04	2.6	97.4	0.1	1.89	1.46	0.80	0.84	1.22	74320	9387	48	0	12	0	0	logfile
✔	6RWB	10037	2024-09-29	2019-06-04	3.25	3.23	—	3.2	0.006	0.99	0.0	0.05	10.24	0.01	2.253	4.65	0.36	9.9	90.1	0.0	-4.08	0.81	0.80	2.59	3.1	0.003	0.63	0.0	0.04	15.42	0.00	2.429	7.28	1.92	8.3	91.7	0.0	0.12	1.29	0.83	0.84	1.96	75405	9365	5	0	0	0	0	logfile
✔	5JXL	8179	2024-09-28	2016-05-13	3.5	3.48	—	3.6	0.008	1.39	0.0	0.06	9.65	0.00	1.795	18.19	0.13	8.7	89.0	2.2	-2.06	0.30	0.77	1.70	3.5	0.003	0.79	0.0	0.05	15.93	0.00	2.195	9.49	4.88	7.2	92.5	0.4	-1.62	1.51	0.30	0.83	1.85	69993	9361	11	0	0	0	0	logfile
✔	8Q1i	18065	2024-09-29	2023-07-31	3.53	3.00	3.50	3.3	0.004	0.72	0.0	0.05	13.44	0.01	1.911	1.03	0.00	0.9	99.1	0.0	-0.84	0.47	0.75	2.86	3.2	0.004	0.62	0.0	0.04	15.93	0.00	2.383	4.68	2.28	2.5	97.5	0.0	-0.09	0.58	0.51	0.78	2.32	73062	9354	24	0	0	0	0	logfile
✔	7U8o	26385	2024-09-28	2022-03-09	3.5	4.15	3.57	2.1	0.009	1.36	29.0	0.08	15.17	0.01	2.204	7.40	5.89	4.5	95.2	0.3	0.53	0.86	0.83	1.60	2.2	0.005	0.75	1.0	0.04	15.14	0.00	2.033	13.79	1.96	4.1	95.8	0.0	1.37	1.40	0.86	0.84	1.29	68632	9348	36	0	0	0	0	logfile
✔	6U23	20616	2024-09-29	2019-08-19	3.49	3.15	2.92	3.1	0.007	0.94	0.0	0.06	10.42	0.01	2.111	2.99	0.39	7.3	92.7	0.0	-4.54	0.79	0.81	2.84	3.1	0.004	0.68	0.0	0.04	13.46	0.00	2.488	4.63	1.57	5.4	94.6	0.0	-1.36	0.61	0.81	0.83	2.18	73472	9328	48	0	64	0	0	logfile
✔	8EMC	28244	2024-09-29	2022-09-27	3.6	4.48	3.74	3.5	0.004	0.73	0.0	0.04	13.02	0.00	1.997	13.13	0.01	4.7	95.0	0.3	0.35	0.87	0.80	1.42	3.5	0.003	0.61	0.0	0.04	14.61	0.00	2.485	10.13	0.77	4.2	95.6	0.2	0.90	1.27	0.91	0.83	1.44	73331	9328	14	0	0	0	0	logfile
✔	6PPH	20436	2024-09-29	2019-07-06	3.8	3.69	3.57	3.7	0.007	1.07	1.0	0.06	10.48	0.01	2.230	4.79	0.49	4.9	95.0	0.2	-4.52	0.48	0.79	2.26	3.6	0.004	0.77	2.0	0.04	15.80	0.00	2.151	8.47	3.15	4.0	95.9	0.0	-1.34	1.33	0.51	0.83	1.92	73502	9326	21	0	0	0	0	logfile
✔	8HRC	34967	2024-09-29	2022-12-15	2.58	2.69	2.60	2.6	0.002	0.48	0.0	0.04	13.75	0.00	2.237	8.80	0.01	1.9	98.1	0.0	1.74	0.79	0.84	2.77	2.6	0.003	0.56	0.0	0.04	16.22	0.00	2.484	7.69	1.73	3.0	97.0	0.0	1.86	1.19	0.81	0.88	2.98	74964	9312	12	0	0	0	0	logfile
✔	8JMW	36428	2024-09-28	2023-06-05	2.9	3.38	2.87	3.1	0.007	0.64	0.0	0.05	15.80	0.01	2.204	9.12	0.00	5.7	94.3	0.0	-0.48	0.74	0.88	3.40	3.1	0.003	0.56	0.0	0.04	16.38	0.00	2.492	7.30	1.28	5.2	94.8	0.0	0.29	0.37	0.74	0.88	3.25	69552	9306	18	0	0	0	0	logfile
✔	7PT6	13619	2024-09-29	2021-09-26	3.2	3.12	—	3.1	0.006	1.06	30.0	0.06	15.10	0.01	1.718	12.07	0.34	3.2	96.8	0.0	-0.49	0.71	0.82	2.72	3.1	0.003	0.57	0.0	0.04	16.47	0.00	1.909	6.65	1.63	3.0	97.0	0.0	0.29	1.51	0.71	0.86	2.65	74358	9282	34	0	52	0	0	logfile
✔	7SFS	25101	2024-09-29	2021-10-04	2.76	3.40	—	3.2	0.007	0.80	0.0	0.05	13.87	0.01	2.029	10.20	0.03	11.0	87.9	1.1	-1.55	0.56	0.86	2.89	3.2	0.003	0.70	0.0	0.04	15.67	0.00	2.407	6.17	1.37	10.0	89.2	0.9	-0.68	0.42	0.55	0.86	2.41	73221	9272	24	0	0	0	0	logfile
✔	7BR7	30158	2024-09-29	2020-03-26	4.3	3.99	—	4.0	0.006	0.94	0.0	0.06	15.20	0.01	1.573	8.92	0.70	6.8	93.2	0.0	-4.57	0.44	0.74	—	3.9	0.003	0.72	0.0	0.04	14.45	0.00	2.347	12.25	0.09	5.3	94.7	0.0	-1.71	0.69	0.47	0.76	—	73138	9263	21	0	0	0	0	logfile
✔	6UWR	20926	2024-09-29	2019-11-05	2.8	2.93	—	2.9	0.007	0.73	0.0	0.05	17.63	0.00	2.020	8.79	11.21	9.9	89.9	0.2	-3.69	0.76	0.87	3.55	2.9	0.005	0.70	0.0	0.05	17.07	0.00	2.117	6.39	3.38	8.3	91.7	0.1	-1.19	1.16	0.76	0.88	3.19	72758	9240	28	0	42	0	0	logfile
✔	7X7M	33041	2024-09-28	2022-03-09	2.33	2.38	2.34	2.3	0.007	0.72	13.0	0.05	17.99	0.01	2.256	4.82	2.56	2.6	97.4	0.0	2.72	0.78	0.86	3.51	2.3	0.005	0.67	42.0	0.05	18.61	0.01	2.543	4.03	4.10	2.6	97.4	0.0	2.32	1.18	0.80	0.88	3.61	70620	9240	60	0	0	0	0	logfile
✔	6UWT	20927	2024-09-29	2019-11-05	3.1	3.24	—	3.2	0.008	0.86	0.0	0.06	17.99	0.00	1.959	17.65	11.86	16.2	83.2	0.7	-4.51	0.69	0.70	1.81	3.2	0.005	0.77	0.0	0.05	17.71	0.00	2.161	10.53	5.84	14.1	85.6	0.3	-2.67	1.59	0.72	0.76	1.92	72744	9240	28	0	28	0	0	logfile
✔	5MPP	3538	2024-09-28	2016-12-17	3.9	4.03	—	4.1	0.009	1.02	0.0	0.06	14.77	0.01	2.456	7.21	5.00	5.3	94.7	0.0	-3.86	0.58	0.49	-0.06	4.0	0.006	0.86	4.0	0.05	17.75	0.01	2.089	13.48	3.43	3.9	96.1	0.0	0.26	3.34	0.82	0.86	0.74	70560	9240	60	0	0	0	0	logfile
✔	7NAP	24277	2024-09-28	2021-06-22	3.2	3.90	—	3.6	0.005	0.74	0.0	0.05	13.06	0.01	2.090	2.71	0.00	1.2	98.7	0.1	1.23	0.86	0.84	2.15	3.6	0.003	0.71	0.0	0.04	15.75	0.00	2.083	9.75	2.08	2.6	97.4	0.0	1.58	0.77	0.86	0.86	1.94	69762	9240	42	0	0	0	0	logfile
✔	8F25	28807	2024-09-28	2022-11-07	2.6	3.22	2.78	2.9	0.007	0.79	0.0	0.05	12.02	0.00	2.123	4.52	0.00	4.0	96.0	0.0	2.44	0.86	0.89	3.57	2.9	0.005	0.61	0.0	0.05	15.51	0.00	2.478	5.40	1.97	3.6	96.4	0.0	1.79	1.57	0.82	0.88	2.76	70560	9240	60	0	0	0	0	logfile

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