Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8WJ1	37575	2024-09-26	2023-09-25	2.27	2.40	2.29	2.5	0.015	1.77	12.0	0.10	18.98	0.03	0.000	10.88	14.10	1.1	98.6	0.4	-1.89	0.56	0.71	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14196	1698	36	0	24	738	0	logfile
✘	8WiX	37571	2024-09-27	2023-09-25	2.29	2.42	2.29	2.4	0.015	1.75	0.0	0.10	18.64	0.02	0.000	8.78	9.17	2.8	96.8	0.4	-1.63	0.58	0.74	3.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14940	1722	36	0	24	702	0	logfile
✘	8J1Z	35939	2024-09-30	2023-04-13	2.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	79520	2835	57	2632	210	664	0	logfile
✘	8D1G	27129	2024-09-27	2022-05-27	2.07	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16201	1735	15	0	61	620	0	logfile
✔	8oiD	16889	2024-09-27	2023-03-22	2.3	2.37	2.20	2.3	0.004	0.61	0.0	0.04	13.01	0.00	1.840	4.07	0.96	3.8	96.2	0.0	-0.64	0.73	0.87	5.49	2.3	0.003	0.62	0.0	0.04	15.98	0.00	1.923	4.56	1.41	1.0	99.0	0.0	2.11	1.08	0.74	0.89	4.91	15206	1850	15	0	10	616	0	logfile
✔	8G6F	29765	2024-09-24	2023-02-15	2.58	2.79	2.70	2.7	0.004	0.51	0.0	0.04	16.10	0.01	2.197	2.66	0.51	1.8	98.2	0.0	1.59	0.82	0.91	4.61	2.8	0.003	0.51	0.0	0.04	16.65	0.00	2.530	4.41	2.18	1.5	98.5	0.0	1.96	0.24	0.81	0.91	4.29	52394	6466	60	0	4	599	0	logfile
✔	7SS5	25404	2024-09-24	2021-11-09	2.7	3.48	2.63	3.2	0.003	0.63	2.0	0.05	19.81	0.00	2.179	8.80	0.00	3.1	96.9	0.0	0.76	0.51	0.75	3.88	3.2	0.003	0.64	0.0	0.04	21.64	0.00	2.072	6.58	1.24	3.7	96.3	0.0	1.78	2.84	0.50	0.87	2.71	6927	676	10	48	6	593	0	logfile
✔	8A2S	15105	2024-09-27	2022-06-06	2.22	2.37	2.18	2.3	0.009	0.68	0.0	0.05	14.10	0.01	1.758	3.33	0.64	1.9	98.1	0.0	-1.13	0.71	0.87	6.45	2.3	0.006	0.72	0.0	0.05	16.82	0.00	1.854	4.19	1.29	1.6	98.4	0.0	1.24	1.05	0.73	0.89	5.97	15141	1835	15	0	15	591	0	logfile
✔	8oi8	16888	2024-09-27	2023-03-22	2.28	2.38	2.21	2.3	0.004	0.58	0.0	0.04	12.07	0.00	1.798	3.42	0.65	1.4	98.6	0.0	-1.50	0.72	0.87	5.56	2.3	0.005	0.68	0.0	0.05	15.09	0.00	1.820	4.16	2.55	0.8	99.2	0.0	1.95	0.84	0.74	0.91	5.53	14895	1815	15	0	10	585	0	logfile
✔	7XY9	33514	2024-09-25	2022-06-01	2.12	2.29	2.22	2.3	0.002	0.54	0.0	0.05	17.43	0.00	1.988	4.59	1.67	4.0	96.0	0.0	0.43	0.78	0.88	5.01	2.3	0.004	0.66	0.0	0.05	17.35	0.00	1.884	4.02	2.23	4.4	95.6	0.0	-0.18	0.85	0.75	0.87	5.40	10962	1376	12	0	12	574	0	logfile
✔	8A2Z	15109	2024-09-27	2022-06-06	2.15	2.27	2.11	2.2	0.004	0.58	0.0	0.04	11.91	0.00	2.190	1.81	0.00	2.1	97.7	0.3	-1.13	0.74	0.87	6.56	2.2	0.003	0.62	0.0	0.04	15.75	0.00	2.189	3.65	0.90	1.7	98.3	0.0	1.70	1.46	0.74	0.89	5.84	15060	1830	15	0	10	570	0	logfile
✔	8A2T	15106	2024-09-27	2022-06-06	2.24	2.35	2.17	2.3	0.004	0.56	0.0	0.04	13.20	0.00	1.880	2.50	0.32	1.9	98.1	0.0	-1.62	0.71	0.87	5.89	2.3	0.006	0.72	0.0	0.05	16.47	0.00	1.845	3.41	1.35	1.3	98.7	0.0	1.27	0.82	0.74	0.90	5.47	15046	1830	15	0	10	556	0	logfile
✔	7N06	24101	2024-09-27	2021-05-25	2.2	2.34	—	2.2	0.007	0.63	0.0	0.05	14.75	0.00	2.096	3.28	2.10	2.5	97.4	0.1	-1.80	0.83	0.88	7.00	2.2	0.003	0.52	0.0	0.05	16.65	0.00	2.484	2.74	0.49	1.4	98.6	0.0	0.45	1.11	0.84	0.89	6.16	17223	2082	21	18	0	555	0	logfile
✔	7oE0	12856	2024-09-24	2021-04-30	2.69	2.88	2.81	2.8	0.014	1.07	0.0	0.06	24.11	0.01	1.980	24.23	0.00	10.1	89.9	0.0	-2.59	0.77	0.72	2.51	2.8	0.005	0.69	0.0	0.04	23.70	0.00	1.996	12.58	2.20	8.4	91.6	0.0	-1.30	0.41	0.76	0.70	1.82	50296	2208	29	1510	0	530	0	logfile
✔	8A2Y	15108	2024-09-27	2022-06-06	2.15	2.21	2.10	2.2	0.005	0.61	0.0	0.05	13.42	0.00	2.177	2.39	0.64	1.9	98.1	0.0	-1.01	0.72	0.87	6.39	2.2	0.004	0.70	0.0	0.05	16.28	0.00	2.112	3.78	0.64	1.1	98.9	0.0	1.14	0.83	0.72	0.89	6.11	15078	1835	15	0	15	528	0	logfile
✔	8PNV	17786	2024-09-26	2023-07-02	2.048	1.96	2.05	2.0	0.004	0.66	0.0	0.04	17.46	0.01	2.040	3.74	2.87	1.1	98.9	0.0	2.57	0.79	0.86	5.51	2.0	0.004	0.64	0.0	0.04	16.29	0.00	2.491	3.10	2.63	1.5	98.5	0.0	2.14	1.01	0.79	0.87	5.49	13098	1626	30	0	6	522	0	logfile
✔	8A2U	15107	2024-09-27	2022-06-06	2.21	2.31	2.16	2.3	0.004	0.63	0.0	0.04	13.27	0.00	2.173	2.75	0.65	2.5	97.5	0.0	-1.41	0.72	0.86	6.31	2.3	0.002	0.62	0.0	0.04	16.46	0.00	2.097	3.34	0.45	1.0	99.0	0.0	1.54	1.07	0.73	0.88	5.76	15022	1830	15	0	15	512	0	logfile
✔	7PCH	13320	2024-09-25	2021-08-03	2.89	3.82	2.93	3.4	0.012	1.54	0.0	0.10	13.62	0.01	2.343	0.97	0.55	3.7	96.3	0.0	1.22	0.89	0.83	3.70	3.4	0.003	0.66	0.0	0.04	14.32	0.00	2.465	4.18	0.64	1.0	99.0	0.0	2.50	0.90	0.92	0.91	3.74	10798	1254	16	0	4	510	0	logfile
✔	8oQ7	17107	2024-09-27	2023-04-11	2.2	2.13	2.08	2.2	0.007	0.87	0.0	0.09	10.81	0.01	2.290	1.40	0.33	1.5	98.5	0.0	2.27	0.73	0.85	5.65	2.1	0.005	0.74	0.0	0.05	14.30	0.01	2.604	1.40	1.79	2.0	98.0	0.0	1.73	1.01	0.73	0.87	5.84	14702	1680	15	0	57	505	0	logfile
✘	8BC3	15961	2024-09-27	2022-10-14	2.1	2.00	2.14	2.2	0.014	1.93	0.0	0.10	18.17	0.02	2.310	1.34	11.95	3.3	96.7	0.0	-4.28	0.71	0.84	5.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16880	2170	30	0	10	500	0	logfile

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