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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8F7C | 28902 | 2024-09-27 | 2022-11-18 | 3.92 | 4.16 | 3.93 | 4.2 | 0.002 | 0.52 | 0.0 | 0.04 | 13.95 | 0.00 | 1.675 | 4.95 | 0.00 | 3.2 | 96.8 | 0.0 | 0.02 | 0.64 | 0.82 | 2.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15925 | 2009 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 8D85 | 27247 | 2024-09-24 | 2022-06-07 | 3.81 | 4.26 | 4.04 | 4.2 | 0.003 | 0.53 | 0.0 | 0.04 | 19.55 | 0.00 | 2.357 | 4.77 | 0.00 | 4.1 | 95.8 | 0.1 | -2.45 | 0.68 | 0.64 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7093 | 865 | 10 | 0 | 11 | 0 | 0 | logfile |
✘ | 7RBU | 24402 | 2024-09-23 | 2021-07-06 | 3.7 | 2.38 | — | 2.2 | 0.006 | 0.80 | 0.0 | 0.05 | 12.81 | 0.00 | 2.167 | 6.95 | 0.00 | 9.1 | 90.7 | 0.2 | -2.50 | 0.74 | 0.77 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4107 | 510 | 6 | 0 | 7 | 0 | 0 | logfile |
✘ | 8DYY | 27786 | 2024-09-27 | 2022-08-05 | 3.62 | 3.95 | 3.54 | 3.9 | 0.011 | 0.96 | 1.0 | 0.04 | 14.40 | 0.00 | 2.085 | 10.02 | 0.33 | 5.9 | 94.1 | 0.0 | -0.11 | 0.77 | 0.86 | 2.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16499 | 2133 | 19 | 0 | 0 | 0 | 0 | logfile |
✘ | 6G90 | 4364 | 2024-09-27 | 2018-04-10 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65050 | 6796 | 48 | 474 | 223 | 0 | 0 | logfile |
✘ | 8EMR | 28262 | 2024-09-24 | 2022-09-28 | 2.92 | 3.25 | 2.98 | 3.2 | 0.003 | 0.62 | 0.0 | 0.05 | 14.91 | 0.00 | 2.263 | 5.06 | 0.12 | 4.4 | 95.6 | 0.0 | -0.58 | 0.74 | 0.79 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7685 | 952 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 7Q3L | 13793 | 2024-09-29 | 2021-10-28 | 2.21 | 2.93 | 2.31 | 2.6 | 0.008 | 1.50 | 26.0 | 0.12 | 15.89 | 0.01 | 1.876 | 2.99 | 2.50 | 3.2 | 96.8 | 0.0 | -1.25 | 0.81 | 0.86 | 3.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20470 | 2440 | 16 | 41 | 4 | 180 | 0 | logfile |
✘ | 6PCH | 20300 | 2024-09-28 | 2019-06-17 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72134 | 964 | 8 | 3015 | 1 | 0 | 0 | logfile |
✘ | 6RE5 | 4842 | 2024-09-25 | 2019-04-12 | 3.2 | 3.28 | — | 3.3 | 0.010 | 0.94 | 0.0 | 0.06 | 14.50 | 0.01 | 2.163 | 5.75 | 0.27 | 4.8 | 95.0 | 0.2 | -3.94 | 0.72 | 0.85 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53720 | 7099 | 37 | 0 | 11 | 0 | 0 | logfile |
✘ | 6PCT | 20307 | 2024-09-28 | 2019-06-18 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72198 | 964 | 8 | 3015 | 1 | 0 | 0 | logfile |
✘ | 8EJJ | 28184 | 2024-09-27 | 2022-09-16 | 3.22 | 3.73 | 3.20 | 3.6 | 0.024 | 1.80 | 0.0 | 0.15 | 13.95 | 0.01 | 2.394 | 1.97 | 0.00 | 2.8 | 97.2 | 0.0 | 0.28 | 0.83 | 0.84 | 3.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14862 | 1743 | 46 | 0 | 87 | 0 | 0 | logfile |
✘ | 7QTQ | 14145 | 2024-09-25 | 2022-01-15 | 3.3 | 3.53 | — | 3.4 | 0.008 | 0.83 | 4.0 | 0.06 | 15.29 | 0.01 | 2.045 | 9.61 | 0.20 | 10.6 | 89.4 | 0.0 | -2.27 | 0.72 | 0.82 | 2.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 54960 | 3577 | 10 | 0 | 24 | 0 | 26827 | logfile |
✘ | 8JHY | 36300 | 2024-09-25 | 2023-05-25 | 2.87 | 2.15 | — | 2.8 | 0.007 | 0.96 | 0.0 | 0.05 | 13.90 | 0.01 | 2.078 | 10.20 | 0.00 | 5.7 | 94.3 | 0.0 | -2.25 | 0.75 | 0.77 | 3.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9073 | 1144 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 6PCQ | 20304 | 2024-09-28 | 2019-06-18 | 2.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72125 | 963 | 8 | 3015 | 1 | 0 | 0 | logfile |
✘ | 7YLV | 33918 | 2024-09-27 | 2022-07-27 | 3.91 | 4.23 | 4.38 | 4.3 | 0.009 | 0.68 | 0.0 | 0.06 | 10.36 | 0.00 | 2.239 | 1.53 | 0.03 | 2.3 | 97.6 | 0.2 | -0.18 | 0.55 | 0.40 | 0.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65495 | 8564 | 17 | 0 | 0 | 0 | 0 | logfile |
✘ | 8SXA | 40829 | 2024-09-28 | 2023-05-20 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18596 | 1153 | 1 | 0 | 0 | 0 | 9418 | logfile |
✘ | 7Yi4 | 33851 | 2024-09-30 | 2022-07-14 | 3.96 | 8.09 | 3.85 | 2.7 | 0.004 | 0.61 | 0.0 | 0.04 | 23.49 | 0.00 | 2.041 | 12.68 | 0.10 | 3.9 | 96.1 | 0.0 | 1.12 | 0.85 | 0.82 | 0.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25351 | 2359 | 18 | 302 | 5 | 0 | 0 | logfile |
✘ | 8HMZ | 34905 | 2024-09-26 | 2022-12-06 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11542 | 1367 | 9 | 82 | 6 | 0 | 0 | logfile |
✘ | 7UoP | 26652 | 2024-09-27 | 2022-04-13 | 2.8 | 3.24 | 2.81 | 3.1 | 0.004 | 0.59 | 0.0 | 0.05 | 12.28 | 0.00 | 2.126 | 2.36 | 1.02 | 2.4 | 97.6 | 0.0 | 0.45 | 0.81 | 0.83 | 3.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15702 | 2010 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 8J6i | 36005 | 2024-09-24 | 2023-04-26 | 2.92 | 2.81 | 2.83 | 3.0 | 0.006 | 0.63 | 0.0 | 0.04 | 16.60 | 0.01 | 2.167 | 8.17 | 0.00 | 3.7 | 96.2 | 0.1 | 1.37 | 0.53 | 0.71 | 2.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8801 | 1131 | 6 | 0 | 1 | 0 | 0 | logfile |