Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7YQ4	34019	2024-09-25	2022-08-05	3.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10618	1243	5	24	0	0	0	logfile
✔	7DNL	30787	2024-09-29	2020-12-09	4.19	4.89	—	4.7	0.005	1.03	0.0	0.06	14.88	0.01	1.747	6.63	0.57	7.3	92.6	0.1	-4.29	0.38	0.78	—	4.7	0.003	0.72	0.0	0.05	13.60	0.01	2.429	10.81	0.00	7.0	93.0	0.0	-2.48	1.32	0.38	0.78	—	21847	2769	7	0	0	0	0	logfile
✔	7NG4	12307	2024-09-29	2021-02-08	4.4	5.07	4.36	3.9	0.010	1.37	0.0	0.06	13.48	0.01	1.977	6.38	0.12	7.3	92.7	0.0	-2.19	0.89	0.78	—	3.8	0.003	0.60	0.0	0.04	13.09	0.00	1.833	8.71	0.00	5.2	94.8	0.0	-0.70	0.97	0.89	0.80	—	74624	4656	13	0	31	0	37485	logfile
✘	8DGJ	27427	2024-09-26	2022-06-23	4.02	4.32	4.05	4.1	0.007	1.24	2.0	0.06	14.25	0.01	2.213	11.07	0.13	7.4	92.3	0.3	-2.71	0.69	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13574	1689	2	0	0	0	0	logfile
✔	8F7E	28904	2024-09-24	2022-11-18	4.13	4.21	4.35	4.1	0.005	0.98	0.0	0.05	15.17	0.01	2.266	14.09	0.53	7.4	92.6	0.0	-3.38	0.55	0.57	—	4.1	0.004	0.86	0.0	0.05	14.31	0.01	2.391	19.45	0.00	7.3	92.7	0.0	-2.56	2.07	0.58	0.62	—	6642	814	2	0	0	0	0	logfile
✔	8F7J	28905	2024-09-23	2022-11-18	4.32	4.45	4.63	8.9	0.005	0.92	0.0	0.05	15.44	0.01	2.282	15.12	0.26	5.7	94.3	0.0	-3.18	0.38	0.32	—	4.3	0.005	0.92	0.0	0.05	14.34	0.01	2.486	27.01	0.00	11.1	88.9	0.0	-3.32	2.96	0.45	0.47	—	3321	407	1	0	0	0	0	logfile
✘	7NAF	24271	2024-09-28	2021-06-21	3.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18868	1342	18	378	0	2	0	logfile
✔	8DRo	27679	2024-09-24	2022-07-21	4.06	4.13	4.38	4.1	0.004	0.96	0.0	0.05	15.27	0.01	2.265	14.83	0.40	7.3	92.7	0.0	-3.39	0.46	0.53	—	4.1	0.003	0.79	0.0	0.04	14.04	0.01	2.532	18.64	0.00	8.8	91.2	0.0	-2.60	2.64	0.46	0.53	—	6642	814	2	0	0	0	0	logfile
✘	7ZAG	14579	2024-09-27	2022-03-22	2.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65678	3824	58	1596	68	379	0	logfile
✔	5MQ0	3541	2024-09-30	2016-12-19	4.17	4.40	—	4.2	0.010	1.54	21.0	0.11	17.52	0.01	0.679	7.92	2.73	7.7	91.4	0.9	-2.01	0.68	0.56	—	4.1	0.004	0.73	0.0	0.04	17.00	0.00	1.880	15.41	0.00	5.7	94.3	0.1	0.03	2.10	0.74	0.74	—	77441	9673	53	448	99	0	0	logfile
✔	6HD5	0201	2024-09-25	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.79	0.0	0.04	11.83	0.00	2.476	16.34	0.00	5.6	94.2	0.2	-0.50	2.01	0.45	0.56	—	9707	1234	3	0	0	0	0	logfile
✘	7U5T	26358	2024-09-27	2022-03-02	3.43	3.65	3.40	3.5	0.008	1.09	0.0	0.07	13.05	0.01	2.280	7.60	0.10	6.4	93.6	0.0	-5.95	0.59	0.62	1.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9093	1190	2	0	0	0	0	logfile
✔	7T3A	25652	2024-09-29	2021-12-07	4.0	4.44	—	4.2	0.006	1.20	1.0	0.07	15.61	0.01	2.234	7.29	0.04	9.3	90.7	0.0	-3.22	0.81	0.81	—	4.2	0.003	0.77	0.0	0.05	17.02	0.00	2.428	12.77	2.08	7.6	92.4	0.0	-1.14	0.48	0.81	0.80	—	23310	2897	11	0	1	0	0	logfile
✘	6VL6	21231	2024-09-29	2020-01-22	4.6	5.00	4.54	4.6	0.019	1.46	0.0	0.09	11.38	0.01	2.431	0.59	0.00	0.9	99.1	0.0	0.45	0.87	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21504	2640	24	0	0	0	0	logfile
✔	7N9Q	24259	2024-09-24	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.5	0.003	1.00	0.0	0.00	5.05	0.00	2.580	6.76	0.00	12.3	86.7	0.9	-4.51	2.40	0.85	0.81	—	6945	2315	1	0	0	0	0	logfile
✔	8F75	28895	2024-09-25	2022-11-18	4.0	4.26	4.21	4.1	0.004	0.80	0.0	0.05	15.36	0.01	2.258	12.37	0.62	5.6	94.4	0.0	-2.96	0.70	0.68	—	4.0	0.003	0.82	0.0	0.05	17.25	0.01	2.522	17.75	2.99	5.7	94.3	0.0	-2.65	2.62	0.71	0.71	—	9899	1218	3	0	0	0	0	logfile
✔	7CN9	30419	2024-09-30	2020-07-30	4.7	4.78	—	4.7	0.011	1.19	0.0	0.07	16.72	0.01	1.927	47.47	2.39	21.4	77.5	1.1	-5.89	0.53	0.74	—	4.7	0.003	0.82	0.0	0.05	13.37	0.01	2.329	15.07	0.00	10.1	89.8	0.1	-2.91	1.37	0.51	0.71	—	24052	3058	19	0	56	0	0	logfile
✔	7UDU	26460	2024-09-27	2022-03-20	4.15	4.18	4.07	4.1	0.004	0.67	0.0	0.05	14.26	0.00	2.186	10.92	0.06	6.0	94.0	0.0	-0.29	0.55	0.65	—	4.1	0.003	0.72	0.0	0.04	14.41	0.00	1.954	11.02	0.18	5.1	94.9	0.0	0.07	1.74	0.64	0.79	—	15711	1966	9	0	8	0	0	logfile
✔	8HAN	34597	2024-09-27	2022-10-26	4.2	4.31	4.16	3.4	0.003	0.54	0.0	0.03	24.99	0.00	2.219	8.41	0.00	1.1	98.9	0.0	2.88	0.83	0.72	—	2.9	0.003	0.62	0.0	0.04	26.62	0.00	2.465	11.70	0.00	2.4	97.6	0.0	2.15	0.81	0.86	0.79	—	16180	1261	11	294	0	0	0	logfile
✔	7JLX	22383	2024-09-23	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.005	0.94	0.0	0.05	8.03	0.01	2.232	3.80	0.00	17.7	81.1	1.2	-3.30	2.46	0.48	0.54	—	3288	664	4	0	0	0	0	logfile

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