Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8C91	16498	2024-09-26	2023-01-21	4.19	4.74	4.70	4.2	0.001	0.36	0.0	0.03	22.46	0.00	1.896	5.51	0.07	3.8	96.1	0.2	0.39	0.84	0.79	—	4.2	0.005	0.68	0.0	0.04	23.84	0.01	1.984	23.33	0.00	9.2	90.7	0.1	-1.82	0.91	0.86	0.85	—	59110	1860	18	2077	0	0	0	logfile
✔	7SQV	25396	2024-09-23	2021-11-06	2.3	2.95	2.29	2.8	0.001	0.38	0.0	0.04	16.08	0.00	2.314	1.47	0.63	0.7	99.3	0.0	1.86	0.76	0.88	3.59	2.8	0.003	0.46	0.0	0.04	16.27	0.00	2.607	0.79	1.46	1.1	98.9	0.0	1.77	1.99	0.77	0.90	3.57	4471	573	5	0	0	7	0	logfile
✔	7JSE	22451	2024-09-26	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.50	—	4.0	0.004	0.95	0.0	0.07	14.02	0.00	2.539	1.70	0.00	14.0	86.0	0.0	-1.86	2.74	0.88	0.61	—	13288	3168	24	32	0	0	0	logfile
✔	6HD5	0201	2024-09-25	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.79	0.0	0.04	11.83	0.00	2.476	16.34	0.00	5.6	94.2	0.2	-0.50	2.01	0.45	0.56	—	9707	1234	3	0	0	0	0	logfile
✔	7JLX	22383	2024-09-23	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.005	0.94	0.0	0.05	8.03	0.01	2.232	3.80	0.00	17.7	81.1	1.2	-3.30	2.46	0.48	0.54	—	3288	664	4	0	0	0	0	logfile
✔	8FEJ	29029	2024-09-25	2022-12-06	4.64	5.33	4.68	4.6	0.001	0.37	0.0	0.04	13.97	0.00	2.030	6.27	4.30	2.9	96.9	0.2	0.48	0.88	0.69	—	4.6	0.002	0.56	0.0	0.04	12.58	0.00	2.425	7.92	0.00	6.2	93.6	0.2	-0.58	1.70	0.91	0.74	—	10464	1368	3	0	0	0	0	logfile
✔	7VF9	31948	2024-09-30	2021-09-10	4.04	4.13	—	4.1	0.001	0.38	0.0	0.04	9.65	0.00	2.176	3.71	0.05	1.5	98.5	0.0	-4.44	0.74	0.74	—	4.1	0.007	0.82	0.0	0.05	12.45	0.01	1.956	8.23	0.09	6.5	93.5	0.0	-1.41	2.38	0.78	0.79	—	24247	3425	7	0	3	0	0	logfile
✔	7XL4	33272	2024-09-30	2022-04-21	3.86	3.92	—	3.8	0.001	0.36	0.0	0.04	9.42	0.00	2.274	4.13	0.00	1.4	98.6	0.0	-4.82	0.78	0.75	1.26	3.8	0.003	0.63	0.0	0.04	13.98	0.00	2.232	6.49	2.77	3.6	96.4	0.0	-1.03	1.32	0.80	0.80	1.23	24560	3479	8	0	3	0	0	logfile
✔	7R9U	24331	2024-09-24	2021-06-29	4.4	5.41	—	4.3	0.002	0.34	0.0	0.04	4.36	0.00	2.248	3.50	0.00	9.1	90.3	0.6	-4.49	0.78	0.62	—	4.3	0.003	0.57	0.0	0.04	9.23	0.00	2.353	6.86	0.00	4.6	95.4	0.0	0.33	2.39	0.91	0.84	—	7727	505	1	0	0	0	3939	logfile
✔	6PM5	20388	2024-09-26	2019-07-01	3.1	3.38	—	3.4	0.002	0.49	0.0	0.06	11.10	0.00	2.032	4.99	0.00	2.4	97.6	0.0	-4.42	0.52	0.78	3.48	3.4	0.006	0.86	0.0	0.05	13.77	0.01	2.169	6.93	2.64	3.5	96.5	0.0	-0.26	1.36	0.57	0.85	3.97	13975	1735	15	0	15	0	0	logfile
✔	7VXi	32180	2024-09-30	2021-11-12	3.4	2.35	—	2.0	0.002	0.49	0.0	0.04	7.29	0.00	2.125	3.01	0.00	4.3	95.5	0.1	-1.83	0.65	0.60	1.83	2.1	0.003	0.64	0.0	0.04	13.82	0.00	2.269	8.50	2.26	3.6	96.2	0.2	-0.01	1.42	0.73	0.71	2.54	24570	3144	3	0	0	0	0	logfile
✔	6LXD	30005	2024-09-26	2020-02-10	3.9	3.67	—	3.5	0.002	0.55	0.0	0.04	16.82	0.00	2.239	15.36	0.70	9.3	90.7	0.0	-3.27	0.87	0.79	0.87	3.5	0.003	0.78	0.0	0.04	18.04	0.00	2.388	14.64	2.09	9.4	90.6	0.0	-1.70	0.69	0.88	0.80	0.79	9435	963	5	72	2	0	0	logfile
✔	7S3i	24825	2024-09-24	2021-09-07	2.51	2.95	2.29	2.8	0.002	0.44	0.0	0.04	13.63	0.00	2.088	5.73	0.00	2.1	97.9	0.0	1.36	0.80	0.87	3.90	2.8	0.003	0.55	0.0	0.04	16.22	0.00	2.522	4.11	1.50	2.0	98.0	0.0	1.59	0.93	0.77	0.88	3.76	8094	1023	5	0	0	0	0	logfile
✔	6UVA	20906	2024-09-25	2019-11-01	2.3	2.12	2.31	2.2	0.002	0.55	0.0	0.04	18.04	0.00	2.207	6.66	3.36	3.2	96.8	0.0	-2.29	0.63	0.72	2.83	2.3	0.003	0.64	0.0	0.04	18.45	0.00	2.508	7.34	3.17	4.2	95.8	0.0	0.04	1.29	0.65	0.79	2.87	9561	1199	7	0	0	0	0	logfile
✔	7EoU	31231	2024-09-30	2021-04-22	4.3	4.50	—	4.2	0.002	0.45	0.0	0.04	9.12	0.00	2.243	9.16	1.92	3.9	96.0	0.1	0.78	0.86	0.73	—	4.2	0.002	0.64	0.0	0.04	11.36	0.00	2.419	11.23	0.00	5.5	94.5	0.1	-0.23	1.64	0.89	0.79	—	24593	3084	8	0	19	0	0	logfile
✔	7Uo1	26637	2024-09-27	2022-04-12	3.2	3.31	—	3.3	0.002	4.43	0.0	0.10	31.57	0.00	1.799	11.73	0.00	4.5	92.7	2.7	0.03	0.51	0.54	2.38	3.2	0.004	1.86	0.0	0.24	31.18	0.01	2.029	15.50	4.08	5.5	94.5	0.0	-0.22	1.81	0.57	0.65	1.50	16588	112	4	455	10	0	5894	logfile
✔	7EoS	31229	2024-09-30	2021-04-22	3.9	4.43	—	3.9	0.002	0.42	0.0	0.04	9.75	0.00	2.254	6.49	1.89	4.1	95.8	0.1	0.47	0.88	0.78	1.32	4.0	0.005	0.76	0.0	0.05	12.51	0.00	2.436	13.68	2.39	7.3	92.6	0.1	-0.62	2.51	0.91	0.84	1.30	24600	3106	8	0	18	0	0	logfile
✔	7WWV	32874	2024-09-29	2022-02-14	3.2	3.31	—	3.3	0.002	0.57	0.0	0.04	16.78	0.00	2.204	6.39	0.00	8.4	91.3	0.2	-0.65	0.74	0.80	2.46	3.3	0.003	0.60	0.0	0.04	18.41	0.00	2.436	5.30	2.66	9.6	90.2	0.2	-0.73	1.45	0.75	0.83	2.58	19622	2233	11	117	0	0	0	logfile
✔	7DR6	30824	2024-09-26	2020-12-26	4.1	4.22	—	4.2	0.002	0.55	0.0	0.04	7.81	0.00	2.196	10.05	0.12	4.9	94.9	0.1	-2.74	0.68	0.63	—	4.2	0.004	0.79	0.0	0.05	13.44	0.00	2.344	14.78	0.06	3.8	96.2	0.0	-0.15	1.85	0.74	0.73	—	59957	7661	35	0	0	0	0	logfile
✔	7R8C	24315	2024-09-24	2021-06-26	3.7	4.19	—	4.1	0.002	0.49	0.0	0.04	12.82	0.00	2.073	6.73	0.21	4.8	95.2	0.0	-1.63	0.68	0.85	1.76	4.1	0.003	0.67	0.0	0.04	15.21	0.00	2.610	7.42	2.36	5.5	94.5	0.0	1.18	0.55	0.71	0.87	1.82	8538	1090	2	0	0	0	0	logfile

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