Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y1L	33565	2024-09-25	2022-06-08	3.73	3.98	3.74	3.9	0.005	0.59	0.0	0.04	12.44	0.00	2.202	8.44	1.03	1.8	98.2	0.0	2.57	0.64	0.85	1.27	3.9	0.003	0.61	0.0	0.04	14.70	0.00	2.018	8.44	2.17	1.3	98.7	0.0	2.67	0.46	0.64	0.85	0.93	8955	1189	2	0	5	0	0	logfile
✔	8T6U	41081	2024-09-25	2023-06-18	3.13	3.96	3.17	3.7	0.011	1.49	0.0	0.18	15.19	0.01	2.246	4.28	0.33	2.6	97.2	0.2	-3.15	0.67	0.86	2.94	3.7	0.003	0.61	0.0	0.04	14.57	0.00	2.448	7.15	1.45	2.1	97.9	0.0	2.07	1.20	0.64	0.84	2.72	8638	1032	8	0	16	36	0	logfile
✔	8DVF	27737	2024-09-29	2022-07-28	3.3	2.89	3.38	3.2	0.004	0.68	0.0	0.05	12.51	0.00	1.862	10.34	1.78	4.9	95.1	0.0	0.22	0.64	0.75	2.04	2.9	0.003	0.62	0.0	0.04	16.86	0.00	1.947	9.20	1.82	4.8	95.2	0.0	0.16	0.83	0.67	0.79	1.86	23693	2914	14	17	10	0	0	logfile
✔	8GA0	29883	2024-09-24	2023-02-22	3.5	3.76	3.70	3.7	0.004	0.84	0.0	0.05	14.18	0.01	2.274	4.15	0.00	4.8	95.2	0.0	-6.86	0.65	0.78	1.71	3.7	0.003	0.66	0.0	0.04	15.84	0.00	2.529	7.19	2.72	3.3	96.7	0.0	-2.00	0.48	0.62	0.76	1.21	6598	882	2	0	0	0	0	logfile
✔	8DE4	27384	2024-09-24	2022-06-19	2.9	3.20	2.90	3.3	0.009	0.79	0.0	0.23	18.02	0.01	2.096	10.13	4.35	3.0	97.0	0.0	0.28	0.50	0.66	1.62	3.3	0.003	0.56	0.0	0.04	16.37	0.00	2.363	9.97	5.12	5.3	94.7	0.0	-0.16	0.88	0.53	0.69	1.83	6188	767	5	0	9	0	0	logfile
✔	8GA8	29892	2024-09-29	2023-02-22	3.5	3.70	3.49	3.7	0.003	0.54	0.0	0.04	17.43	0.00	2.028	11.33	0.33	2.6	97.4	0.0	0.98	0.70	0.69	0.56	3.7	0.002	0.55	0.0	0.04	17.91	0.00	2.023	8.13	3.58	2.2	97.8	0.0	1.18	1.68	0.70	0.69	0.42	22011	2675	12	0	2	0	0	logfile
✔	8K1T	36803	2024-09-29	2023-07-11	2.48	2.75	2.59	2.7	0.004	0.53	0.0	0.04	10.97	0.00	2.240	3.11	0.97	2.2	97.8	0.0	0.84	0.69	0.84	3.15	2.7	0.003	0.59	0.0	0.04	16.67	0.00	2.314	7.41	2.57	1.9	98.1	0.0	1.90	1.81	0.67	0.86	2.58	23866	3052	24	0	16	0	0	logfile
✔	7YDP	33755	2024-09-24	2022-07-04	3.1	2.36	3.18	2.1	0.005	0.73	0.0	0.05	12.57	0.00	2.123	11.85	0.00	5.2	94.8	0.0	-1.21	0.68	0.65	1.63	2.1	0.004	0.71	0.0	0.04	15.04	0.01	2.510	8.78	2.20	5.0	95.0	0.0	-0.20	0.38	0.69	0.66	1.20	8028	1022	5	0	0	0	0	logfile
✔	8GY2	34368	2024-09-25	2022-09-21	2.5	3.19	2.59	3.0	0.007	0.67	0.0	0.04	17.18	0.00	1.759	7.33	2.88	6.8	93.2	0.0	-0.26	0.80	0.89	4.02	3.0	0.003	0.63	0.0	0.04	16.99	0.00	2.212	4.80	1.89	5.8	94.2	0.0	-0.02	0.25	0.80	0.89	4.12	9943	1264	5	0	7	0	0	logfile
✔	6QJQ	4566	2024-09-23	2019-01-24	3.7	3.99	2.14	4.1	0.021	1.17	0.0	0.11	13.36	0.01	2.499	5.58	0.00	4.0	94.0	2.0	-4.41	0.39	0.75	2.60	4.1	0.004	0.80	0.0	0.05	14.34	0.00	2.639	9.17	1.39	6.7	93.3	0.0	-3.19	2.13	0.37	0.75	2.33	1218	162	6	0	0	0	0	logfile
✔	8SZZ	40926	2024-09-23	2023-05-30	2.9	3.06	2.89	3.0	0.005	0.71	0.0	0.05	14.17	0.01	2.197	3.30	0.43	1.5	98.5	0.0	-1.08	0.72	0.85	3.42	3.0	0.003	0.52	0.0	0.04	17.37	0.00	2.305	3.90	1.15	1.7	98.3	0.0	2.36	0.48	0.74	0.87	3.00	48815	6504	72	0	24	0	0	logfile
✔	8iPS	35642	2024-09-25	2023-03-14	3.6	3.89	3.62	3.8	0.005	0.70	0.0	0.04	18.31	0.01	2.221	8.07	0.21	7.6	92.4	0.0	0.29	0.75	0.82	1.33	3.8	0.003	0.62	0.0	0.04	18.92	0.00	2.568	5.34	3.61	6.7	93.2	0.2	0.92	1.04	0.73	0.82	1.31	9071	1161	3	0	1	0	0	logfile
✔	8TWE	41667	2024-09-26	2023-08-21	2.55	3.04	2.52	2.9	0.003	0.48	0.0	0.04	10.13	0.00	1.425	1.05	0.13	0.5	99.5	0.0	1.05	0.76	0.87	5.13	2.9	0.002	0.51	0.0	0.04	13.36	0.00	2.398	1.88	0.27	1.5	98.5	0.0	1.13	0.82	0.76	0.89	4.56	13319	833	4	0	0	0	6636	logfile
✔	8io9	35612	2024-09-29	2023-03-10	2.36	3.18	2.44	2.8	0.005	0.60	0.0	0.04	12.28	0.00	1.987	8.65	0.48	3.5	96.5	0.0	0.34	0.86	0.84	4.54	2.8	0.002	0.51	0.0	0.04	12.70	0.00	2.023	6.17	0.61	3.5	96.5	0.0	1.01	0.30	0.86	0.84	3.69	75744	9456	24	0	36	0	0	logfile
✔	7Y1N	33567	2024-09-25	2022-06-08	3.61	3.87	3.57	3.8	0.005	0.70	0.0	0.04	12.08	0.00	2.118	8.54	1.30	2.2	97.8	0.0	2.40	0.67	0.85	2.14	3.8	0.003	0.62	0.0	0.04	14.52	0.00	1.946	6.46	2.83	1.0	99.0	0.0	2.81	0.48	0.67	0.84	1.53	8763	1171	2	0	5	0	0	logfile
✔	8iFG	35416	2024-09-28	2023-02-17	3.2	3.71	3.30	3.7	0.006	0.75	0.0	0.05	16.27	0.01	2.044	13.39	5.26	8.4	91.5	0.2	-2.83	0.64	0.74	2.38	3.7	0.003	0.66	0.0	0.04	17.05	0.01	2.006	7.77	2.35	6.0	93.9	0.0	0.09	0.63	0.58	0.72	2.06	19068	2338	10	0	3	1	0	logfile
✔	8J46	35971	2024-09-23	2023-04-19	3.66	4.32	3.59	4.1	0.004	0.77	0.0	0.05	9.52	0.01	2.463	0.54	0.00	0.9	99.1	0.0	2.69	0.47	0.72	2.69	4.1	0.003	0.59	0.0	0.04	11.16	0.00	2.480	4.05	3.85	2.3	97.7	0.0	3.39	1.08	0.49	0.77	2.07	2158	362	1	0	0	0	0	logfile
✔	8ESV	28580	2024-09-24	2022-10-14	3.3	2.37	3.29	2.0	0.006	0.71	0.0	0.04	19.21	0.01	1.929	12.92	0.00	6.7	93.1	0.2	-0.67	0.76	0.76	2.53	1.9	0.005	0.73	0.0	0.05	17.68	0.00	1.911	11.22	4.55	7.7	92.1	0.2	-0.78	0.29	0.77	0.77	2.24	7222	933	8	0	13	0	0	logfile
✔	7V4D	31708	2024-09-23	2021-08-12	3.5	3.38	—	4.0	0.003	0.54	0.0	0.05	11.89	0.00	2.234	14.44	0.00	7.1	92.9	0.0	-5.68	0.41	0.80	4.67	4.1	0.002	0.67	0.0	0.05	12.63	0.00	2.563	4.95	5.00	7.7	92.3	0.0	-3.66	1.16	0.42	0.80	4.18	2376	348	6	0	0	0	0	logfile
✔	8FD6	29003	2024-09-29	2022-12-02	2.9	3.18	2.95	3.2	0.007	0.74	0.0	0.05	14.43	0.00	1.835	8.75	0.16	3.8	96.2	0.0	0.39	0.64	0.73	2.61	3.2	0.003	0.59	0.0	0.04	16.63	0.00	1.898	6.43	1.60	3.4	96.6	0.0	1.23	1.23	0.70	0.77	2.32	22170	2747	2	0	6	0	0	logfile

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