Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7X34	32978	2024-09-23	2022-02-27	3.1	5.47	3.73	3.1	0.009	1.17	0.0	0.05	24.84	0.01	2.316	5.71	0.00	3.1	96.9	0.0	-2.86	0.21	0.78	1.18	3.3	0.005	0.81	0.0	0.04	25.40	0.00	2.071	30.52	2.60	4.1	95.9	0.0	-0.30	0.66	0.21	0.78	-0.93	2762	100	2	94	0	0	0	logfile
✔	9EoE	19852	2024-09-23	2024-03-14	2.3	2.15	2.26	2.2	0.009	1.54	2.0	0.10	14.88	0.01	2.621	4.14	4.41	8.0	92.0	0.0	-3.08	0.21	0.80	6.35	2.2	0.004	0.72	0.0	0.05	16.64	0.01	2.632	2.51	2.94	5.3	94.7	0.0	-1.85	1.25	0.27	0.83	7.06	595	77	1	0	0	0	0	logfile
✔	3JBS	6478	2024-09-23	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.003	0.64	0.0	0.04	18.35	0.00	2.655	5.51	3.95	1.7	98.3	0.0	0.93	1.82	0.21	0.81	3.78	1401	175	1	0	0	0	0	logfile
✔	8Q8C	18250	2024-09-24	2023-08-18	1.92	1.98	1.90	2.0	0.011	1.66	0.0	0.08	10.69	0.01	2.505	0.00	0.27	1.2	98.8	0.0	-1.44	0.21	0.65	7.52	1.9	0.002	0.52	0.0	0.05	15.47	0.00	2.540	0.60	0.54	1.7	98.3	0.0	-0.98	1.22	0.39	0.89	7.72	6618	429	6	0	0	0	3372	logfile
✔	8UoY	42441	2024-09-26	2023-10-20	3.4	3.52	3.51	3.4	0.016	2.25	10.0	0.11	17.12	0.02	2.532	0.83	6.89	12.1	85.3	2.6	-3.89	0.21	0.24	0.07	3.4	0.003	0.74	0.0	0.04	17.61	0.00	2.251	11.83	6.01	10.6	89.2	0.2	-3.21	0.86	0.22	0.25	0.30	13188	872	2	0	0	0	6544	logfile
✔	7FG3	31577	2024-09-25	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.29	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.005	1.11	0.0	0.05	16.69	0.01	2.298	18.78	2.69	13.2	86.3	0.5	-3.44	0.77	0.22	0.43	0.35	9054	1166	2	0	0	0	0	logfile
✘	6RJU	4906	2024-09-23	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1992	131	1	0	0	0	997	logfile
✔	7W6P	32331	2024-09-24	2021-12-02	3.47	3.79	—	9.6	0.004	0.69	0.0	0.04	13.68	0.00	2.196	14.60	0.11	7.0	93.0	0.0	-0.94	0.22	0.11	0.18	8.5	0.004	0.79	0.0	0.05	15.92	0.00	2.503	16.77	2.44	6.3	93.7	0.0	-0.85	1.95	0.33	0.28	0.86	8408	1083	6	0	1	0	0	logfile
✔	3JC2	3245	2024-09-23	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	18.51	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.004	0.91	0.0	0.05	17.36	0.01	2.543	13.06	2.68	7.2	92.1	0.6	-1.72	2.35	0.24	0.54	1.76	3911	482	4	0	32	0	0	logfile
✔	8Q98	18271	2024-09-24	2023-08-20	1.75	1.75	1.77	1.8	0.011	1.66	0.0	0.07	9.83	0.01	2.543	0.00	0.00	0.5	99.5	0.0	-0.80	0.22	0.65	8.64	1.8	0.002	0.51	0.0	0.05	13.42	0.00	2.608	1.42	0.51	1.1	98.9	0.0	-0.45	0.90	0.43	0.90	8.04	7032	450	6	0	0	0	3588	logfile
✔	7Q3U	13795	2024-09-23	2021-10-28	3.7	3.43	3.48	4.1	0.005	1.17	0.0	0.05	16.84	0.01	2.120	36.48	0.00	10.7	89.3	0.0	-5.79	0.23	0.47	0.88	4.0	0.004	0.89	0.0	0.04	18.73	0.00	2.527	16.46	2.38	10.7	89.3	0.0	-5.99	2.23	0.33	0.60	3.26	2355	355	5	0	0	0	0	logfile
✘	7KU5	23034	2024-09-23	2020-11-24	3.76	3.63	—	3.9	0.006	1.29	0.0	0.07	14.85	0.01	2.420	3.63	0.00	12.8	87.2	0.0	-5.41	0.23	0.65	-0.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	750	88	2	0	4	0	0	logfile
✔	7BC5	12139	2024-09-23	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	3.0	0.003	0.70	0.0	0.04	16.90	0.00	2.565	11.94	3.05	8.2	91.8	0.0	-2.99	1.28	0.23	0.58	1.60	1200	161	1	0	0	0	0	logfile
✔	8UPT	42455	2024-09-23	2023-10-23	2.8	3.38	2.84	2.9	0.016	2.20	0.0	0.16	30.45	0.01	1.072	99.56	0.00	0.0	0.0	0.0	—	0.23	0.59	—	2.9	0.006	0.73	0.0	0.04	27.67	0.01	2.090	18.78	0.00	0.0	0.0	0.0	—	0.98	0.28	0.88	—	1518	0	1	71	0	0	0	logfile
✔	8TiF	41286	2024-09-23	2023-07-19	3.89	3.95	3.71	4.1	0.005	0.55	0.0	0.04	17.04	0.00	2.317	8.78	1.02	1.6	98.4	0.0	0.15	0.23	0.85	1.30	4.1	0.003	0.53	0.0	0.04	16.99	0.00	2.624	3.29	6.12	0.8	99.2	0.0	0.55	0.32	0.22	0.85	3.19	889	131	1	0	0	0	0	logfile
✔	5Li4	4052	2024-09-28	2016-07-14	4.2	5.13	—	4.0	0.053	3.07	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.4	0.004	1.02	0.0	0.05	14.11	0.01	2.275	24.65	0.00	15.2	83.7	1.1	-3.90	4.20	0.34	0.58	—	20070	2562	6	0	0	0	0	logfile
✔	5FN1	3236	2024-09-26	2015-11-10	3.9	4.00	—	4.7	0.009	1.18	0.0	0.07	12.98	0.00	0.877	53.81	0.00	8.8	88.4	2.8	-3.37	0.24	0.29	0.57	3.9	0.006	1.10	4.0	0.04	17.40	0.01	1.887	17.86	2.20	9.8	89.3	0.9	-0.97	2.04	0.40	0.73	1.02	61308	3906	36	90	0	0	30078	logfile
✘	6RBE	4794	2024-09-28	2019-04-10	3.8	4.03	3.73	40.0	0.007	1.27	0.0	0.06	23.46	0.01	2.076	9.10	1.35	11.9	86.8	1.2	-4.17	0.25	0.02	0.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile
✔	8oLG	16957	2024-09-23	2023-03-30	4.2	3.16	3.54	4.2	0.002	0.41	0.0	0.05	9.55	0.00	2.261	9.57	0.00	13.5	86.5	0.0	-4.82	0.25	0.63	—	4.2	0.006	0.92	0.0	0.05	15.70	0.00	2.530	19.49	0.00	17.8	82.2	0.0	-4.69	1.60	0.30	0.66	—	1490	195	5	0	0	0	0	logfile
✔	8Q9G	18280	2024-09-24	2023-08-20	2.65	1.99	2.52	2.2	0.011	1.95	0.0	0.09	10.25	0.01	2.554	0.00	0.00	1.6	98.4	0.0	-1.98	0.25	0.66	6.26	2.2	0.004	0.63	0.0	0.05	16.57	0.00	2.484	2.05	1.30	2.1	97.9	0.0	-2.20	1.19	0.34	0.84	6.63	6822	438	6	0	0	0	3480	logfile

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