Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CVi	27008	2024-09-27	2022-05-18	3.4	3.54	3.20	3.4	0.003	0.49	0.0	0.03	13.53	0.00	2.073	8.79	0.05	4.0	95.9	0.1	1.49	0.55	0.83	1.22	3.4	0.004	0.74	3.0	0.04	16.52	0.00	2.152	8.87	2.09	4.1	95.9	0.0	3.44	2.21	0.58	0.85	0.91	66030	8856	33	0	0	0	0	logfile
✔	8G88	29843	2024-09-26	2023-02-17	4.8	7.18	4.63	3.2	0.004	0.60	0.0	0.03	27.72	0.00	2.275	7.12	0.93	1.0	99.0	0.0	1.45	0.78	0.60	—	3.2	0.004	0.66	0.0	0.04	28.88	0.00	2.084	17.73	0.00	2.3	97.7	0.0	1.40	1.98	0.91	0.80	—	13995	891	11	336	0	0	0	logfile
✔	6T9L	10415	2024-09-28	2019-10-28	3.6	3.74	3.53	3.6	0.002	0.47	0.0	0.03	22.57	0.00	2.136	7.11	0.07	1.1	98.9	0.0	-1.63	0.74	0.68	0.82	3.6	0.003	0.62	0.0	0.04	24.77	0.00	2.030	7.29	2.98	2.3	97.7	0.0	0.98	0.81	0.84	0.84	1.12	18157	1532	18	290	8	0	0	logfile
✔	7oN1	12993	2024-09-25	2021-05-25	3.35	3.18	—	3.4	0.002	0.47	0.0	0.03	26.14	0.00	2.120	6.38	0.00	1.5	98.5	0.0	-0.25	0.82	0.83	1.11	3.4	0.005	0.60	0.0	0.04	27.24	0.00	2.109	4.65	1.88	2.9	97.1	0.0	2.39	1.33	0.84	0.90	1.68	11150	777	12	246	0	0	0	logfile
✔	7QEW	13943	2024-09-25	2021-12-03	2.1	2.62	—	2.2	0.005	0.86	0.0	0.03	11.15	0.00	2.191	3.73	2.18	3.3	96.7	0.0	1.32	0.78	0.89	4.62	2.3	0.003	0.69	0.0	0.04	14.49	0.00	2.556	5.30	1.59	3.1	96.9	0.0	3.03	1.06	0.79	0.92	3.36	9702	1128	18	0	30	234	0	logfile
✔	5LY6	4118	2024-09-23	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.005	0.87	0.0	0.04	13.99	0.01	2.505	17.30	0.00	11.3	88.5	0.2	-2.96	3.31	0.40	0.77	—	3725	471	1	0	0	0	0	logfile
✔	6WQQ	21873	2024-09-30	2020-04-29	3.1	2.53	3.04	3.0	0.002	0.45	2.0	0.03	22.73	0.00	2.203	3.54	0.36	3.9	96.1	0.0	-4.07	0.73	0.80	2.74	3.0	0.004	0.71	0.0	0.04	23.32	0.01	1.968	4.74	5.33	6.5	93.5	0.0	-2.80	0.32	0.74	0.82	2.54	81134	2671	28	2809	1	0	0	logfile
✔	7EZ0	31385	2024-09-24	2021-06-01	3.14	3.26	—	3.2	0.003	0.56	0.0	0.03	23.64	0.00	1.804	2.25	0.00	0.0	0.0	0.0	—	0.74	0.79	—	3.2	0.004	0.61	0.0	0.03	23.75	0.00	1.904	6.34	0.00	0.0	0.0	0.0	—	2.04	0.77	0.86	—	8306	0	2	387	27	0	0	logfile
✔	7PiM	13442	2024-09-26	2021-08-20	4.6	5.02	5.18	4.6	0.002	0.41	0.0	0.03	8.31	0.00	1.900	45.64	0.67	2.0	98.0	0.0	2.23	0.81	0.76	—	6.0	0.002	0.52	0.0	0.04	11.97	0.00	2.029	59.38	0.00	2.5	97.5	0.0	0.50	1.51	0.82	0.76	—	11844	1412	12	0	8	0	524	logfile
✔	7QEY	13944	2024-09-25	2021-12-03	2.0	2.46	—	2.2	0.005	0.85	0.0	0.03	10.53	0.00	2.199	3.57	2.35	1.7	98.3	0.0	1.74	0.77	0.90	5.27	2.2	0.003	0.68	0.0	0.04	13.40	0.00	2.548	3.51	2.04	2.1	97.9	0.0	3.40	0.99	0.78	0.92	3.80	9467	1092	18	0	30	281	0	logfile
✔	7Q2Z	13786	2024-09-24	2021-10-26	3.2	2.91	3.15	3.2	0.002	0.48	0.0	0.03	18.98	0.00	2.227	4.26	0.00	6.5	93.4	0.1	-1.44	0.67	0.80	2.05	3.2	0.004	0.59	0.0	0.04	19.99	0.00	2.557	2.78	1.46	3.3	96.6	0.1	1.62	1.22	0.71	0.86	2.46	8258	902	4	46	0	0	0	logfile
✔	8EXA	28656	2024-09-23	2022-10-25	3.14	3.45	3.09	3.4	0.004	0.54	0.0	0.03	22.74	0.00	2.223	15.79	0.40	3.6	96.4	0.0	0.27	0.61	0.69	4.07	3.4	0.003	0.49	0.0	0.03	22.58	0.00	2.495	12.36	2.83	3.3	96.7	0.0	0.89	1.14	0.60	0.68	3.79	5539	341	4	139	0	0	0	logfile
✔	7RZS	24776	2024-09-23	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.003	0.41	0.0	0.03	16.11	0.00	2.489	3.44	1.42	0.0	100.0	0.0	5.54	0.87	0.79	0.82	1.14	2445	324	6	0	0	0	0	logfile
✔	6XMG	22258	2024-09-24	2020-06-30	4.8	8.26	—	3.9	0.002	0.53	0.0	0.03	21.64	0.00	2.187	10.77	0.00	6.7	93.3	0.0	-2.01	0.90	0.74	—	3.4	0.004	0.74	0.0	0.04	22.79	0.01	2.016	31.79	0.20	10.2	89.8	0.0	-2.00	0.73	0.90	0.77	—	8361	638	4	154	1	0	0	logfile
✔	7RZT	24777	2024-09-23	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.1	0.003	0.32	0.0	0.03	15.49	0.00	2.612	5.44	0.00	0.0	100.0	0.0	6.18	0.22	0.80	0.83	2.98	2451	324	6	0	0	0	0	logfile
✔	7RZQ	24774	2024-09-23	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.002	0.29	0.0	0.03	14.97	0.00	2.630	4.28	1.07	0.0	100.0	0.0	6.40	0.29	0.81	0.82	1.34	2421	322	6	0	0	0	0	logfile
✔	6WCC	21606	2024-09-26	2020-03-30	3.24	3.27	—	3.3	0.003	0.51	0.0	0.03	15.73	0.00	2.025	4.39	2.26	0.8	99.2	0.0	1.46	0.53	0.76	1.58	3.3	0.004	0.54	0.0	0.03	16.00	0.00	2.495	5.16	1.61	2.5	97.5	0.0	4.00	1.30	0.52	0.79	1.98	11629	734	6	0	5	12	5908	logfile
✔	7RZV	24779	2024-09-23	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.35	0.0	0.03	15.93	0.00	2.430	3.69	1.01	0.0	100.0	0.0	5.97	0.88	0.83	0.83	1.79	2562	339	6	0	0	0	0	logfile
✔	8D9L	27265	2024-09-23	2022-06-10	4.04	5.24	4.18	4.5	0.002	0.44	0.0	0.03	16.63	0.00	2.250	7.25	0.43	1.8	98.2	0.0	1.09	0.89	0.80	—	4.4	0.005	0.64	0.0	0.04	17.49	0.00	2.164	15.24	0.00	3.3	96.7	0.0	0.50	0.65	0.90	0.84	—	5757	553	4	65	1	0	0	logfile
✔	7TAN	25777	2024-09-26	2021-12-21	3.0	2.95	—	3.1	0.003	0.47	0.0	0.03	27.16	0.00	2.287	3.25	0.00	2.8	97.2	0.0	2.18	0.82	0.85	2.22	3.1	0.004	0.52	0.0	0.03	27.71	0.00	2.417	2.33	1.56	2.1	97.9	0.0	2.24	0.33	0.84	0.87	1.93	12119	768	12	294	0	0	0	logfile

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