Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XBW	38231	2024-09-23	2023-12-07	2.89	5.59	1.82	5.3	0.006	1.06	0.0	0.05	23.74	0.01	1.155	13.10	0.00	0.8	99.2	0.0	-0.65	0.76	0.71	-0.50	5.3	0.005	1.27	0.0	0.06	23.55	0.00	2.473	27.75	2.48	3.4	96.6	0.0	-2.17	2.02	0.81	0.81	0.77	2671	242	5	36	0	0	0	logfile
✔	8HF7	34715	2024-09-24	2022-11-09	3.8	4.66	1.82	4.2	0.006	1.34	2.0	0.07	14.02	0.01	2.294	7.91	0.61	5.9	93.5	0.6	-3.03	0.63	0.74	0.62	4.3	0.003	0.81	0.0	0.04	16.20	0.00	2.455	13.30	2.63	6.1	93.7	0.2	0.23	0.58	0.64	0.77	0.49	8978	1126	4	0	26	0	0	logfile
✔	7QK5	14038	2024-09-25	2021-12-17	1.92	1.67	1.83	2.2	0.011	1.89	4.0	0.10	10.96	0.01	2.401	0.10	0.00	4.5	95.5	0.0	-1.58	0.32	0.78	6.85	2.2	0.003	0.60	0.0	0.05	18.13	0.00	2.571	2.20	3.59	4.2	95.8	0.0	-1.89	1.63	0.36	0.82	7.01	10485	666	18	0	36	0	5337	logfile
✔	7oZH	13124	2024-09-23	2021-06-28	3.02	3.20	1.84	3.3	0.024	1.40	0.0	0.09	7.44	0.01	2.546	14.72	0.00	5.4	94.6	0.0	-2.78	0.33	0.60	4.68	3.2	0.004	0.72	0.0	0.05	15.26	0.00	2.556	15.60	7.18	10.0	90.0	0.0	-2.38	1.45	0.40	0.69	0.33	3890	580	10	0	0	0	0	logfile
✔	6Y1A	10669	2024-09-23	2020-02-11	4.2	3.60	1.84	4.3	0.005	1.09	0.0	0.07	9.42	0.00	2.509	15.01	0.00	4.3	95.7	0.0	-4.99	0.53	0.63	—	4.2	0.006	0.81	0.0	0.04	11.00	0.00	2.023	17.13	0.60	7.6	92.4	0.0	-4.28	1.49	0.56	0.75	—	2960	400	32	0	16	0	0	logfile
✔	6S61	10101	2024-09-28	2019-07-02	1.84	1.89	1.85	1.9	0.011	1.36	0.0	0.06	12.21	0.01	0.312	2.62	1.29	1.8	98.2	0.0	3.69	0.77	0.86	8.46	1.9	0.004	0.62	0.0	0.04	14.89	0.00	2.160	2.50	0.65	1.3	98.7	0.0	4.32	0.78	0.80	0.90	8.67	71060	4128	72	0	30	3854	32904	logfile
✔	7Xo1	33333	2024-09-23	2022-04-30	3.0	2.71	1.85	3.1	0.002	0.53	0.0	0.05	16.42	0.00	2.269	6.86	0.00	5.0	95.0	0.0	-2.46	0.45	0.86	4.75	3.1	0.005	0.65	0.0	0.05	18.36	0.00	2.614	2.86	1.55	6.7	93.3	0.0	-2.12	0.33	0.45	0.87	5.76	2550	372	6	0	0	0	0	logfile
✔	7Xo0	33332	2024-09-23	2022-04-30	3.0	2.48	1.85	3.1	0.001	0.39	0.0	0.05	16.62	0.00	2.280	4.76	0.00	5.0	95.0	0.0	-2.66	0.47	0.87	7.11	3.1	0.003	0.45	0.0	0.05	17.20	0.00	2.581	3.43	2.71	6.9	93.1	0.0	-2.65	0.30	0.46	0.87	6.85	2550	372	6	0	0	0	0	logfile
✔	8oZL	17313	2024-09-24	2023-05-09	3.4	3.28	1.87	3.4	0.012	1.52	0.0	0.10	10.88	0.00	2.574	1.49	0.00	1.2	98.8	0.0	2.33	0.37	0.73	3.42	3.4	0.003	0.50	0.0	0.04	13.80	0.00	2.599	1.49	0.97	0.6	99.4	0.0	2.57	0.43	0.54	0.87	1.92	6675	870	5	0	0	0	0	logfile
✔	8VoV	43392	2024-09-26	2024-01-16	3.6	3.53	1.87	3.7	0.012	0.88	0.0	0.04	18.13	0.00	1.985	4.60	0.07	4.2	95.8	0.0	1.83	0.68	0.84	1.09	3.7	0.003	0.57	0.0	0.04	17.71	0.00	2.482	2.77	1.57	3.2	96.8	0.0	1.98	0.39	0.68	0.84	1.11	13998	1734	12	0	12	0	0	logfile
✔	7QJW	14024	2024-09-24	2021-12-17	2.81	2.81	1.88	2.9	0.012	2.09	0.0	0.10	11.96	0.01	2.556	0.00	0.00	2.3	96.3	1.4	-1.19	0.34	0.72	5.41	2.8	0.002	0.58	0.0	0.05	15.08	0.00	2.535	1.57	0.51	3.2	96.8	0.0	-1.43	1.47	0.38	0.77	5.07	7032	450	6	0	0	0	3588	logfile
✔	8Q9F	18279	2024-09-24	2023-08-20	1.91	1.89	1.88	1.9	0.011	1.78	0.0	0.09	10.30	0.01	2.515	0.00	0.00	0.2	99.8	0.0	-2.15	0.31	0.73	7.64	1.9	0.003	0.63	0.0	0.05	14.58	0.00	2.484	2.35	0.56	2.5	97.5	0.0	-2.15	1.18	0.43	0.85	7.32	6390	414	6	0	0	0	3258	logfile
✔	7QV5	14167	2024-09-23	2022-01-19	3.0	3.03	1.88	3.0	0.010	0.44	0.0	0.06	9.44	0.00	2.689	1.08	0.00	6.2	93.8	0.0	-2.64	0.46	0.86	7.89	3.1	0.002	0.37	0.0	0.06	12.18	0.00	2.260	0.36	0.00	0.7	99.3	0.0	-2.06	0.88	0.50	0.89	6.33	5562	342	45	0	18	0	2997	logfile
✔	7P6A	13223	2024-09-23	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.006	0.74	0.0	0.06	14.08	0.00	2.571	4.76	0.64	4.7	95.3	0.0	-2.53	0.83	0.54	0.90	7.92	4166	540	10	0	0	76	0	logfile
✔	8oRM	17129	2024-09-23	2023-04-14	1.9	1.83	1.88	1.9	0.004	0.58	0.0	0.04	16.75	0.00	2.236	3.99	0.90	1.6	98.2	0.2	1.88	0.70	0.81	5.96	1.9	0.003	0.61	0.0	0.04	16.69	0.01	2.606	4.68	1.62	1.1	98.7	0.2	1.66	0.21	0.70	0.82	5.77	5341	632	7	0	2	210	0	logfile
✔	7QEQ	13937	2024-09-28	2021-12-03	1.9	2.38	1.89	2.1	0.005	0.87	0.0	0.04	12.39	0.00	2.181	2.19	1.18	1.1	98.9	0.0	1.60	0.82	0.90	4.56	2.1	0.003	0.61	0.0	0.04	14.23	0.00	2.555	3.49	1.04	2.3	97.7	0.0	4.22	1.00	0.82	0.92	4.08	19313	2268	36	0	60	305	0	logfile
✘	8BQV	16188	2024-09-24	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.13	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✔	8oVM	17223	2024-09-23	2023-04-26	3.24	3.35	1.89	3.4	0.007	0.99	0.0	0.09	11.00	0.00	2.447	9.68	0.00	2.9	97.1	0.0	-3.60	0.43	0.78	4.59	3.4	0.003	0.75	0.0	0.05	14.25	0.00	2.611	7.82	5.71	6.5	93.5	0.0	-3.33	1.51	0.45	0.80	3.88	1360	180	5	0	0	0	0	logfile
✔	8oWD	17234	2024-09-23	2023-04-27	3.28	3.36	1.89	3.4	0.012	2.44	0.0	0.12	21.08	0.00	2.506	5.03	16.13	0.0	100.0	0.0	-0.81	0.49	0.81	4.66	3.4	0.006	0.77	0.0	0.05	17.46	0.00	2.567	12.73	7.74	2.1	97.9	0.0	-3.48	0.71	0.46	0.79	6.23	1525	200	5	0	0	0	0	logfile
✔	8WCC	37438	2024-09-23	2023-09-11	3.04	2.88	1.90	3.2	0.017	2.05	5.0	0.15	16.41	0.02	2.464	8.33	2.87	9.2	90.8	0.0	-3.38	0.84	0.81	2.50	3.2	0.004	0.72	0.0	0.04	16.42	0.00	2.609	6.12	3.83	2.7	97.3	0.0	1.27	1.14	0.81	0.78	2.17	2056	270	2	0	1	0	0	logfile

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