Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XZi	38797	2024-09-24	2024-01-21	2.7	1.98	—	1.7	0.021	1.72	2.0	0.09	9.40	0.01	1.226	1.67	0.20	2.2	97.6	0.2	1.22	0.73	0.82	4.38	1.6	0.003	0.65	0.0	0.04	14.94	0.00	2.484	6.25	1.73	3.4	96.6	0.0	1.16	1.09	0.75	0.85	3.24	9041	1149	6	0	1	0	0	logfile
✔	8GAV	29909	2024-09-28	2023-02-23	2.7	2.16	2.58	1.7	0.011	1.05	0.0	0.07	9.78	0.01	2.021	2.60	0.38	5.7	94.1	0.2	-3.07	0.81	0.82	5.61	1.6	0.004	0.71	0.0	0.05	14.14	0.00	2.528	3.16	2.65	4.7	95.3	0.0	-0.92	1.20	0.82	0.84	4.81	19088	2464	16	0	12	0	0	logfile
✘	8RAS	19023	2024-09-25	2023-12-01	2.62	2.31	—	1.7	0.003	0.51	0.0	0.04	17.48	0.00	1.980	7.95	0.93	3.1	96.9	0.1	0.61	0.78	0.80	3.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57315	6830	45	81	4	254	0	logfile
✔	7P13	13154	2024-09-26	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	2.1	0.002	0.44	0.0	0.03	17.09	0.00	2.472	15.03	1.44	2.3	97.7	0.0	5.41	0.51	0.83	0.87	3.25	13727	1743	7	0	0	0	154	logfile
✔	8FHK	29087	2024-09-28	2022-12-14	2.9	2.20	—	1.7	0.008	1.17	1.0	0.06	18.88	0.02	2.200	7.55	0.39	7.0	93.0	0.0	-1.60	0.73	0.68	1.79	1.7	0.003	0.63	0.0	0.04	18.05	0.01	1.801	10.59	1.64	7.9	92.1	0.0	-0.70	1.31	0.75	0.73	1.87	19947	1219	4	0	20	0	9827	logfile
✔	8D33	27154	2024-09-27	2022-05-31	2.46	2.01	2.48	1.7	0.003	0.55	0.0	0.04	13.19	0.00	2.091	4.01	0.39	3.5	96.5	0.1	0.90	0.73	0.78	3.10	1.6	0.003	0.64	0.0	0.04	18.15	0.00	2.312	6.35	3.04	3.2	96.8	0.0	1.11	1.33	0.73	0.79	2.84	15272	1784	6	46	2	0	0	logfile
✔	8SZF	40914	2024-09-26	2023-05-29	2.8	2.08	—	1.7	0.005	0.70	1.0	0.05	13.19	0.01	2.268	4.64	0.00	3.1	96.9	0.0	0.03	0.79	0.83	3.52	1.7	0.002	0.52	0.0	0.04	15.00	0.00	2.311	2.93	0.96	2.8	97.2	0.0	0.70	0.34	0.79	0.83	2.60	12813	1602	9	0	20	0	0	logfile
✔	7S8L	24896	2024-09-24	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.45	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	2.0	0.003	0.62	0.0	0.04	15.41	0.00	2.389	2.13	1.94	3.2	96.8	0.0	1.28	0.33	0.84	0.84	3.82	8177	1096	6	0	0	0	0	logfile
✔	8JRN	36599	2024-09-26	2023-06-17	2.6	2.12	2.69	1.7	0.004	0.51	0.0	0.04	17.31	0.00	1.840	9.52	0.26	1.7	98.3	0.0	0.37	0.80	0.80	2.85	1.7	0.003	0.57	0.0	0.04	18.06	0.00	2.489	6.83	2.09	1.6	98.4	0.0	1.27	0.50	0.80	0.81	2.95	13672	1660	6	0	4	0	0	logfile
✔	8UDL	42150	2024-09-27	2023-09-28	2.37	1.99	2.45	1.7	0.003	0.74	0.0	0.05	15.49	0.01	2.257	2.17	0.39	3.8	96.1	0.1	-0.77	0.66	0.76	3.31	1.7	0.005	0.83	0.0	0.05	19.10	0.01	2.259	6.42	3.29	4.5	95.5	0.0	-0.04	2.69	0.67	0.78	2.46	15245	1783	5	46	0	0	0	logfile
✔	8XSF	38618	2024-09-27	2024-01-09	2.16	2.17	2.18	1.8	0.003	0.59	0.0	0.04	12.92	0.01	2.140	6.66	0.19	3.5	96.4	0.1	0.99	0.73	0.69	2.89	1.9	0.004	0.69	1.0	0.05	15.91	0.01	2.010	6.40	2.54	3.3	96.6	0.1	0.51	1.09	0.79	0.77	2.79	9736	1221	6	0	5	0	0	logfile
✔	8EZQ	28748	2024-09-28	2022-11-01	3.7	2.65	—	1.8	0.003	0.61	0.0	0.04	11.91	0.00	2.048	17.77	0.42	9.6	90.4	0.0	0.31	0.74	0.75	1.10	1.8	0.004	0.81	0.0	0.04	15.80	0.00	2.372	13.82	3.51	9.5	90.4	0.2	-0.14	0.95	0.75	0.75	0.93	20456	2545	2	0	0	0	0	logfile
✔	7VD9	31911	2024-09-27	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	7.80	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.003	0.57	0.0	0.04	17.40	0.00	2.480	6.15	1.34	3.4	96.6	0.0	0.42	0.29	0.58	0.73	3.74	16426	1991	8	0	8	0	0	logfile
✔	7V9L	31824	2024-09-24	2021-08-26	2.6	2.13	—	1.8	0.004	0.69	0.0	0.05	13.08	0.01	2.120	3.88	0.00	3.8	96.2	0.0	0.00	0.67	0.70	3.73	1.9	0.003	0.61	0.0	0.04	15.66	0.00	2.509	8.32	1.26	1.8	98.2	0.0	0.92	0.47	0.77	0.79	2.74	8047	1019	5	0	0	0	0	logfile
✔	8P2S	17373	2024-09-25	2023-05-16	2.4	2.06	2.43	1.8	0.003	0.54	0.0	0.04	12.82	0.00	2.120	8.76	3.01	4.7	95.2	0.1	0.29	0.79	0.75	4.06	1.8	0.004	0.68	0.0	0.05	16.47	0.00	1.996	10.22	1.65	6.0	93.9	0.1	0.26	0.54	0.80	0.79	3.74	9694	1201	4	0	6	0	0	logfile
✘	9AVG	43901	2024-09-27	2024-03-02	3.6	2.11	—	1.8	0.005	0.69	0.0	0.04	12.94	0.01	2.112	8.93	0.00	3.2	96.8	0.0	-0.83	0.76	0.75	2.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17498	2210	13	0	25	0	0	logfile
✔	7C7S	30301	2024-09-25	2020-05-26	2.9	2.38	—	1.8	0.006	0.78	0.0	0.05	13.96	0.01	2.153	7.86	0.00	3.7	96.3	0.0	-2.62	0.83	0.80	2.82	1.8	0.004	0.73	0.0	0.05	15.10	0.00	2.416	7.13	2.37	3.5	96.5	0.0	0.31	0.59	0.85	0.83	2.62	10915	1355	4	0	9	0	0	logfile
✔	7M3G	23654	2024-09-26	2021-03-18	2.5	2.29	—	1.8	0.007	0.96	0.0	0.06	17.28	0.01	2.281	2.21	0.93	3.0	97.0	0.0	-2.02	0.84	0.85	3.70	1.8	0.003	0.60	0.0	0.04	17.04	0.00	2.302	3.13	2.72	3.7	96.3	0.0	0.14	0.34	0.85	0.87	3.49	13298	1627	11	0	41	0	0	logfile
✔	7A5V	11657	2024-09-29	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.59	0.0	0.09	14.87	0.02	0.000	2.35	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	1.8	0.003	0.63	0.0	0.05	13.97	0.00	0.000	4.30	0.52	0.5	99.5	0.0	1.92	0.34	0.71	0.86	6.10	21155	2275	30	0	85	1015	0	logfile
✔	8SZH	40916	2024-09-28	2023-05-29	3.1	2.21	—	1.8	0.006	0.78	2.0	0.11	14.62	0.01	2.196	4.04	0.00	3.8	96.2	0.0	-0.33	0.82	0.82	2.95	1.8	0.003	0.53	0.0	0.04	15.75	0.00	2.452	2.75	1.66	3.7	96.3	0.0	0.03	0.35	0.83	0.84	2.47	18062	2267	10	0	24	1	0	logfile

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