Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8J7R	36046	2024-09-23	2023-04-28	3.7	3.03	3.63	3.4	0.010	1.34	0.0	0.13	24.43	0.00	2.220	9.29	6.85	2.5	97.5	0.0	-0.13	0.69	0.76	0.98	3.0	0.004	0.64	0.0	0.03	22.89	0.00	2.503	9.43	3.65	2.5	97.5	0.0	2.23	1.37	0.72	0.80	1.43	4034	238	3	97	3	1	0	logfile
✔	8ViF	43260	2024-09-23	2024-01-04	3.1	3.32	3.03	3.3	0.004	0.61	0.0	0.04	13.83	0.01	2.184	5.82	0.00	3.1	96.9	0.0	0.05	0.70	0.84	3.63	3.3	0.003	0.56	0.0	0.04	14.87	0.00	2.541	5.98	1.90	3.1	96.9	0.0	-0.34	0.99	0.69	0.85	3.34	3326	427	4	0	1	0	0	logfile
✔	8XCV	38256	2024-09-23	2023-12-10	2.83	3.05	—	3.0	0.007	0.80	0.0	0.05	16.46	0.01	2.441	4.86	2.95	1.5	98.5	0.0	1.22	0.48	0.89	4.82	3.0	0.002	0.49	0.0	0.04	15.89	0.00	2.544	5.62	0.59	2.2	97.8	0.0	1.78	0.85	0.48	0.91	4.40	3310	415	2	0	1	7	0	logfile
✔	8oKR	16930	2024-09-23	2023-03-29	2.86	3.36	2.66	3.4	0.007	1.56	0.0	0.09	22.91	0.01	1.489	4.96	0.00	0.0	100.0	0.0	-4.51	0.55	0.67	7.31	3.4	0.190	6.55	65.0	0.43	29.67	0.04	1.662	155.51	10.71	48.3	41.7	10.0	-7.71	2.19	0.63	0.89	1.74	1608	168	24	0	0	0	0	logfile
✔	8PKF	17737	2024-09-23	2023-06-26	2.3673	1.91	2.30	2.6	0.013	1.73	0.0	0.12	11.30	0.01	2.355	0.12	0.00	2.3	97.7	0.0	-2.77	0.43	0.75	4.64	2.6	0.004	0.62	0.0	0.05	16.55	0.00	2.646	5.92	2.56	4.5	95.5	0.0	-2.25	1.95	0.53	0.84	4.83	4308	552	6	0	0	0	0	logfile
✔	8UFE	42205	2024-09-23	2023-10-04	3.68	4.10	3.84	4.1	0.005	0.79	0.0	0.04	19.16	0.00	2.205	12.83	1.76	5.3	94.4	0.2	1.92	0.49	0.72	-0.41	4.1	0.003	0.66	0.0	0.04	18.34	0.00	2.458	12.83	5.88	5.3	94.4	0.2	1.75	0.38	0.53	0.74	0.06	3449	470	2	0	1	0	0	logfile
✔	7QV5	14167	2024-09-23	2022-01-19	3.0	3.03	1.88	3.0	0.010	0.44	0.0	0.06	9.44	0.00	2.689	1.08	0.00	6.2	93.8	0.0	-2.64	0.46	0.86	7.89	3.1	0.002	0.37	0.0	0.06	12.18	0.00	2.260	0.36	0.00	0.7	99.3	0.0	-2.06	0.88	0.50	0.89	6.33	5562	342	45	0	18	0	2997	logfile
✔	8SDZ	40355	2024-09-23	2023-04-07	2.86	3.25	2.87	3.2	0.003	0.59	0.0	0.04	16.55	0.00	2.135	4.33	1.43	0.8	99.2	0.0	0.91	0.56	0.82	2.83	3.2	0.005	0.62	0.0	0.04	16.61	0.00	2.607	4.71	3.57	1.4	98.6	0.0	1.74	0.42	0.59	0.84	2.65	3913	500	2	0	1	22	0	logfile
✔	6M7D	30129	2024-09-23	2020-03-18	2.9	2.82	—	2.8	0.010	1.03	0.0	0.07	14.95	0.00	2.157	15.48	0.58	2.4	97.6	0.0	-0.46	0.35	0.86	4.08	2.8	0.002	0.53	0.0	0.04	16.74	0.00	2.467	7.82	1.46	1.7	98.3	0.0	2.09	0.83	0.34	0.88	3.29	3280	412	2	6	0	0	0	logfile
✔	8QRV	18627	2024-09-23	2023-10-09	2.9	3.28	2.88	3.3	0.004	0.57	0.0	0.04	14.31	0.00	2.373	6.73	0.61	1.2	98.8	0.0	2.08	0.55	0.83	2.96	3.3	0.003	0.52	0.0	0.04	15.37	0.00	2.498	4.85	2.44	0.7	99.3	0.0	2.96	0.47	0.60	0.86	2.70	3111	419	2	0	1	0	0	logfile
✔	8JEX	36202	2024-09-23	2023-05-16	3.1	3.05	2.75	3.3	0.012	1.13	0.0	0.06	12.57	0.00	2.505	7.63	0.00	3.8	96.2	0.0	-4.98	0.45	0.83	2.64	3.2	0.004	0.56	0.0	0.05	14.06	0.00	2.607	1.37	2.14	3.5	96.5	0.0	-3.09	0.94	0.47	0.87	3.07	2616	330	18	0	60	0	0	logfile
✔	8QN7	18509	2024-09-23	2023-09-25	2.7	2.38	2.18	2.7	0.010	1.43	0.0	0.09	13.54	0.01	2.570	5.31	3.45	8.3	91.7	0.0	-3.22	0.45	0.93	6.45	2.6	0.003	0.50	0.0	0.05	18.21	0.00	2.686	2.48	0.69	6.7	93.3	0.0	-3.35	1.19	0.43	0.92	6.22	1455	190	5	0	0	0	0	logfile
✔	8VDC	43146	2024-09-23	2023-12-14	3.5	3.36	3.50	3.3	0.006	0.75	0.0	0.05	13.43	0.01	2.377	1.34	0.00	2.1	97.9	0.0	-1.87	0.80	0.85	3.14	3.3	0.002	0.50	0.0	0.04	15.19	0.00	2.594	2.84	1.04	1.7	98.3	0.0	1.19	1.47	0.80	0.85	2.63	47064	5736	24	0	0	0	0	logfile
✔	8DZW	27808	2024-09-23	2022-08-08	2.46	2.76	2.62	2.8	0.007	1.16	9.0	0.06	14.16	0.01	2.112	3.13	1.29	5.5	94.4	0.1	-0.58	0.71	0.81	3.50	2.7	0.005	0.80	1.0	0.05	15.66	0.00	2.091	2.21	1.16	5.3	94.7	0.0	-0.51	1.64	0.71	0.84	3.18	40250	2655	9	0	0	0	20048	logfile
✔	7ABK	11698	2024-09-23	2020-09-07	3.6	4.10	3.49	3.9	0.004	0.66	0.0	0.04	16.30	0.00	2.315	5.67	1.23	1.5	98.5	0.0	0.91	0.28	0.87	1.10	3.9	0.003	0.70	0.0	0.03	19.72	0.00	2.500	5.67	4.94	2.1	97.9	0.0	4.99	1.33	0.28	0.86	1.10	1574	196	1	0	0	0	0	logfile
✔	8K1J	36793	2024-09-23	2023-07-11	3.0	3.30	3.06	3.4	0.001	0.34	0.0	0.03	13.84	0.00	2.296	2.67	0.00	0.4	99.6	0.0	5.90	0.58	0.77	0.99	3.3	0.003	0.52	0.0	0.04	14.88	0.00	2.513	2.55	2.21	2.1	97.9	0.0	4.72	0.60	0.62	0.83	1.10	4069	484	6	0	11	12	0	logfile
✔	8oo9	17007	2024-09-23	2023-04-04	3.2	2.32	3.17	3.1	0.010	1.70	0.0	0.06	20.61	0.01	1.879	4.84	0.00	2.3	97.7	0.0	-2.21	0.81	0.78	3.72	3.1	0.004	1.04	0.0	0.04	22.24	0.00	1.232	6.46	1.76	2.6	97.4	0.0	-0.67	1.37	0.83	0.81	2.20	4516	439	4	42	3	0	0	logfile
✔	7YNG	33961	2024-09-23	2022-07-30	3.1	3.08	2.33	3.4	0.009	0.85	0.0	0.06	13.71	0.00	2.192	9.66	0.00	10.4	89.6	0.0	-4.25	0.36	0.76	3.68	3.4	0.002	0.49	0.0	0.05	14.82	0.00	2.483	2.60	0.37	3.0	97.0	0.0	-2.05	0.39	0.35	0.75	3.65	2628	378	6	0	0	0	0	logfile
✔	8XCT	38254	2024-09-23	2023-12-10	2.87	3.06	—	3.0	0.009	1.09	0.0	0.06	16.21	0.01	2.278	4.37	5.00	2.2	97.8	0.0	1.25	0.45	0.88	4.06	3.0	0.005	0.56	0.0	0.04	16.54	0.00	2.478	4.07	1.18	3.4	96.4	0.2	1.55	1.73	0.43	0.90	4.40	3358	417	2	0	1	28	0	logfile
✔	8JJo	36361	2024-09-23	2023-05-31	3.4	3.75	3.53	3.8	0.003	0.64	0.0	0.04	17.70	0.00	2.184	10.68	0.31	5.7	94.3	0.0	-0.11	0.40	0.71	1.06	3.8	0.003	0.60	0.0	0.04	18.32	0.00	2.628	8.22	3.72	5.9	94.1	0.0	0.86	0.40	0.36	0.73	1.19	3016	375	2	0	1	0	0	logfile

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