Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HAo	34598	2024-09-28	2022-10-26	3.76	3.06	3.49	3.8	0.003	0.50	0.0	0.04	15.90	0.00	1.785	5.73	0.40	2.9	96.9	0.2	1.91	0.58	0.52	-0.03	3.8	0.004	0.87	0.0	0.05	17.59	0.00	2.369	14.68	4.32	4.4	95.6	0.0	0.40	1.24	0.64	0.69	0.90	18479	2314	12	0	0	0	0	logfile
✔	5VZL	8749	2024-09-26	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	17.27	0.01	2.216	7.72	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	17.0	0.002	0.66	0.0	0.04	18.12	0.00	1.459	9.05	1.33	4.8	95.2	0.0	-0.63	1.15	0.37	0.16	0.81	13915	1451	3	115	1	0	0	logfile
✔	3J7A	2660	2024-09-28	2014-06-03	3.2	3.24	3.33	3.2	0.008	1.39	49.0	0.10	24.28	0.01	1.715	4.56	15.41	10.5	85.4	4.2	-2.49	0.31	0.55	-0.02	3.2	0.005	0.77	2.0	0.04	22.83	0.01	1.942	14.65	4.57	7.7	91.1	1.1	-1.52	2.47	0.39	0.77	0.98	68866	4106	35	1682	69	0	0	logfile
✔	7Q1Z	13776	2024-09-30	2021-10-22	3.4	2.41	—	4.0	0.004	0.61	0.0	0.04	12.72	0.00	2.074	6.27	0.04	2.2	97.8	0.0	0.60	0.48	0.31	-0.02	2.2	0.004	0.75	0.0	0.05	15.22	0.00	2.471	9.67	2.11	3.0	97.0	0.0	-0.15	1.60	0.74	0.75	1.39	23694	2916	21	0	63	0	0	logfile
✔	8ERL	28554	2024-09-24	2022-10-12	3.9	4.58	3.40	4.1	0.005	1.28	0.0	0.07	15.42	0.01	2.296	4.84	0.27	9.5	90.5	0.0	-3.82	0.86	0.76	-0.02	4.1	0.003	0.79	0.0	0.05	15.79	0.00	2.578	17.65	3.43	8.4	91.6	0.0	-2.38	1.03	0.87	0.79	-0.22	6600	830	2	0	0	0	0	logfile
✔	6RWE	10038	2024-09-25	2019-06-04	3.0	3.12	—	3.7	0.009	1.02	1.0	0.06	13.23	0.01	1.975	6.33	0.73	7.4	92.5	0.1	-4.84	0.44	0.32	0.00	3.1	0.004	0.81	0.0	0.05	18.20	0.00	2.036	10.93	2.59	5.2	94.8	0.0	-1.27	1.49	0.75	0.78	1.44	53719	6454	26	95	8	0	0	logfile
✘	6RBE	4794	2024-09-28	2019-04-10	3.8	4.03	3.73	40.0	0.007	1.27	0.0	0.06	23.46	0.01	2.076	9.10	1.35	11.9	86.8	1.2	-4.17	0.25	0.02	0.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile
✔	8GTB	34248	2024-09-27	2022-09-08	3.43	3.83	2.04	5.0	0.007	0.71	0.0	0.04	12.85	0.00	2.213	7.43	0.00	3.1	96.9	0.0	-3.27	0.48	0.25	0.01	3.8	0.005	0.76	0.0	0.04	16.00	0.00	2.461	4.72	4.62	4.1	95.9	0.0	-2.06	2.56	0.75	0.87	1.48	17136	2340	18	0	0	0	0	logfile
✔	8E5G	27912	2024-09-25	2022-08-22	3.9	4.43	4.33	4.2	0.006	1.05	10.0	0.10	17.24	0.00	1.918	47.42	0.00	9.6	89.9	0.5	-2.33	0.62	0.75	0.01	4.2	0.004	0.96	0.0	0.04	18.74	0.00	1.546	11.99	3.10	7.7	91.5	0.8	-2.83	0.79	0.63	0.75	0.51	9065	1100	10	0	20	0	0	logfile
✔	7S8V	24927	2024-09-26	2021-09-20	3.73	4.42	—	3.9	0.004	0.65	0.0	0.09	13.87	0.00	2.098	5.61	0.14	7.0	93.0	0.0	-3.48	0.68	0.64	0.04	3.9	0.003	0.68	0.0	0.05	14.24	0.00	2.094	8.62	0.85	6.6	93.4	0.0	-1.95	1.16	0.70	0.70	0.94	12502	782	7	0	12	0	6045	logfile
✔	6XSS	22305	2024-09-24	2020-07-16	3.7	3.37	—	3.3	0.003	0.63	0.0	0.04	12.31	0.00	1.843	28.34	0.00	2.5	97.5	0.0	-0.32	0.74	0.78	0.04	3.3	0.003	0.78	0.0	0.04	17.10	0.00	2.470	16.13	2.06	0.9	99.1	0.0	2.42	1.28	0.74	0.79	0.62	8048	1040	4	0	0	0	0	logfile
✔	6K9F	9948	2024-09-27	2019-06-15	3.7	7.50	4.15	7.2	0.002	0.45	0.0	0.03	11.87	0.00	2.356	5.29	0.00	0.0	100.0	0.0	-0.68	0.66	0.76	0.04	7.0	0.004	1.19	0.0	0.05	17.56	0.00	2.378	21.33	4.75	1.7	98.3	0.0	-0.24	3.84	0.68	0.84	0.41	8484	1044	12	0	0	0	0	logfile
✔	8J88	36063	2024-09-24	2023-05-01	3.49	4.36	3.55	3.5	0.002	0.56	0.0	0.04	11.87	0.00	2.205	5.61	0.00	4.8	95.2	0.0	-0.95	0.81	0.59	0.05	3.5	0.003	0.61	0.0	0.04	14.29	0.00	2.608	10.01	1.07	6.9	93.1	0.0	-0.02	1.09	0.82	0.63	0.63	7846	954	2	0	0	0	0	logfile
✔	8U1L	41816	2024-09-26	2023-09-01	3.7	5.25	3.73	3.0	0.005	1.07	0.0	0.05	14.74	0.00	1.947	14.42	0.00	2.2	97.8	0.0	0.39	0.91	0.70	0.05	2.9	0.005	0.75	0.0	0.04	16.02	0.00	1.910	19.02	2.52	3.8	96.2	0.0	-0.07	0.57	0.93	0.81	0.19	12595	1543	6	0	4	0	0	logfile
✔	6Q2o	20576	2024-09-27	2019-08-08	3.65	3.77	—	3.9	0.004	0.79	0.0	0.05	8.54	0.01	1.534	3.25	0.12	5.6	94.4	0.0	-3.75	0.48	0.23	0.05	3.6	0.004	0.75	0.0	0.04	14.86	0.00	2.223	11.77	2.47	7.0	93.0	0.0	-1.66	2.07	0.68	0.65	0.67	15196	1900	8	0	20	0	0	logfile
✔	6RUo	10007	2024-09-24	2019-05-28	3.5	3.56	—	4.0	0.007	1.05	0.0	0.06	13.25	0.01	2.170	7.99	0.40	10.5	89.4	0.1	-4.99	0.53	0.29	0.05	3.5	0.004	0.83	0.0	0.05	17.67	0.01	2.032	15.38	2.12	8.2	91.8	0.0	-2.58	2.41	0.68	0.60	0.63	50792	6086	26	93	8	0	0	logfile
✔	6N1H	8902	2024-09-25	2018-11-08	3.17	3.22	—	3.2	0.006	1.13	0.0	0.06	12.23	0.01	0.657	32.07	3.97	7.4	92.6	0.0	-7.22	0.39	0.46	0.05	3.2	0.004	1.19	1.0	0.05	17.32	0.00	2.040	9.58	1.10	4.8	95.2	0.0	0.41	4.74	0.62	0.84	1.96	10991	1328	16	0	0	0	0	logfile
✔	6N1i	8903	2024-09-25	2018-11-08	3.58	3.63	—	3.6	0.009	1.13	0.0	0.06	9.87	0.01	1.147	27.10	0.00	2.4	97.6	0.0	-6.04	0.42	0.58	0.05	3.6	0.004	0.79	0.0	0.04	17.90	0.00	2.424	13.89	2.77	4.7	95.3	0.0	-0.38	2.35	0.57	0.83	2.15	11136	1360	16	0	0	0	0	logfile
✔	8FTE	29424	2024-09-27	2023-01-12	3.8	3.91	3.67	3.8	0.003	0.63	0.0	0.04	12.35	0.00	2.203	12.31	5.56	3.4	96.6	0.0	0.06	0.48	0.50	0.06	3.8	0.003	0.76	0.0	0.04	14.75	0.00	2.519	6.50	5.49	5.2	94.8	0.0	1.67	1.58	0.56	0.57	0.68	14564	2046	22	0	0	0	0	logfile
✔	8UoY	42441	2024-09-26	2023-10-20	3.4	3.52	3.51	3.4	0.016	2.25	10.0	0.11	17.12	0.02	2.532	0.83	6.89	12.1	85.3	2.6	-3.89	0.21	0.24	0.07	3.4	0.003	0.74	0.0	0.04	17.61	0.00	2.251	11.83	6.01	10.6	89.2	0.2	-3.21	0.86	0.22	0.25	0.30	13188	872	2	0	0	0	6544	logfile

• ← previous
• Page 3 of 538
• next →