Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CL1	16709	2024-09-27	2023-02-16	3.35	3.67	2.87	3.6	0.008	0.93	0.0	0.06	12.18	0.01	0.393	14.11	0.54	0.0	99.1	0.9	-1.05	0.61	0.75	3.54	3.7	0.003	0.59	0.0	0.04	15.23	0.01	2.541	7.98	0.90	2.0	97.6	0.5	2.06	0.68	0.64	0.77	3.05	10494	1362	12	0	0	0	0	logfile
✔	7KZo	23084	2024-09-25	2020-12-10	3.3	2.88	—	3.3	0.005	0.86	1.0	0.05	15.08	0.01	0.399	14.01	0.29	4.0	96.0	0.0	-1.81	0.77	0.76	2.07	3.3	0.004	0.72	0.0	0.04	16.98	0.00	1.843	9.09	2.18	3.3	96.7	0.0	0.59	1.49	0.78	0.79	1.63	54110	6873	34	8	14	0	0	logfile
✘	8RK5	19260	2024-09-26	2023-12-23	4.54	3.79	4.58	3.8	0.003	0.67	0.0	0.04	12.15	0.01	0.400	21.86	0.00	4.5	95.5	0.0	-1.01	0.67	0.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14424	1866	6	0	0	0	0	logfile
✔	6i26	0328	2024-09-29	2018-10-31	4.3	4.37	—	4.2	0.005	0.89	0.0	0.05	8.22	0.01	0.411	6.12	0.50	6.4	93.3	0.3	-6.25	0.75	0.60	—	4.2	0.004	0.72	0.0	0.04	10.69	0.00	2.455	6.37	0.00	7.4	92.6	0.0	-0.27	0.97	0.83	0.77	—	22765	3366	2	0	221	0	0	logfile
✔	8SEX	40432	2024-09-29	2023-04-10	2.84	2.99	2.84	3.0	0.005	0.56	0.0	0.04	12.78	0.01	0.419	6.47	2.15	2.8	97.1	0.2	1.60	0.63	0.81	2.20	3.0	0.003	0.52	0.0	0.04	16.20	0.00	2.555	4.82	1.79	1.7	98.1	0.2	2.63	0.57	0.64	0.83	2.32	20568	2504	8	0	8	0	0	logfile
✔	7UEG	26474	2024-09-24	2022-03-21	4.0	4.46	4.14	4.2	0.034	0.79	6.0	0.05	12.16	0.01	0.436	24.88	0.00	9.0	90.9	0.2	-2.77	0.67	0.78	—	4.1	0.032	0.99	4.0	0.05	14.34	0.01	1.817	21.96	1.59	11.3	88.5	0.2	-3.08	1.28	0.69	0.83	—	49968	6480	36	0	0	0	0	logfile
✔	8iV0	35735	2024-09-27	2023-03-25	2.9	3.28	2.96	3.1	0.007	1.23	0.0	0.07	13.35	0.01	0.445	26.98	0.66	10.8	89.0	0.1	-5.21	0.58	0.39	0.36	3.1	0.004	0.91	0.0	0.05	16.99	0.01	2.322	20.81	3.10	8.8	91.2	0.0	-3.69	1.39	0.70	0.63	1.13	16701	2130	12	0	9	0	0	logfile
✔	7ZGK	14708	2024-09-26	2022-04-03	3.59	4.63	3.57	3.7	0.002	0.45	0.0	0.04	13.81	0.00	0.454	5.10	0.46	2.2	97.6	0.2	1.65	0.73	0.55	1.45	3.8	0.004	0.69	0.0	0.04	15.00	0.00	2.511	9.36	0.80	3.5	96.4	0.1	0.75	2.00	0.91	0.83	2.09	13639	1723	3	0	0	0	0	logfile
✔	6i1X	0326	2024-09-25	2018-10-30	3.7	3.83	—	3.8	0.013	1.81	34.0	0.10	14.94	0.01	0.458	50.06	4.35	7.5	90.6	1.9	-3.51	0.50	0.32	0.28	3.8	0.005	0.86	0.0	0.05	16.69	0.01	2.397	16.68	3.28	8.2	91.6	0.3	-1.84	1.03	0.65	0.61	0.89	54915	7290	15	0	0	0	0	logfile
✔	7B70	12063	2024-09-27	2020-12-09	4.0	4.08	—	3.4	0.008	1.13	3.0	0.06	15.94	0.01	0.463	43.27	4.66	11.9	87.8	0.2	-2.44	0.79	0.66	—	3.1	0.003	0.83	0.0	0.04	16.67	0.00	2.445	23.49	2.47	8.1	91.9	0.0	-1.00	0.93	0.82	0.76	—	17084	2112	10	0	0	0	0	logfile
✔	7SSZ	25417	2024-09-27	2021-11-11	3.25	3.49	—	3.5	0.014	1.70	20.0	0.12	14.90	0.01	0.467	7.21	6.31	5.5	94.5	0.0	-2.29	0.56	0.79	3.16	3.5	0.003	0.59	0.0	0.04	15.34	0.00	2.620	4.95	1.70	3.6	96.4	0.0	1.16	0.58	0.69	0.81	3.59	15283	1908	9	0	3	0	0	logfile
✔	6XJA	22204	2024-09-27	2020-06-23	4.0	4.11	—	3.7	0.023	1.93	31.0	0.12	18.04	0.01	0.468	73.73	18.43	6.1	92.2	1.7	-1.93	0.69	0.54	—	3.8	0.003	0.81	0.0	0.04	17.21	0.01	2.261	18.34	4.08	7.9	92.0	0.1	-2.32	1.96	0.75	0.67	—	16441	2156	5	0	0	0	0	logfile
✔	5Y4o	6805	2024-09-26	2017-08-04	3.8	3.55	—	3.6	0.022	2.44	28.0	0.12	19.88	0.02	0.471	78.50	20.31	7.8	87.8	4.5	-2.08	0.55	0.62	0.20	3.6	0.003	0.78	0.0	0.04	17.51	0.00	2.088	9.81	4.84	6.7	92.6	0.7	-0.40	1.75	0.58	0.73	1.02	12341	1561	7	0	0	0	0	logfile
✔	8RK8	19264	2024-09-25	2023-12-23	3.88	3.77	3.91	4.0	0.003	0.55	0.0	0.05	14.93	0.01	0.476	17.22	0.00	3.2	96.8	0.0	0.36	0.71	0.64	0.77	4.0	0.047	1.13	0.0	0.05	16.96	0.01	2.284	25.27	5.13	4.3	95.7	0.0	-0.52	1.27	0.78	0.84	1.16	11226	1512	6	0	0	0	0	logfile
✔	8HQo	34952	2024-09-26	2022-12-13	3.2	3.45	3.81	4.0	0.006	0.79	0.0	0.05	13.20	0.01	0.497	6.45	0.00	2.6	97.4	0.0	-1.42	0.54	0.57	0.18	3.4	0.005	0.67	3.0	0.04	16.41	0.00	1.767	33.39	2.97	2.9	97.1	0.0	0.47	1.77	0.64	0.81	1.28	62613	7656	33	0	0	0	1902	logfile
✔	8CKW	16704	2024-09-27	2023-02-16	3.12	3.53	3.07	3.4	0.005	0.87	0.0	0.08	12.55	0.01	0.523	4.81	0.00	0.0	100.0	0.0	-0.70	0.57	0.82	3.51	3.4	0.004	0.67	0.0	0.04	16.90	0.00	2.471	8.78	1.20	1.1	98.9	0.0	1.03	1.19	0.58	0.85	2.44	13890	1785	15	0	0	0	0	logfile
✔	7T76	25735	2024-09-27	2021-12-14	4.43	4.68	4.39	4.5	0.022	1.97	2.0	0.14	12.89	0.02	0.530	1.29	0.77	3.4	96.4	0.3	0.31	0.81	0.80	—	4.5	0.004	0.75	0.0	0.05	11.88	0.00	1.085	11.16	0.00	5.2	94.8	0.0	-0.54	1.87	0.81	0.82	—	16587	1934	42	0	104	0	0	logfile
✔	6R1U	4705	2024-09-28	2019-03-15	4.36	6.44	—	3.8	0.009	1.04	0.0	0.06	25.72	0.02	0.544	11.98	6.26	4.7	94.1	1.2	-2.99	0.73	0.45	—	3.9	0.003	0.68	0.0	0.04	25.32	0.00	2.069	10.90	0.00	2.6	97.4	0.1	1.26	1.11	0.89	0.78	—	18394	1550	14	294	4	0	0	logfile
✔	8JYM	36726	2024-09-30	2023-07-03	2.79	3.39	2.76	3.2	0.004	0.55	0.0	0.05	12.78	0.00	0.546	6.93	0.00	3.6	96.4	0.0	0.19	0.83	0.85	3.31	3.2	0.003	0.53	0.0	0.04	13.89	0.00	2.473	3.82	0.66	3.0	97.0	0.0	0.36	0.37	0.85	0.87	2.98	24924	3099	12	0	48	0	0	logfile
✔	6F07	4163	2024-09-25	2017-11-17	3.6	3.68	—	3.7	0.007	0.96	0.0	0.05	10.28	0.01	0.559	5.81	0.70	6.1	93.7	0.2	-3.04	0.47	0.57	1.27	3.6	0.004	0.69	0.0	0.04	15.65	0.00	2.232	8.76	2.54	5.2	94.8	0.0	0.83	1.51	0.56	0.71	0.82	10149	1227	4	0	2	0	0	logfile

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