Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iY7	35816	2024-09-23	2023-04-04	3.71	3.66	3.44	3.6	0.019	4.84	30.0	0.35	18.12	0.00	1.763	38.65	0.00	18.1	81.9	0.0	-5.43	0.30	0.58	2.90	3.5	0.024	3.40	0.0	0.11	26.86	0.01	2.168	45.90	16.67	41.7	51.4	6.9	-6.77	2.44	0.30	0.57	1.40	1464	216	24	0	0	0	0	logfile
✔	7TPK	26058	2024-09-23	2022-01-25	3.4	3.41	—	3.4	0.011	1.40	1.0	0.08	9.83	0.01	2.528	2.12	0.00	4.7	95.3	0.0	-0.98	0.60	0.72	4.39	3.4	0.003	0.60	0.0	0.04	14.85	0.00	2.540	2.12	1.44	3.1	96.9	0.0	-0.87	1.23	0.64	0.80	3.09	1484	194	2	0	1	0	0	logfile
✔	8iK7	35505	2024-09-23	2023-02-28	3.69	3.48	3.31	3.6	0.009	3.75	27.0	0.34	10.51	0.00	1.936	29.98	0.00	13.7	86.3	0.0	-5.90	0.27	0.76	3.67	3.6	0.051	2.58	2.0	0.15	19.79	0.01	2.121	73.21	26.67	55.4	42.3	2.4	-7.57	1.61	0.34	0.87	3.90	1488	216	24	0	0	0	0	logfile
✔	8oLG	16957	2024-09-23	2023-03-30	4.2	3.16	3.54	4.2	0.002	0.41	0.0	0.05	9.55	0.00	2.261	9.57	0.00	13.5	86.5	0.0	-4.82	0.25	0.63	—	4.2	0.006	0.92	0.0	0.05	15.70	0.00	2.530	19.49	0.00	17.8	82.2	0.0	-4.69	1.60	0.30	0.66	—	1490	195	5	0	0	0	0	logfile
✔	8KF4	37198	2024-09-23	2023-08-15	3.0	3.12	2.82	3.2	0.010	0.77	0.0	0.07	12.82	0.00	2.605	1.00	0.00	0.0	100.0	0.0	-4.40	0.39	0.91	6.86	3.3	0.003	0.51	0.0	0.06	14.50	0.00	2.667	0.66	0.67	0.0	100.0	0.0	-1.07	1.20	0.39	0.91	7.60	1500	204	6	0	0	0	0	logfile
✔	8KF5	37199	2024-09-23	2023-08-15	3.4	3.42	3.08	3.6	0.009	0.83	0.0	0.08	15.44	0.00	2.343	20.58	8.00	3.1	96.9	0.0	-3.84	0.38	0.87	7.61	3.5	0.005	0.64	0.0	0.06	15.93	0.00	2.654	4.98	0.00	0.0	100.0	0.0	-0.15	0.91	0.39	0.88	8.28	1500	204	6	0	0	0	0	logfile
✔	8KEW	37170	2024-09-23	2023-08-13	3.3	2.65	2.55	3.4	0.010	0.84	0.0	0.07	14.46	0.00	2.387	8.30	0.00	3.1	96.9	0.0	-3.87	0.36	0.85	5.24	3.4	0.004	0.62	0.0	0.06	16.66	0.00	2.628	2.66	0.67	0.0	100.0	0.0	-0.86	0.39	0.33	0.84	6.28	1500	204	6	0	0	0	0	logfile
✔	8JGC	36230	2024-09-23	2023-05-20	3.44	3.77	3.05	3.8	0.008	1.05	0.0	0.07	15.17	0.01	2.251	23.58	4.35	9.0	90.0	1.0	-3.45	0.55	0.78	2.82	3.8	0.003	0.61	0.0	0.05	15.99	0.00	2.609	5.17	2.48	4.5	95.5	0.0	-0.08	1.31	0.54	0.79	2.63	1516	202	1	0	0	0	0	logfile
✔	8JGA	36228	2024-09-23	2023-05-20	3.68	3.83	3.25	3.8	0.005	0.81	0.0	0.05	14.34	0.01	2.230	16.80	1.24	7.0	92.5	0.5	-2.18	0.58	0.81	2.54	3.8	0.003	0.71	0.0	0.05	16.28	0.00	2.634	10.01	2.48	5.0	95.0	0.0	-1.06	0.43	0.57	0.80	2.22	1516	202	1	0	0	0	0	logfile
✔	6R23	4708	2024-09-23	2019-03-15	4.9	4.57	—	4.6	0.006	1.07	0.0	0.05	16.56	0.01	2.332	7.52	0.00	7.9	92.1	0.0	-4.61	0.60	0.75	—	4.6	0.003	0.70	0.0	0.03	16.71	0.00	2.619	6.54	0.00	6.7	93.3	0.0	0.80	3.40	0.60	0.73	—	1518	182	2	0	0	0	0	logfile
✔	8UPT	42455	2024-09-23	2023-10-23	2.8	3.38	2.84	2.9	0.016	2.20	0.0	0.16	30.45	0.01	1.072	99.56	0.00	0.0	0.0	0.0	—	0.23	0.59	—	2.9	0.006	0.73	0.0	0.04	27.67	0.01	2.090	18.78	0.00	0.0	0.0	0.0	—	0.98	0.28	0.88	—	1518	0	1	71	0	0	0	logfile
✔	8oWD	17234	2024-09-23	2023-04-27	3.28	3.36	1.89	3.4	0.012	2.44	0.0	0.12	21.08	0.00	2.506	5.03	16.13	0.0	100.0	0.0	-0.81	0.49	0.81	4.66	3.4	0.006	0.77	0.0	0.05	17.46	0.00	2.567	12.73	7.74	2.1	97.9	0.0	-3.48	0.71	0.46	0.79	6.23	1525	200	5	0	0	0	0	logfile
✔	8UPY	42457	2024-09-23	2023-10-23	2.8	3.43	3.00	2.9	0.012	1.65	0.0	0.12	28.73	0.01	1.040	88.62	0.00	0.0	0.0	0.0	—	0.18	0.52	—	2.9	0.006	0.78	0.0	0.04	27.49	0.01	2.036	25.14	0.00	0.0	0.0	0.0	—	1.07	0.22	0.75	—	1532	0	1	72	0	0	0	logfile
✔	8WCP	37445	2024-09-23	2023-09-13	3.28	3.36	2.33	3.4	0.005	0.83	0.0	0.06	10.78	0.00	2.482	16.18	0.00	11.1	88.9	0.0	-5.74	0.39	0.86	4.76	3.4	0.003	0.58	0.0	0.05	13.43	0.00	2.626	3.35	1.33	7.4	92.6	0.0	-3.85	0.95	0.37	0.87	5.82	1536	168	9	0	57	0	0	logfile
✔	8V85	43023	2024-09-23	2023-12-04	2.9	5.78	4.39	8.6	0.002	0.50	0.0	0.04	8.92	0.00	2.342	5.38	0.00	2.1	97.9	0.0	1.33	0.20	0.11	0.76	5.7	0.004	0.93	0.0	0.05	13.63	0.00	2.434	26.60	0.58	4.6	95.4	0.0	-1.13	4.15	0.34	0.27	1.13	1539	197	1	0	0	0	0	logfile
✔	7ABK	11698	2024-09-23	2020-09-07	3.6	4.10	3.49	3.9	0.004	0.66	0.0	0.04	16.30	0.00	2.315	5.67	1.23	1.5	98.5	0.0	0.91	0.28	0.87	1.10	3.9	0.003	0.70	0.0	0.03	19.72	0.00	2.500	5.67	4.94	2.1	97.9	0.0	4.99	1.33	0.28	0.86	1.10	1574	196	1	0	0	0	0	logfile
✔	6CoZ	7545	2024-09-23	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.75	0.0	0.04	4.73	0.00	2.618	2.65	0.00	5.8	94.2	0.0	-0.93	1.54	0.82	0.76	—	1586	320	2	0	0	0	0	logfile
✔	5M6S	3451	2024-09-23	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.4	0.003	0.63	0.0	0.03	17.89	0.00	2.491	5.65	0.00	6.2	93.8	0.0	2.23	2.29	0.02	0.07	—	1593	98	1	0	0	0	793	logfile
✔	8W77	37336	2024-09-23	2023-08-30	3.61	4.00	3.49	3.9	0.004	0.71	0.0	0.05	10.06	0.01	2.463	0.72	0.00	0.8	99.2	0.0	2.45	0.51	0.74	3.54	3.9	0.002	0.54	0.0	0.04	10.99	0.00	2.642	2.15	3.33	1.2	98.8	0.0	3.92	0.88	0.57	0.78	2.79	1601	260	1	0	0	0	0	logfile
✔	7oG6	12879	2024-09-23	2021-05-06	3.3	3.47	—	2.9	0.008	0.82	0.0	0.04	18.38	0.01	2.325	7.36	6.10	9.6	90.4	0.0	-4.47	0.28	0.82	2.77	2.9	0.003	0.65	0.0	0.04	17.44	0.01	2.519	5.44	3.05	5.1	94.9	0.0	-0.49	0.53	0.27	0.84	2.91	1602	199	2	5	0	0	0	logfile

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