Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PZC	20534	2024-09-24	2019-07-31	4.34	4.63	—	4.4	0.008	1.12	0.0	0.06	11.22	0.01	2.137	7.52	0.42	9.7	90.3	0.0	-5.15	0.60	0.54	—	4.4	0.003	0.72	0.0	0.04	10.65	0.00	2.464	8.95	0.00	3.7	96.2	0.1	0.14	2.77	0.70	0.76	—	7456	1173	1	0	0	0	0	logfile
✔	5G2Y	3332	2024-09-26	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	22.50	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.03	0.0	0.05	28.69	0.01	2.040	55.40	0.00	0.0	0.0	0.0	—	4.00	0.88	0.78	—	13494	0	1	630	0	0	0	logfile
✔	9Eo7	19846	2024-09-23	2024-03-14	2.8	2.99	2.48	3.0	0.009	1.59	1.0	0.10	12.22	0.01	2.583	3.31	1.47	6.7	93.3	0.0	-4.16	0.28	0.88	5.19	3.0	0.004	0.60	0.0	0.05	14.11	0.00	2.525	6.71	1.47	1.3	98.7	0.0	-1.88	0.68	0.27	0.88	3.98	595	77	1	0	0	0	0	logfile
✔	9C4B	45180	2024-09-23	2024-06-03	3.4	3.78	3.57	3.7	0.004	0.73	1.0	0.05	16.50	0.00	1.827	10.64	0.89	5.9	93.3	0.8	-0.46	0.62	0.72	1.52	3.7	0.003	0.55	0.0	0.04	16.89	0.00	2.314	7.04	2.07	7.0	92.8	0.3	-0.53	0.54	0.62	0.72	1.61	6110	393	1	0	0	0	3030	logfile
✔	7R1Y	14243	2024-09-23	2022-02-03	3.0	3.01	2.95	3.0	0.002	0.52	0.0	0.04	13.13	0.00	2.252	6.47	3.44	2.9	97.1	0.0	0.36	0.72	0.71	2.29	3.0	0.004	0.68	0.0	0.05	16.40	0.00	2.492	12.24	3.60	4.1	95.9	0.0	0.63	1.13	0.74	0.74	2.24	5704	723	1	0	0	0	0	logfile
✔	7PTX	13642	2024-09-24	2021-09-27	4.03	4.17	—	3.9	0.003	0.76	0.0	0.05	14.08	0.01	2.202	19.18	0.00	10.6	89.4	0.0	-1.97	0.84	0.72	—	3.9	0.004	0.80	0.0	0.05	14.46	0.00	2.400	17.40	0.00	10.2	89.8	0.0	-1.59	0.57	0.85	0.74	—	7653	1000	1	0	0	0	0	logfile
✔	6YV1	10940	2024-09-23	2020-04-27	3.4	4.09	3.01	3.7	0.002	0.58	0.0	0.04	12.66	0.00	2.272	8.02	1.85	1.0	99.0	0.0	-4.45	0.52	0.76	1.48	3.7	0.003	0.67	0.0	0.04	14.34	0.00	2.552	5.48	1.11	2.2	97.8	0.0	1.02	0.62	0.50	0.86	1.20	2496	328	1	0	0	0	0	logfile
✔	9EoE	19852	2024-09-23	2024-03-14	2.3	2.15	2.26	2.2	0.009	1.54	2.0	0.10	14.88	0.01	2.621	4.14	4.41	8.0	92.0	0.0	-3.08	0.21	0.80	6.35	2.2	0.004	0.72	0.0	0.05	16.64	0.01	2.632	2.51	2.94	5.3	94.7	0.0	-1.85	1.25	0.27	0.83	7.06	595	77	1	0	0	0	0	logfile
✔	7LQ6	23482	2024-09-23	2021-02-13	3.28	4.07	3.16	3.5	0.005	0.76	0.0	0.05	15.77	0.00	1.549	9.45	1.41	5.5	94.4	0.2	-4.83	0.90	0.85	3.36	3.5	0.004	0.62	0.0	0.04	16.19	0.00	2.503	5.86	1.41	4.2	95.8	0.0	0.02	1.01	0.91	0.88	1.84	5267	672	1	0	0	0	0	logfile
✔	7K8D	22728	2024-09-25	2020-09-26	4.33	4.48	—	4.7	0.004	1.12	0.0	0.06	12.53	0.01	2.205	23.61	1.86	4.3	95.7	0.0	-2.98	0.33	0.40	—	4.6	0.003	0.85	0.0	0.04	13.49	0.01	2.405	14.70	0.00	4.6	95.4	0.0	0.41	1.43	0.41	0.49	—	5529	725	1	0	0	0	0	logfile
✔	7K8B	22725	2024-09-23	2020-09-26	2.94	2.86	—	3.1	0.005	0.83	2.0	0.05	14.13	0.01	2.214	14.30	0.68	5.5	94.5	0.0	-0.97	0.41	0.61	1.17	3.1	0.004	0.85	0.0	0.05	16.85	0.01	2.559	14.84	3.72	5.4	94.6	0.0	-0.54	0.47	0.41	0.64	1.02	5543	726	1	0	0	0	0	logfile
✔	6XTB	10618	2024-09-23	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.007	1.34	0.0	0.05	10.99	0.01	2.464	12.02	0.00	28.6	71.4	0.0	-6.17	2.01	0.34	0.65	—	1161	235	1	0	0	0	0	logfile
✔	8QCX	18336	2024-09-23	2023-08-28	3.1	3.36	3.25	3.4	0.003	0.50	0.0	0.04	13.43	0.01	2.275	4.35	0.00	1.0	99.0	0.0	1.06	0.57	0.81	3.18	3.4	0.003	0.56	0.0	0.04	15.79	0.00	2.635	6.44	1.13	1.0	99.0	0.0	2.92	1.21	0.53	0.79	2.32	3283	422	1	0	0	0	0	logfile
✔	7VH3	31985	2024-09-26	2021-09-20	3.6	3.70	—	3.7	0.005	1.09	0.0	0.06	11.49	0.01	2.257	7.95	0.90	8.5	91.0	0.4	-4.84	0.68	0.69	1.85	3.6	0.003	0.73	0.0	0.04	15.81	0.00	2.280	11.40	3.12	7.5	92.5	0.0	-1.28	1.66	0.70	0.73	1.21	12749	1612	1	0	0	0	0	logfile
✔	8oEF	16825	2024-09-26	2023-03-10	4.0	3.42	4.07	4.5	0.002	0.47	0.0	0.04	15.21	0.00	2.235	5.57	0.00	1.7	98.3	0.0	0.95	0.63	0.45	—	4.5	0.002	0.55	0.0	0.04	16.09	0.00	2.346	8.15	1.33	2.4	97.6	0.0	1.01	0.58	0.65	0.50	—	9687	612	1	0	0	0	4859	logfile
✔	6V6C	21068	2024-09-23	2019-12-04	4.5	4.50	—	4.4	0.003	0.55	0.0	0.04	13.78	0.00	2.226	7.10	0.00	5.1	94.9	0.0	-4.56	0.42	0.82	—	4.5	0.003	0.66	0.0	0.04	14.62	0.00	2.604	5.23	0.00	4.7	95.3	0.0	-0.20	2.01	0.42	0.81	—	4007	497	1	0	0	0	0	logfile
✔	7AWA	11928	2024-09-23	2020-11-06	3.5	3.83	—	3.6	0.003	0.64	0.0	0.04	14.22	0.00	2.126	6.77	0.00	5.8	94.2	0.0	-2.52	0.57	0.81	2.14	3.6	0.002	0.51	0.0	0.04	15.12	0.00	2.434	4.70	0.34	3.4	96.6	0.0	-0.61	1.18	0.54	0.80	1.57	5310	328	1	0	0	0	2703	logfile
✔	7W84	32351	2024-09-26	2021-12-07	3.4	2.66	—	3.4	0.004	0.74	1.0	0.05	16.68	0.00	1.982	18.13	7.85	12.9	87.0	0.1	-3.60	0.79	0.78	1.21	3.4	0.005	0.88	0.0	0.05	18.06	0.01	2.286	17.05	5.63	12.0	88.0	0.0	-1.94	0.85	0.80	0.80	1.13	7879	995	1	0	0	0	0	logfile
✔	6XJB	22205	2024-09-25	2020-06-23	3.8	4.06	—	3.9	0.002	0.56	0.0	0.04	13.11	0.00	2.165	9.70	0.00	8.6	91.4	0.0	-3.06	0.88	0.82	1.76	3.9	0.004	0.66	0.0	0.04	15.43	0.00	2.491	10.66	3.43	7.5	92.5	0.0	-1.48	1.82	0.88	0.86	1.89	10070	1277	1	0	0	0	0	logfile
✔	7SYF	25524	2024-09-25	2021-11-24	4.2	3.03	3.92	2.2	0.013	1.86	8.0	0.10	14.32	0.01	2.460	1.62	1.31	3.9	96.1	0.0	-1.56	0.67	0.61	—	2.2	0.003	0.75	0.0	0.04	13.86	0.00	2.389	13.84	0.08	3.2	96.8	0.0	0.87	1.16	0.68	0.64	—	11108	1391	1	0	0	0	0	logfile

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