Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8H8J	34549	2024-09-24	2022-10-23	3.2	2.26	3.27	2.1	0.003	0.66	0.0	0.04	10.44	0.00	1.939	9.85	2.59	2.3	97.6	0.1	-0.78	0.71	0.72	2.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8842	1139	6	0	5	0	0	logfile
✘	7SCJ	25036	2024-09-25	2021-09-28	3.4	2.31	2.97	2.0	0.004	0.60	0.0	0.05	14.79	0.01	2.200	9.22	0.00	5.7	94.3	0.0	-0.25	0.75	0.72	3.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9336	1131	6	2	7	0	0	logfile
✔	7S8P	24900	2024-09-24	2021-09-18	2.6	2.11	2.62	1.8	0.005	0.75	0.0	0.05	12.74	0.00	2.183	3.18	0.00	5.8	94.2	0.0	-2.01	0.73	0.75	4.73	1.9	0.003	0.64	0.0	0.04	15.29	0.00	2.480	1.72	3.23	5.1	94.9	0.0	0.29	0.36	0.84	0.84	3.97	8093	1089	6	0	1	0	0	logfile
✔	8EU8	28608	2024-09-26	2022-10-18	3.73	2.48	3.71	2.2	0.014	1.81	0.0	0.10	12.70	0.01	1.755	3.29	0.47	5.4	94.6	0.0	-0.91	0.73	0.74	3.31	2.2	0.003	0.71	0.0	0.05	15.30	0.00	2.441	6.19	2.73	3.1	96.9	0.0	-0.01	0.64	0.75	0.75	1.93	14181	1692	24	0	63	0	0	logfile
✔	8PPo	17806	2024-09-23	2023-07-07	2.0	2.30	1.95	2.2	0.008	1.20	1.0	0.07	13.41	0.01	2.625	0.29	0.00	6.7	93.3	0.0	0.71	0.58	0.84	6.50	2.2	0.004	0.55	0.0	0.06	13.87	0.00	2.638	0.29	1.04	0.0	100.0	0.0	1.16	0.37	0.50	0.88	5.79	1696	240	16	0	0	0	0	logfile
✔	7WZ7	32905	2024-09-24	2022-02-17	2.83	2.26	—	2.0	0.010	0.95	0.0	0.06	11.50	0.01	2.230	6.56	0.00	5.4	94.6	0.0	-0.69	0.71	0.71	2.86	2.0	0.005	0.69	0.0	0.04	14.93	0.00	2.387	11.05	1.99	4.9	95.1	0.0	0.46	1.19	0.72	0.73	1.67	8676	1108	5	0	0	0	0	logfile
✔	8SAZ	40285	2024-09-28	2023-04-02	3.9	4.14	3.89	4.1	0.006	0.98	0.0	0.05	17.30	0.01	2.168	2.47	0.14	5.4	94.5	0.1	-1.89	0.72	0.76	2.12	4.1	0.003	0.78	0.0	0.05	15.55	0.00	2.473	6.90	2.81	4.4	95.3	0.2	-0.85	1.44	0.76	0.81	2.20	19960	2466	24	0	65	0	0	logfile
✔	8SAS	40278	2024-09-28	2023-04-01	4.0	4.28	4.02	4.2	0.008	1.18	0.0	0.06	17.26	0.01	2.002	4.09	0.00	8.7	90.9	0.4	-3.16	0.69	0.72	—	4.2	0.004	0.84	0.0	0.05	15.63	0.00	2.305	9.78	3.41	6.8	93.0	0.2	-2.14	1.00	0.74	0.80	—	20028	2472	24	0	66	0	0	logfile
✔	6E0H	8948	2024-09-25	2018-07-06	4.05	4.18	—	4.0	0.009	1.16	0.0	0.06	11.25	0.01	2.262	5.16	0.40	7.6	92.4	0.0	-5.82	0.79	0.80	—	4.0	0.003	0.76	0.0	0.04	12.51	0.00	2.323	7.69	0.00	5.2	94.8	0.0	-0.59	0.90	0.79	0.80	—	9524	1172	4	0	4	0	0	logfile
✔	7V9M	31825	2024-09-24	2021-08-26	3.29	2.28	—	2.1	0.004	0.65	0.0	0.05	13.19	0.01	2.195	4.52	0.23	4.4	95.6	0.0	-0.30	0.72	0.72	3.08	2.1	0.003	0.64	0.0	0.04	15.56	0.00	2.458	8.23	2.39	3.2	96.8	0.0	0.73	1.17	0.73	0.75	2.05	8138	1029	6	0	0	0	0	logfile
✔	7XKF	33250	2024-09-26	2022-04-19	2.4	3.28	2.35	3.0	0.007	0.68	0.0	0.05	15.09	0.01	2.055	14.66	1.06	4.4	95.6	0.0	0.77	0.72	0.82	3.01	3.0	0.004	0.66	0.0	0.04	16.39	0.00	2.438	7.14	2.59	4.0	96.0	0.0	0.81	0.48	0.74	0.85	2.70	7961	1008	6	0	1	0	0	logfile
✔	7T20	25607	2024-09-29	2021-12-02	4.7	8.85	—	7.6	0.004	0.63	0.0	0.04	12.59	0.00	2.079	7.50	3.24	2.3	97.6	0.2	0.68	0.91	0.76	—	7.4	0.003	0.63	0.0	0.04	11.88	0.00	1.883	17.72	0.00	3.8	96.2	0.0	1.02	1.62	0.92	0.76	—	21106	2661	11	10	8	0	0	logfile
✔	7RTM	24683	2024-09-25	2021-08-13	3.4	3.54	3.61	20.0	0.031	3.05	44.0	0.18	16.56	0.03	1.051	1.40	2.80	6.8	93.0	0.3	-1.12	0.10	0.04	0.21	3.5	0.003	0.86	0.0	0.04	16.11	0.00	2.352	10.47	2.00	4.7	95.3	0.1	0.01	4.69	0.66	0.78	1.46	9161	1142	6	0	12	0	0	logfile
✔	7L1R	23116	2024-09-30	2020-12-15	3.1	2.19	—	2.1	0.011	1.76	28.0	0.11	14.95	0.01	1.965	4.03	3.32	3.3	96.7	0.0	-0.59	0.65	0.71	2.77	2.1	0.003	0.66	0.0	0.04	17.61	0.01	1.861	7.24	2.97	3.0	97.0	0.0	0.60	0.70	0.78	0.80	2.32	24199	3118	13	0	12	0	0	logfile
✔	7UM7	26599	2024-09-24	2022-04-06	2.75	2.13	2.74	1.9	0.002	0.48	0.0	0.04	13.05	0.01	2.220	2.88	0.00	2.8	97.2	0.0	-0.25	0.81	0.80	4.23	1.9	0.003	0.56	0.0	0.04	15.04	0.00	2.488	3.01	2.76	4.1	95.9	0.0	0.74	0.33	0.83	0.82	3.69	8165	1089	6	0	1	0	0	logfile
✔	6PQQ	20451	2024-09-29	2019-07-09	2.81	3.26	2.82	3.2	0.011	1.26	0.0	0.07	21.09	0.01	2.316	4.85	0.20	3.4	96.6	0.0	-3.37	0.69	0.79	2.50	3.2	0.003	0.61	0.0	0.04	18.60	0.00	2.422	5.67	2.58	2.1	97.9	0.0	2.02	1.27	0.73	0.84	1.90	20016	2416	8	0	28	0	0	logfile
✔	6WBX	21600	2024-09-25	2020-03-27	3.5	3.82	3.55	3.7	0.012	1.07	0.0	0.06	13.49	0.01	2.190	4.07	0.11	7.9	92.0	0.1	-5.51	0.77	0.87	3.70	3.7	0.003	0.62	0.0	0.04	14.08	0.00	2.209	4.95	1.43	4.9	95.1	0.0	-1.45	0.41	0.72	0.84	2.82	9170	1264	2	0	2	0	0	logfile
✔	7XKD	33248	2024-09-26	2022-04-19	2.4	3.28	2.35	3.0	0.007	0.68	0.0	0.05	15.11	0.01	1.832	14.21	0.94	4.4	95.6	0.0	0.77	0.72	0.82	3.01	3.0	0.003	0.65	0.0	0.04	16.46	0.00	2.437	6.95	3.66	4.3	95.7	0.0	0.81	0.45	0.74	0.86	2.71	7962	1008	6	0	1	1	0	logfile
✔	8DPi	27636	2024-09-24	2022-07-15	3.4	2.28	3.42	2.1	0.003	0.52	0.0	0.06	11.00	0.00	2.211	4.16	0.98	1.3	98.6	0.1	1.79	0.73	0.68	1.99	2.1	0.003	0.65	0.0	0.04	14.29	0.00	2.543	5.98	3.54	3.2	96.8	0.0	1.24	0.60	0.75	0.73	2.45	8150	1093	6	0	2	0	0	logfile
✔	6CNB	7530	2024-09-23	2018-03-08	4.1	4.34	—	4.2	0.007	1.15	2.0	0.06	14.17	0.01	1.836	32.34	0.60	17.4	81.2	1.4	-5.08	0.73	0.68	—	4.2	0.006	0.92	0.0	0.05	15.42	0.01	1.993	17.67	0.00	12.6	86.3	1.0	-2.42	1.47	0.83	0.82	—	47837	5695	28	112	69	0	0	logfile

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