Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PD4	13330	2024-09-24	2021-08-04	4.9	4.13	—	7.8	0.005	0.87	0.0	0.05	14.59	0.00	2.035	38.59	0.00	11.7	88.3	0.0	-4.80	0.73	0.72	—	7.9	0.003	0.82	0.0	0.04	13.41	0.00	2.381	13.24	0.00	4.1	95.9	0.0	-0.25	0.98	0.73	0.72	—	6676	842	1	0	0	0	0	logfile
✔	8TZJ	41760	2024-09-26	2023-08-27	3.51	3.99	3.46	3.9	0.004	0.67	0.0	0.04	12.13	0.00	2.229	2.62	0.15	1.8	98.2	0.0	2.16	0.65	0.77	1.68	3.9	0.004	0.60	0.0	0.04	15.19	0.00	1.832	4.86	0.59	2.5	97.5	0.0	2.31	0.88	0.70	0.81	1.28	13346	846	6	0	4	0	6772	logfile
✔	7Wo4	32638	2024-09-28	2022-01-20	4.47	3.18	—	3.4	0.003	0.48	0.0	0.04	9.88	0.00	2.234	5.78	3.89	6.1	93.9	0.0	-3.76	0.83	0.71	—	3.4	0.004	0.67	0.0	0.05	11.19	0.00	2.357	7.56	0.00	9.2	90.8	0.0	-2.12	0.84	0.82	0.72	—	71208	9096	24	0	90	0	0	logfile
✔	7NJS	12417	2024-09-29	2021-02-17	2.46	2.50	—	2.2	0.002	0.50	0.0	0.04	16.98	0.00	1.978	4.14	1.22	1.7	98.3	0.0	2.22	0.85	0.88	4.05	2.2	0.004	0.53	0.0	0.04	16.95	0.00	1.779	3.32	1.14	2.6	97.4	0.0	1.68	0.26	0.86	0.90	4.03	74642	4932	31	0	11	16	37346	logfile
✔	5G05	3388	2024-09-26	2016-03-16	3.4	3.84	—	3.5	0.016	1.81	55.0	0.10	18.98	0.01	0.612	56.69	17.76	4.5	93.6	1.8	-0.14	0.85	0.76	1.42	3.5	0.005	0.92	3.0	0.04	17.72	0.01	2.107	15.74	3.92	4.6	94.9	0.5	0.72	1.69	0.89	0.85	1.27	63181	8027	21	0	3	0	0	logfile
✔	7B5M	12040	2024-09-26	2020-12-05	3.91	4.16	3.79	3.9	0.004	0.86	1.0	0.05	15.58	0.01	2.001	15.24	0.22	10.2	89.8	0.0	-2.61	0.83	0.79	1.50	3.9	0.003	0.68	1.0	0.04	17.03	0.00	2.167	11.25	1.97	8.5	91.5	0.0	-0.97	0.46	0.83	0.79	1.39	12530	1561	10	0	5	0	0	logfile
✔	7NJR	12412	2024-09-29	2021-02-17	2.56	2.54	—	2.4	0.004	0.52	0.0	0.04	14.80	0.00	1.940	5.25	0.00	3.0	96.9	0.1	1.36	0.85	0.87	4.22	2.1	0.004	0.61	0.0	0.04	15.88	0.00	1.816	4.38	0.60	3.2	96.7	0.1	1.48	0.89	0.86	0.89	3.94	74587	4930	31	0	11	16	37321	logfile
✔	8HGH	34739	2024-09-30	2022-11-14	4.16	3.79	4.05	3.7	0.003	0.62	2.0	0.05	12.05	0.01	2.298	3.92	5.83	3.4	96.6	0.0	-1.78	0.76	0.69	—	3.7	0.006	0.81	0.0	0.05	12.64	0.01	2.325	13.48	0.00	6.7	93.3	0.0	-1.22	0.96	0.79	0.75	—	25512	3266	6	0	2	0	0	logfile
✔	7NSC	12564	2024-09-25	2021-03-05	3.3	3.46	3.32	3.4	0.005	0.71	0.0	0.04	14.50	0.00	1.732	9.65	0.10	8.3	91.7	0.0	-1.46	0.77	0.81	2.53	3.5	0.003	0.58	0.0	0.04	16.29	0.00	2.540	6.33	3.12	6.6	93.4	0.0	-0.39	0.89	0.77	0.82	1.59	9327	1230	4	0	0	0	0	logfile
✔	7KYA	23073	2024-09-26	2020-12-07	3.5	3.62	—	3.6	0.005	0.63	0.0	0.05	14.65	0.00	1.508	13.49	1.03	7.2	92.6	0.1	-3.21	0.65	0.80	2.42	3.6	0.004	0.67	0.0	0.04	15.35	0.00	1.928	8.78	3.39	6.8	93.2	0.0	-1.19	0.41	0.64	0.80	2.08	12656	1545	8	0	17	0	0	logfile
✔	7P0Z	13153	2024-09-26	2021-07-01	2.43	2.02	2.41	2.2	0.016	0.94	0.0	0.06	14.02	0.01	2.141	7.29	0.00	4.3	95.7	0.0	1.90	0.83	0.86	2.91	2.3	0.003	0.52	0.0	0.03	18.17	0.00	2.559	2.88	2.01	0.7	99.3	0.0	5.25	0.54	0.84	0.87	2.05	12873	1652	7	0	0	0	0	logfile
✔	7Y12	33554	2024-09-24	2022-06-06	3.1	2.87	3.11	3.0	0.003	0.58	1.0	0.04	15.81	0.00	2.086	9.89	0.22	3.4	96.6	0.0	0.86	0.62	0.78	2.84	3.0	0.003	0.55	1.0	0.04	16.52	0.00	2.537	7.33	2.70	3.1	96.9	0.0	0.92	0.31	0.61	0.78	2.68	8501	1110	7	0	3	0	0	logfile
✔	7NJN	12392	2024-09-29	2021-02-17	2.64	2.61	—	2.0	0.004	0.52	0.0	0.04	14.88	0.00	1.931	6.46	0.00	2.3	97.6	0.1	1.48	0.85	0.87	3.94	2.0	0.003	0.53	0.0	0.04	16.07	0.00	1.801	4.91	0.49	2.6	97.3	0.1	1.33	0.90	0.86	0.89	3.91	74548	4927	31	0	11	16	37299	logfile
✔	7PTY	13643	2024-09-26	2021-09-27	4.63	5.10	—	4.5	0.003	0.68	0.0	0.04	13.76	0.00	2.199	25.20	0.00	10.9	89.1	0.0	-1.41	0.88	0.76	—	4.5	0.003	0.66	0.0	0.04	14.12	0.00	2.350	16.25	0.00	8.8	91.2	0.0	-1.04	0.36	0.89	0.77	—	13433	1715	2	0	0	0	0	logfile
✔	6QM8	4591	2024-09-24	2019-02-01	3.3	3.34	—	3.3	0.013	1.90	6.0	0.10	18.73	0.01	2.250	4.70	11.34	7.3	91.7	0.9	-4.29	0.78	0.86	3.07	3.3	0.005	0.77	2.0	0.05	17.66	0.00	2.101	10.25	3.36	2.0	98.0	0.0	0.47	1.26	0.79	0.86	2.63	49124	6350	28	0	0	0	0	logfile
✔	7TYS	26193	2024-09-29	2022-02-14	3.41	3.59	—	3.6	0.004	0.55	0.0	0.04	19.67	0.00	2.235	8.30	2.39	3.7	96.3	0.0	-0.22	0.58	0.81	2.74	3.6	0.004	0.75	1.0	0.05	17.56	0.00	2.215	9.74	4.58	3.5	96.5	0.0	0.34	1.10	0.57	0.80	2.21	21286	2788	11	0	27	0	0	logfile
✔	7E1E	30939	2024-09-24	2021-02-01	3.34	3.41	—	3.4	0.007	0.86	0.0	0.05	17.66	0.01	2.154	11.52	11.79	9.0	90.6	0.4	-3.79	0.53	0.77	2.15	3.3	0.004	0.80	0.0	0.05	16.54	0.01	2.201	8.18	5.09	8.2	91.7	0.1	-2.08	1.51	0.57	0.84	3.10	6489	837	6	0	6	0	0	logfile
✔	7SWL	25474	2024-09-30	2021-11-20	2.88	3.12	—	3.1	0.003	0.51	0.0	0.04	11.23	0.00	1.953	5.64	0.95	3.0	96.9	0.1	0.12	0.71	0.82	3.74	3.1	0.004	0.62	0.0	0.04	15.70	0.00	1.924	7.06	1.26	3.3	96.7	0.1	1.29	0.67	0.71	0.84	2.68	23907	3070	12	0	19	0	0	logfile
✘	7STX	25438	2024-09-24	2021-11-15	3.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8611	1049	5	0	30	0	0	logfile
✔	6QNo	4598	2024-09-25	2019-02-11	4.38	4.65	—	4.4	0.010	1.25	0.0	0.07	11.76	0.01	2.227	12.05	1.65	11.6	88.4	0.0	-3.96	0.80	0.75	—	4.4	0.004	0.78	0.0	0.05	12.30	0.00	2.387	15.55	0.26	9.3	90.7	0.0	-1.70	0.75	0.80	0.75	—	10429	1332	8	0	3	0	0	logfile

• ← previous
• Page 3 of 538
• next →