Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oWE	17235	2024-09-23	2023-04-27	3.75	3.64	3.54	3.8	0.014	2.47	20.0	0.17	22.52	0.03	1.831	11.09	18.33	1.4	98.6	0.0	-2.67	0.41	0.73	5.00	3.7	0.003	0.81	0.0	0.05	18.24	0.00	2.593	13.52	6.33	7.4	92.6	0.0	-3.82	1.48	0.43	0.76	5.27	2940	385	10	0	0	0	0	logfile
✔	8BY8	16324	2024-09-25	2022-12-12	2.5	3.35	2.68	3.1	0.002	0.50	0.0	0.04	13.68	0.00	1.849	5.96	2.50	3.5	96.4	0.1	0.08	0.60	0.19	2.90	3.1	0.003	0.55	0.0	0.04	14.50	0.00	2.338	5.37	1.34	3.8	96.1	0.1	0.33	0.98	0.76	0.73	2.99	38783	2568	2	0	0	0	19223	logfile
✔	8JGB	36229	2024-09-24	2023-05-20	2.84	2.28	2.92	2.0	0.010	1.22	2.0	0.07	15.63	0.01	2.230	7.27	2.89	6.4	93.6	0.0	-2.42	0.83	0.82	3.66	2.0	0.004	0.69	0.0	0.04	16.63	0.00	2.544	4.23	3.67	3.8	96.2	0.0	-0.19	0.53	0.83	0.83	3.65	7796	1062	6	0	0	0	0	logfile
✔	8G5L	29748	2024-09-26	2023-02-13	3.0	3.41	3.03	3.2	0.009	1.04	0.0	0.07	18.59	0.00	2.075	7.07	2.17	7.8	92.2	0.1	-0.22	0.66	0.55	1.10	3.3	0.004	0.83	0.0	0.05	19.32	0.00	2.346	14.36	5.29	9.0	91.0	0.0	-0.56	1.01	0.71	0.68	1.41	12623	1634	5	39	0	0	0	logfile
✔	8J8B	36066	2024-09-26	2023-05-01	2.43	3.24	2.54	3.1	0.002	0.41	0.0	0.04	9.83	0.00	2.210	5.68	0.15	3.4	96.6	0.0	1.04	0.81	0.87	3.99	3.0	0.003	0.54	0.0	0.04	12.78	0.00	2.571	3.53	0.23	4.6	95.4	0.0	0.70	1.23	0.81	0.88	3.79	12330	1518	2	0	0	0	0	logfile
✔	8G5i	29745	2024-09-26	2023-02-13	2.75	3.37	2.79	3.1	0.004	0.80	0.0	0.04	17.63	0.01	2.085	7.69	1.33	6.8	93.1	0.1	-0.24	0.75	0.70	1.80	3.1	0.004	0.79	0.0	0.04	18.56	0.00	2.446	11.42	3.16	7.4	92.6	0.1	-0.46	0.45	0.76	0.79	2.03	14084	1671	5	37	0	0	0	logfile
✔	8QLo	18486	2024-09-24	2023-09-20	2.57	3.41	2.60	3.2	0.009	1.18	1.0	0.08	15.29	0.01	2.209	14.78	2.16	4.5	95.4	0.1	-1.41	0.76	0.78	2.76	3.2	0.004	0.67	0.0	0.04	16.63	0.00	2.412	8.25	3.18	2.6	97.4	0.0	0.49	0.88	0.77	0.80	2.82	7282	892	2	0	0	0	0	logfile
✔	8T7E	41091	2024-09-26	2023-06-20	3.08	3.40	3.07	3.3	0.005	1.09	0.0	0.06	18.22	0.01	2.288	6.80	0.69	7.6	92.3	0.1	-2.94	0.70	0.63	1.75	3.3	0.004	0.77	0.0	0.04	19.58	0.00	2.525	13.20	2.64	8.5	91.4	0.2	-1.33	0.61	0.75	0.76	2.08	14273	1706	5	36	0	0	0	logfile
✔	8KE9	37150	2024-09-23	2023-08-11	3.76	4.61	3.81	3.9	0.003	0.70	0.0	0.08	14.47	0.00	1.931	12.94	7.55	5.7	94.1	0.2	-1.09	0.74	0.78	0.99	3.9	0.004	0.72	0.0	0.04	14.35	0.00	2.493	15.83	2.21	5.7	94.1	0.2	-0.52	1.82	0.76	0.86	1.44	4929	654	3	0	0	0	0	logfile
✔	8T46	41021	2024-09-24	2023-06-08	3.6	3.90	3.43	3.8	0.003	0.63	0.0	0.04	16.79	0.01	2.278	4.95	0.28	2.1	97.8	0.1	1.31	0.66	0.80	1.19	3.8	0.002	0.51	0.0	0.04	17.31	0.00	2.440	4.68	4.76	1.6	98.4	0.0	2.88	1.92	0.69	0.82	1.22	7885	1113	2	0	0	0	0	logfile
✔	8RML	19363	2024-09-30	2024-01-08	3.84	4.20	4.01	4.1	0.004	0.60	0.0	0.04	14.77	0.00	2.198	12.94	0.46	3.7	96.3	0.0	0.77	0.65	0.79	1.28	4.1	0.002	0.62	0.0	0.04	15.69	0.00	2.389	8.02	2.78	3.0	97.0	0.0	1.94	0.50	0.64	0.76	1.08	24454	3088	13	0	0	0	0	logfile
✔	8HX1	35071	2024-09-27	2023-01-03	3.29	3.53	3.34	3.5	0.005	0.63	0.0	0.04	13.93	0.00	2.182	3.33	0.00	1.2	98.8	0.0	3.33	0.75	0.83	2.28	3.5	0.006	0.58	0.0	0.04	15.82	0.00	2.506	2.72	1.76	2.3	97.7	0.0	2.73	0.26	0.69	0.83	1.81	14919	1926	12	0	0	0	0	logfile
✔	8HRX	34981	2024-09-23	2022-12-16	2.89	3.36	2.88	3.4	0.003	0.70	0.0	0.05	16.54	0.00	1.709	10.40	3.52	6.6	93.1	0.3	0.01	0.59	0.86	3.16	3.4	0.003	0.70	0.0	0.04	16.92	0.00	2.465	7.74	3.23	6.9	93.1	0.0	-0.16	0.32	0.59	0.86	2.63	6013	780	4	0	0	0	0	logfile
✔	8JHi	36266	2024-09-24	2023-05-23	3.2	3.84	3.46	3.8	0.004	0.71	0.0	0.05	14.30	0.01	2.158	7.15	0.00	5.4	94.6	0.0	-0.87	0.65	0.79	1.91	3.8	0.003	0.71	0.0	0.04	16.02	0.00	2.360	10.03	2.91	5.6	94.4	0.0	-0.21	0.96	0.63	0.81	1.87	8562	1077	5	0	0	0	0	logfile
✔	8G5o	29751	2024-09-26	2023-02-13	2.61	3.53	2.82	3.3	0.005	0.84	0.0	0.04	16.53	0.01	2.003	5.69	1.72	5.6	94.4	0.0	0.26	0.66	0.53	1.42	3.3	0.004	0.74	0.0	0.04	17.47	0.01	2.168	11.90	4.76	8.1	91.9	0.0	-0.39	0.95	0.73	0.72	1.38	11952	1716	5	38	0	0	0	logfile
✔	8XW4	38730	2024-09-23	2024-01-15	3.84	4.08	3.72	4.0	0.006	0.87	0.0	0.05	14.64	0.00	1.751	14.90	0.00	10.8	89.2	0.0	-0.84	0.54	0.78	1.09	4.1	0.003	0.78	0.0	0.04	16.95	0.00	2.517	10.76	3.81	8.0	92.0	0.0	0.17	0.57	0.54	0.77	0.82	5027	619	1	0	0	0	0	logfile
✔	8HWQ	35062	2024-09-28	2023-01-02	3.58	3.88	3.67	3.8	0.003	0.68	0.0	0.04	17.35	0.00	2.253	8.78	0.21	6.4	93.4	0.3	-1.29	0.60	0.75	1.95	3.8	0.005	0.74	0.0	0.04	18.00	0.00	2.561	9.87	2.59	6.7	93.3	0.0	-1.51	1.27	0.61	0.77	1.91	20783	2576	7	0	0	0	0	logfile
✔	8J9o	36112	2024-09-24	2023-05-04	3.4	2.47	3.47	2.1	0.003	0.75	0.0	0.04	13.17	0.01	2.192	7.33	0.00	5.6	94.4	0.0	-1.72	0.73	0.72	2.33	2.1	0.003	0.68	0.0	0.04	15.85	0.01	2.109	9.27	3.97	6.2	93.8	0.0	-0.75	0.95	0.74	0.75	2.00	7441	999	4	0	0	0	0	logfile
✔	8K98	36980	2024-09-26	2023-07-31	2.9	3.17	3.02	3.2	0.003	0.58	0.0	0.04	19.22	0.00	2.179	9.35	3.15	6.0	93.8	0.2	-0.15	0.63	0.75	1.48	3.2	0.005	0.67	0.0	0.05	19.43	0.00	2.397	9.27	3.83	7.2	92.7	0.1	-0.50	0.91	0.64	0.76	1.54	13415	1619	4	0	0	0	0	logfile
✔	8WYi	37929	2024-09-23	2023-10-31	3.9	4.16	3.88	4.1	0.004	1.06	0.0	0.04	18.20	0.01	2.068	17.74	1.91	11.2	87.2	1.6	-1.04	0.49	0.67	0.70	4.1	0.003	0.84	0.0	0.04	19.03	0.00	2.361	10.47	6.88	11.0	88.1	0.9	-0.27	1.22	0.61	0.76	0.82	4659	589	8	0	0	0	0	logfile

• ← previous
• Page 3 of 538
• next →