Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8i6M	35200	2024-09-30	2023-01-28	2.59	2.77	2.62	2.7	0.007	0.84	18.0	0.07	16.14	0.01	2.165	9.83	0.80	8.2	91.6	0.2	-1.29	0.72	0.75	3.87	2.7	0.003	0.65	0.0	0.05	16.92	0.00	1.973	7.12	1.92	7.4	92.4	0.2	-0.70	3.08	0.77	0.85	3.37	25464	3168	12	0	18	0	0	logfile
✔	8SMX	40605	2024-09-28	2023-04-26	3.2	3.37	3.21	3.3	0.003	0.57	0.0	0.04	26.38	0.00	1.330	4.49	0.00	1.9	98.1	0.0	1.43	0.74	0.85	2.99	3.3	0.004	0.58	0.0	0.04	26.66	0.00	2.150	4.02	0.93	2.2	97.8	0.0	1.50	0.18	0.73	0.87	2.81	13998	1000	13	294	2	0	0	logfile
✔	8JGB	36229	2024-09-24	2023-05-20	2.84	2.28	2.92	2.0	0.010	1.22	2.0	0.07	15.63	0.01	2.230	7.27	2.89	6.4	93.6	0.0	-2.42	0.83	0.82	3.66	2.0	0.004	0.69	0.0	0.04	16.63	0.00	2.544	4.23	3.67	3.8	96.2	0.0	-0.19	0.53	0.83	0.83	3.65	7796	1062	6	0	0	0	0	logfile
✔	8G5L	29748	2024-09-26	2023-02-13	3.0	3.41	3.03	3.2	0.009	1.04	0.0	0.07	18.59	0.00	2.075	7.07	2.17	7.8	92.2	0.1	-0.22	0.66	0.55	1.10	3.3	0.004	0.83	0.0	0.05	19.32	0.00	2.346	14.36	5.29	9.0	91.0	0.0	-0.56	1.01	0.71	0.68	1.41	12623	1634	5	39	0	0	0	logfile
✔	8J8B	36066	2024-09-26	2023-05-01	2.43	3.24	2.54	3.1	0.002	0.41	0.0	0.04	9.83	0.00	2.210	5.68	0.15	3.4	96.6	0.0	1.04	0.81	0.87	3.99	3.0	0.003	0.54	0.0	0.04	12.78	0.00	2.571	3.53	0.23	4.6	95.4	0.0	0.70	1.23	0.81	0.88	3.79	12330	1518	2	0	0	0	0	logfile
✘	8TVS	41650	2024-09-25	2023-08-18	4.4	4.59	4.48	4.1	0.004	0.77	0.0	0.05	15.19	0.00	1.713	10.23	0.00	4.5	95.5	0.1	-0.62	0.83	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	56913	3697	22	104	443	0	24971	logfile
✔	8C4C	16424	2024-09-25	2023-01-03	2.7	1.97	2.55	2.5	0.004	0.59	0.0	0.04	15.85	0.00	1.875	3.52	0.89	2.3	97.6	0.1	1.30	0.63	0.80	4.55	2.3	0.005	0.68	0.0	0.04	17.05	0.00	1.744	3.79	2.21	3.3	96.6	0.1	0.63	0.95	0.69	0.83	4.33	56164	3584	20	0	24	0	27864	logfile
✔	9BP6	44762	2024-09-26	2024-05-07	3.1	3.37	3.02	3.3	0.005	0.88	0.0	0.05	16.03	0.01	1.963	3.03	0.14	2.7	97.3	0.0	0.29	0.66	0.75	3.00	3.3	0.003	0.58	0.0	0.04	17.08	0.00	1.926	5.58	2.75	2.2	97.8	0.0	0.64	0.67	0.74	0.83	3.09	13631	1732	8	0	8	0	0	logfile
✔	8iFK	35419	2024-09-24	2023-02-18	2.54	2.85	2.66	2.9	0.004	0.73	0.0	0.05	20.29	0.01	1.744	18.46	4.35	3.4	96.6	0.0	-0.23	0.69	0.81	3.19	2.9	0.004	0.60	0.0	0.04	20.18	0.00	1.981	12.28	2.04	3.5	96.5	0.0	-0.12	0.24	0.65	0.79	3.28	7632	823	5	41	1	0	0	logfile
✔	8T46	41021	2024-09-24	2023-06-08	3.6	3.90	3.43	3.8	0.003	0.63	0.0	0.04	16.79	0.01	2.278	4.95	0.28	2.1	97.8	0.1	1.31	0.66	0.80	1.19	3.8	0.002	0.51	0.0	0.04	17.31	0.00	2.440	4.68	4.76	1.6	98.4	0.0	2.88	1.92	0.69	0.82	1.22	7885	1113	2	0	0	0	0	logfile
✔	9FGS	50420	2024-09-23	2024-05-25	4.0	4.27	4.01	4.2	0.003	0.66	0.0	0.04	13.38	0.00	2.251	10.57	0.00	8.7	91.3	0.0	-1.99	0.78	0.80	—	4.2	0.003	0.66	0.0	0.04	15.53	0.00	2.415	10.57	2.63	8.7	91.1	0.2	-1.64	0.97	0.78	0.81	—	3187	412	3	0	1	0	0	logfile
✔	8iRL	35678	2024-09-24	2023-03-19	2.7	2.78	2.75	2.9	0.007	0.68	0.0	0.05	12.79	0.01	2.014	3.36	0.00	2.4	97.6	0.0	0.48	0.67	0.88	3.54	2.9	0.003	0.55	0.0	0.04	14.58	0.00	2.622	2.14	0.82	2.7	97.3	0.0	2.09	0.34	0.66	0.89	2.42	8108	1080	4	0	4	0	0	logfile
✔	8HRX	34981	2024-09-23	2022-12-16	2.89	3.36	2.88	3.4	0.003	0.70	0.0	0.05	16.54	0.00	1.709	10.40	3.52	6.6	93.1	0.3	0.01	0.59	0.86	3.16	3.4	0.003	0.70	0.0	0.04	16.92	0.00	2.465	7.74	3.23	6.9	93.1	0.0	-0.16	0.32	0.59	0.86	2.63	6013	780	4	0	0	0	0	logfile
✔	8X54	38061	2024-09-25	2023-11-16	2.9	3.26	3.00	3.2	0.010	1.15	6.0	0.07	14.62	0.01	1.597	6.23	1.05	4.6	95.4	0.0	-3.47	0.40	0.59	2.75	3.2	0.003	0.62	0.0	0.04	14.49	0.00	2.407	4.65	2.01	2.7	97.2	0.1	0.94	1.28	0.61	0.82	2.69	11009	1337	14	0	27	0	0	logfile
✔	8SN0	40608	2024-09-26	2023-04-26	3.2	3.37	3.21	3.4	0.004	0.56	0.0	0.04	26.42	0.00	1.331	5.43	0.00	2.4	97.6	0.0	1.04	0.75	0.85	2.59	3.4	0.005	0.58	0.0	0.04	26.90	0.00	2.118	4.10	1.17	2.6	97.4	0.0	1.55	0.21	0.74	0.87	2.39	13989	1000	13	294	2	0	0	logfile
✔	8XW4	38730	2024-09-23	2024-01-15	3.84	4.08	3.72	4.0	0.006	0.87	0.0	0.05	14.64	0.00	1.751	14.90	0.00	10.8	89.2	0.0	-0.84	0.54	0.78	1.09	4.1	0.003	0.78	0.0	0.04	16.95	0.00	2.517	10.76	3.81	8.0	92.0	0.0	0.17	0.57	0.54	0.77	0.82	5027	619	1	0	0	0	0	logfile
✔	8HWQ	35062	2024-09-28	2023-01-02	3.58	3.88	3.67	3.8	0.003	0.68	0.0	0.04	17.35	0.00	2.253	8.78	0.21	6.4	93.4	0.3	-1.29	0.60	0.75	1.95	3.8	0.005	0.74	0.0	0.04	18.00	0.00	2.561	9.87	2.59	6.7	93.3	0.0	-1.51	1.27	0.61	0.77	1.91	20783	2576	7	0	0	0	0	logfile
✔	8UZ1	42830	2024-09-24	2023-11-14	3.6	3.84	3.63	3.9	0.012	1.91	30.0	0.11	15.16	0.01	1.829	0.04	1.34	4.9	94.9	0.2	-1.77	0.76	0.83	3.08	3.9	0.004	0.65	0.0	0.04	15.74	0.00	1.197	4.34	1.63	3.7	96.3	0.0	-0.16	1.52	0.70	0.81	1.95	52410	3348	18	0	27	0	25941	logfile
✘	8TUG	41623	2024-09-27	2023-08-16	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65461	3748	22	103	512	0	31025	logfile
✔	8GLJ	40195	2024-09-29	2023-03-22	3.2	3.37	3.06	3.2	0.005	0.58	0.0	0.05	13.07	0.00	2.097	7.75	3.63	5.7	94.3	0.0	-1.33	0.78	0.84	4.41	3.2	0.004	0.61	0.0	0.05	13.79	0.00	2.419	5.95	1.83	5.7	94.3	0.0	-0.99	2.53	0.75	0.89	3.88	21891	2761	5	0	1	0	0	logfile

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