Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SF8	25077	2024-09-24	2021-10-03	2.7	2.25	—	2.1	0.005	0.74	0.0	0.05	13.03	0.00	2.270	4.24	0.14	4.7	95.3	0.0	0.40	0.80	0.80	3.25	2.1	0.005	0.61	0.0	0.04	15.80	0.00	2.558	3.11	1.67	4.7	95.3	0.0	0.95	1.00	0.82	0.84	3.53	6661	860	4	0	0	0	0	logfile
✔	6MG8	9111	2024-09-24	2018-09-13	3.6	3.81	3.42	3.7	0.006	0.75	0.0	0.06	12.86	0.00	2.157	8.79	0.00	8.0	92.0	0.0	-3.49	0.71	0.81	2.44	3.7	0.002	0.65	0.0	0.04	14.30	0.00	2.583	8.56	3.33	5.1	94.9	0.0	0.29	0.48	0.71	0.80	2.11	7034	985	2	0	4	0	0	logfile
✔	8HHM	34804	2024-09-23	2022-11-16	3.08	3.57	3.10	3.3	0.005	0.53	0.0	0.04	20.70	0.00	2.106	6.39	3.34	2.9	97.1	0.0	1.27	0.81	0.82	2.37	3.4	0.003	0.57	0.0	0.04	21.33	0.00	2.083	7.45	1.67	1.4	98.6	0.0	2.17	1.78	0.82	0.82	2.32	5558	516	7	72	2	0	0	logfile
✔	7QEV	13942	2024-09-23	2021-12-03	2.9	3.46	—	3.1	0.009	0.86	0.0	0.05	13.68	0.00	2.164	5.92	0.00	4.3	95.7	0.0	-0.15	0.79	0.86	3.19	3.1	0.003	0.70	0.0	0.04	16.23	0.00	2.485	5.92	0.58	4.0	96.0	0.0	1.96	1.68	0.79	0.86	2.33	3204	383	6	0	8	8	0	logfile
✔	7QPG	14120	2024-09-25	2022-01-04	3.9	4.08	—	2.8	0.002	0.54	0.0	0.04	10.05	0.00	2.093	6.89	0.00	2.7	97.3	0.0	0.34	0.78	0.58	0.22	2.4	0.002	0.67	0.0	0.04	12.91	0.00	2.430	8.41	0.94	2.6	97.4	0.0	1.16	0.79	0.86	0.71	0.32	57164	7156	6	0	0	0	0	logfile
✘	7C8D	30305	2024-09-25	2020-05-29	3.0	2.79	—	2.8	0.003	0.53	0.0	0.04	17.37	0.00	1.998	9.03	6.05	3.6	96.4	0.0	-2.80	0.71	0.76	3.07	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6359	792	3	0	1	0	0	logfile
✔	6X4S	22042	2024-09-23	2020-05-22	3.5	3.84	—	3.9	0.007	0.77	0.0	0.05	15.59	0.00	2.077	11.03	0.97	1.9	98.1	0.0	1.34	0.72	0.75	1.39	3.9	0.003	0.71	0.0	0.04	17.98	0.00	2.284	11.69	4.27	1.5	98.5	0.0	4.29	1.52	0.72	0.76	1.27	5373	706	9	0	1	0	0	logfile
✔	7B03	11955	2024-09-24	2020-11-18	2.93	2.97	—	2.9	0.005	0.90	0.0	0.04	13.22	0.00	2.190	7.91	0.00	1.9	98.1	0.0	1.34	0.69	0.81	1.85	2.9	0.003	0.53	0.0	0.04	15.34	0.00	2.525	5.31	3.50	1.4	98.6	0.0	2.39	0.36	0.67	0.83	1.45	8670	1085	10	0	5	0	0	logfile
✔	7NAK	24272	2024-09-28	2021-06-21	2.9	3.09	3.03	3.1	0.008	1.03	0.0	0.05	19.83	0.00	2.211	5.96	0.00	5.6	94.4	0.0	-0.76	0.68	0.73	2.90	3.1	0.004	0.89	1.0	0.04	18.09	0.00	2.053	6.02	1.10	3.2	96.8	0.0	0.58	0.51	0.65	0.73	2.38	18303	1120	16	0	8	0	8967	logfile
✔	7F6G	31479	2024-09-24	2021-06-25	2.9	3.07	—	3.0	0.009	0.98	0.0	0.08	13.90	0.00	2.197	4.74	0.65	3.0	97.0	0.0	-0.57	0.67	0.78	2.90	3.0	0.002	0.58	0.0	0.04	15.80	0.00	2.498	4.97	2.48	2.3	97.7	0.0	1.02	1.11	0.65	0.81	1.99	8697	1061	6	0	7	0	0	logfile
✔	3JB7	6404	2024-09-27	2015-08-03	4.0	4.13	—	4.1	0.007	0.76	3.0	0.05	11.60	0.00	0.793	10.58	1.13	3.9	95.9	0.2	-2.17	0.76	0.85	—	4.1	0.003	0.67	0.0	0.04	15.90	0.00	2.468	8.41	3.05	2.9	97.0	0.1	0.46	0.82	0.78	0.85	—	14176	1733	8	11	3	0	0	logfile
✔	7MK2	23884	2024-09-23	2021-04-21	3.8	3.60	3.84	3.6	0.004	0.69	0.0	0.04	14.23	0.00	2.228	8.87	0.00	7.7	92.3	0.0	-1.60	0.63	0.77	0.81	3.6	0.003	0.67	0.0	0.04	16.25	0.00	2.511	7.19	2.79	5.4	94.6	0.0	-0.95	1.43	0.63	0.77	0.77	5333	708	4	0	2	0	0	logfile
✔	6SHS	10204	2024-09-24	2019-08-08	4.4	4.36	—	4.3	0.009	1.02	0.0	0.06	12.04	0.00	2.341	25.68	0.00	21.1	78.9	0.0	-5.87	0.69	0.62	—	4.4	0.002	0.64	0.0	0.05	12.68	0.00	2.416	3.63	0.00	15.4	84.6	0.0	-5.52	1.68	0.73	0.71	—	7068	480	12	0	0	0	3408	logfile
✔	7QEo	13935	2024-09-23	2021-12-03	2.9	3.47	—	3.1	0.007	0.78	0.0	0.04	13.54	0.00	2.106	5.39	0.00	3.9	96.1	0.0	0.61	0.78	0.88	3.13	3.1	0.003	0.66	0.0	0.04	15.39	0.00	2.548	5.06	1.52	2.8	97.2	0.0	2.55	0.48	0.77	0.87	2.46	3056	368	6	0	6	4	0	logfile
✔	7MQD	23943	2024-09-28	2021-05-05	3.25	3.21	3.21	3.3	0.003	0.62	0.0	0.05	14.59	0.00	2.456	1.98	0.00	1.0	99.0	0.0	1.04	0.75	0.83	3.89	3.3	0.004	0.51	0.0	0.04	15.71	0.00	2.589	2.33	0.76	1.0	99.0	0.0	1.40	0.30	0.77	0.87	4.39	11960	1592	16	16	0	0	0	logfile
✔	7SRS	25403	2024-09-25	2021-11-08	3.3	2.62	—	3.4	0.005	0.66	0.0	0.05	12.94	0.00	2.242	4.06	0.23	3.4	96.6	0.0	0.87	0.85	0.84	3.41	3.3	0.003	0.62	0.0	0.04	14.53	0.00	2.515	3.34	2.42	3.7	96.2	0.1	0.91	0.35	0.85	0.86	3.07	8361	1103	7	0	2	0	0	logfile
✔	7WD8	32434	2024-09-23	2021-12-21	4.3	3.48	—	3.5	0.002	0.51	0.0	0.04	6.43	0.00	2.246	8.80	0.00	4.1	95.7	0.2	-0.96	0.60	0.61	—	3.5	0.003	0.71	0.0	0.04	12.43	0.00	2.558	10.69	0.00	4.5	95.3	0.2	-0.06	1.60	0.63	0.66	—	4029	524	4	0	0	0	0	logfile
✔	6ZQJ	11366	2024-09-27	2020-07-09	4.2	3.97	4.23	4.3	0.002	0.55	0.0	0.04	12.26	0.00	2.286	6.20	1.55	2.9	97.0	0.1	-2.13	0.67	0.75	—	4.2	0.004	0.85	0.0	0.05	13.70	0.00	2.148	9.08	0.06	4.7	95.3	0.0	-0.90	2.01	0.69	0.79	—	15096	1965	12	0	3	0	0	logfile
✔	7CXR	30495	2024-09-23	2020-09-02	3.4	3.32	3.43	3.7	0.007	0.87	1.0	0.06	16.56	0.00	2.199	12.99	3.39	6.6	93.1	0.3	-2.27	0.52	0.54	1.33	3.6	0.004	0.74	0.0	0.04	18.31	0.00	2.557	9.89	3.21	3.3	96.7	0.0	1.86	1.52	0.59	0.62	1.41	5168	614	2	0	0	0	0	logfile
✔	7CKL	30387	2024-09-26	2020-07-17	3.88	4.01	—	3.9	0.002	0.56	0.0	0.04	13.09	0.00	2.244	10.45	0.00	6.8	93.1	0.1	-2.17	0.73	0.75	1.49	3.9	0.003	0.74	0.0	0.04	15.77	0.00	2.162	9.18	1.73	6.6	93.4	0.0	0.31	0.65	0.73	0.76	1.53	11521	1464	4	0	3	0	0	logfile

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