Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Uo2	42425	2024-09-24	2023-10-19	3.6	4.02	3.83	4.0	0.005	0.76	0.0	0.05	13.65	0.00	2.237	5.87	0.40	1.7	98.3	0.0	1.29	0.63	0.80	3.52	4.0	0.002	0.46	0.0	0.04	14.64	0.00	2.501	3.02	1.00	1.5	98.5	0.0	1.95	0.93	0.64	0.81	3.01	6504	956	6	0	2	0	0	logfile
✔	8PT7	17869	2024-09-28	2023-07-13	2.8	2.94	2.75	2.9	0.002	0.44	0.0	0.03	18.02	0.00	1.778	3.66	1.29	2.4	97.5	0.1	1.49	0.79	0.90	3.63	2.8	0.003	0.46	0.0	0.04	17.78	0.00	1.851	2.31	1.40	2.4	97.6	0.0	1.67	0.32	0.78	0.90	3.60	17722	1071	7	29	2	0	8690	logfile
✔	8Y9B	39072	2024-09-26	2024-02-06	3.2	3.27	3.08	3.3	0.004	0.54	0.0	0.05	13.74	0.00	2.077	5.44	0.00	3.3	96.7	0.0	0.47	0.71	0.82	3.00	3.3	0.002	0.46	0.0	0.04	15.62	0.00	2.135	3.70	0.99	2.7	97.2	0.1	1.40	0.38	0.72	0.85	2.57	13380	1672	3	0	1	0	0	logfile
✔	8EKS	28212	2024-09-28	2022-09-21	3.1	3.47	3.18	3.5	0.003	0.62	0.0	0.04	13.55	0.00	2.215	3.64	0.00	1.9	98.1	0.0	-2.29	0.72	0.84	3.39	3.5	0.002	0.46	0.0	0.03	14.92	0.00	2.629	4.40	0.91	1.8	98.2	0.0	2.23	0.37	0.65	0.82	3.14	20484	2504	8	0	4	0	0	logfile
✔	8G4C	29716	2024-09-27	2023-02-09	3.1	3.36	3.19	3.4	0.004	0.59	0.0	0.04	16.59	0.00	2.236	6.06	0.25	4.4	95.6	0.0	0.73	0.62	0.77	2.20	3.4	0.002	0.46	0.0	0.04	17.05	0.00	2.550	4.19	1.34	3.8	96.1	0.1	1.32	0.26	0.65	0.84	2.04	14503	1803	8	0	3	0	0	logfile
✔	7Z0Z	14435	2024-09-24	2022-02-24	2.68	2.92	2.79	2.8	0.006	0.72	6.0	0.05	14.67	0.00	2.092	7.37	0.54	1.9	98.0	0.2	0.45	0.74	0.86	4.83	2.8	0.002	0.46	0.0	0.04	16.61	0.00	2.559	4.70	1.03	2.0	97.9	0.2	1.36	0.93	0.76	0.89	4.16	29466	3510	6	0	0	0	0	logfile
✔	7TiK	25912	2024-09-23	2022-01-13	2.4	2.38	—	2.0	0.007	0.49	0.0	0.04	16.31	0.00	2.218	7.94	0.00	4.6	95.4	0.0	1.31	0.77	0.80	1.31	2.0	0.003	0.46	0.0	0.04	16.50	0.00	2.625	6.00	1.01	0.6	99.4	0.0	5.69	0.38	0.78	0.80	1.44	2565	339	6	0	0	0	0	logfile
✔	8iRM	35679	2024-09-24	2023-03-19	2.6	2.91	2.63	2.9	0.007	0.68	0.0	0.04	13.13	0.00	2.101	7.26	0.00	3.6	96.4	0.0	0.86	0.67	0.89	4.19	2.8	0.002	0.46	0.0	0.04	14.52	0.00	2.441	21.47	1.52	3.1	96.9	0.0	2.58	1.25	0.64	0.89	3.70	8138	1080	8	2	4	2	8	logfile
✔	7YNR	33969	2024-09-23	2022-07-31	2.9	2.79	1.55	3.2	0.003	0.46	0.0	0.05	10.05	0.00	2.424	7.49	0.00	1.7	98.3	0.0	-3.30	0.41	0.87	6.76	3.2	0.002	0.46	0.0	0.05	12.90	0.00	2.622	3.65	0.00	4.0	96.0	0.0	-1.89	0.22	0.42	0.88	5.75	2526	366	6	0	0	0	0	logfile
✔	8GG0	29990	2024-09-24	2023-03-08	2.9	3.26	3.07	3.2	0.003	0.51	0.0	0.04	13.40	0.00	2.215	2.06	0.00	1.7	98.3	0.0	0.54	0.55	0.82	4.19	3.2	0.002	0.46	0.0	0.04	15.23	0.00	2.503	2.06	1.06	1.2	98.8	0.0	1.77	0.30	0.62	0.86	3.38	6745	897	6	0	2	5	0	logfile
✔	7SQV	25396	2024-09-23	2021-11-06	2.3	2.95	2.29	2.8	0.001	0.38	0.0	0.04	16.08	0.00	2.314	1.47	0.63	0.7	99.3	0.0	1.86	0.76	0.88	3.59	2.8	0.003	0.46	0.0	0.04	16.27	0.00	2.607	0.79	1.46	1.1	98.9	0.0	1.77	1.99	0.77	0.90	3.57	4471	573	5	0	0	7	0	logfile
✔	8PSS	17861	2024-09-28	2023-07-13	2.83	2.94	2.75	2.9	0.002	0.44	0.0	0.03	18.02	0.00	1.778	3.66	1.29	2.4	97.5	0.1	1.49	0.79	0.90	3.63	2.8	0.003	0.46	0.0	0.04	17.78	0.00	1.853	2.36	1.29	2.4	97.6	0.0	1.68	0.32	0.78	0.90	3.57	17722	1071	7	29	2	0	8690	logfile
✔	8R8K	19002	2024-09-23	2023-11-29	3.41	3.66	3.37	3.7	0.003	0.49	0.0	0.04	15.09	0.00	2.145	4.83	0.23	2.6	97.4	0.0	-0.18	0.58	0.84	2.55	3.7	0.002	0.46	0.0	0.04	15.42	0.00	2.633	4.06	2.50	3.5	96.5	0.0	-0.17	0.31	0.59	0.85	2.65	4005	515	3	0	0	0	0	logfile
✔	7STo	25435	2024-09-30	2021-11-14	3.15	3.45	—	3.3	0.007	0.88	0.0	0.04	11.85	0.00	2.289	1.13	0.15	2.3	97.7	0.0	1.91	0.68	0.82	3.05	3.3	0.003	0.46	0.0	0.04	13.55	0.00	2.347	1.99	0.91	3.3	96.6	0.1	1.93	1.23	0.72	0.87	2.62	25210	1580	4	0	10	0	12268	logfile
✔	8A01	15044	2024-09-23	2022-05-26	3.2	3.25	3.20	3.2	0.002	0.44	0.0	0.05	14.81	0.00	2.289	4.13	0.00	2.0	98.0	0.0	0.02	0.48	0.86	2.87	3.2	0.002	0.46	0.0	0.05	16.79	0.00	2.594	2.87	1.59	2.4	97.6	0.0	-0.19	0.24	0.47	0.87	2.60	5511	717	3	0	0	0	0	logfile
✔	8TZ8	41737	2024-09-30	2023-08-26	3.19	3.59	3.39	3.6	0.010	0.62	0.0	0.04	13.77	0.00	1.931	3.87	0.00	1.7	98.3	0.0	2.71	0.58	0.78	2.76	3.6	0.002	0.46	0.0	0.03	15.00	0.00	2.344	3.50	0.88	2.2	97.8	0.0	3.62	1.33	0.55	0.78	1.87	24426	1599	6	0	5	0	12101	logfile
✔	8iXL	35795	2024-09-25	2023-04-01	3.5	3.61	3.45	3.6	0.012	1.48	0.0	0.10	11.65	0.00	2.568	2.07	0.00	0.4	99.6	0.0	2.40	0.71	0.84	1.08	3.6	0.003	0.46	0.0	0.04	15.97	0.00	2.582	5.21	2.81	0.5	99.5	0.0	5.61	1.12	0.68	0.84	1.00	10970	1455	35	0	0	0	0	logfile
✔	7T4F	25675	2024-09-24	2021-12-09	2.7	3.13	2.69	3.1	0.004	0.70	0.0	0.05	14.61	0.00	2.228	4.75	2.44	0.3	99.7	0.0	0.54	0.33	0.71	4.04	3.1	0.002	0.46	0.0	0.04	15.18	0.00	2.635	3.35	1.41	0.5	99.5	0.0	0.42	0.29	0.34	0.80	4.47	7224	980	4	0	0	0	0	logfile
✔	8YLT	39390	2024-09-27	2024-03-06	3.09	3.71	3.14	3.4	0.007	0.89	0.0	0.04	15.91	0.00	2.215	4.00	0.90	2.7	97.3	0.0	0.18	0.76	0.74	2.29	3.4	0.003	0.47	0.0	0.04	16.04	0.00	2.143	3.14	0.77	3.0	97.0	0.0	1.37	0.50	0.77	0.76	2.02	65834	3978	8	0	4	0	32508	logfile
✔	8WP1	37707	2024-09-24	2023-10-08	3.15	3.42	3.18	3.4	0.004	0.59	1.0	0.04	16.53	0.00	2.208	14.72	0.37	5.3	94.7	0.0	0.33	0.67	0.87	2.24	3.4	0.003	0.47	0.0	0.04	17.13	0.00	2.359	15.20	3.73	6.1	93.9	0.0	0.91	0.24	0.65	0.87	2.36	7328	922	5	0	1	1	2	logfile

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