Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VVL	32143	2024-09-24	2021-11-06	2.8	2.24	2.76	2.9	0.014	1.69	0.0	0.09	17.70	0.00	2.204	4.33	7.24	4.3	95.7	0.1	-0.88	0.59	0.76	3.21	3.0	0.002	0.55	0.0	0.04	18.02	0.00	2.576	4.86	3.67	3.0	97.0	0.0	0.93	0.47	0.62	0.77	2.40	8725	1126	7	0	0	1	0	logfile
✔	7R9M	24329	2024-09-24	2021-06-29	4.0	4.58	—	3.9	0.002	0.38	0.0	0.04	4.68	0.00	2.214	3.88	0.00	8.3	90.9	0.8	-4.83	0.85	0.77	—	3.9	0.002	0.54	0.0	0.04	9.17	0.00	2.482	4.79	0.25	2.2	97.8	0.0	-0.26	1.71	0.86	0.79	—	7727	505	1	0	0	0	3939	logfile
✔	8oiF	16891	2024-09-24	2023-03-22	3.5	3.41	3.30	3.4	0.003	0.59	0.0	0.04	13.83	0.01	2.246	6.05	0.00	6.8	93.2	0.0	-0.42	0.75	0.81	3.19	3.3	0.002	0.58	0.0	0.04	14.24	0.00	1.174	5.11	1.82	5.4	94.6	0.0	0.04	0.85	0.75	0.81	2.57	6589	934	4	0	1	0	0	logfile
✔	7YAi	33713	2024-09-24	2022-06-28	3.14	3.36	3.24	3.3	0.004	0.78	0.0	0.05	16.33	0.00	2.075	7.62	0.35	1.8	98.2	0.0	0.56	0.67	0.75	1.64	3.3	0.002	0.58	0.0	0.04	16.28	0.00	2.348	8.78	2.95	1.6	98.4	0.0	1.58	1.03	0.64	0.76	1.56	7678	1001	3	0	2	0	0	logfile
✔	7EG1	31104	2024-09-27	2021-03-23	3.2	3.30	—	3.3	0.006	0.65	0.0	0.04	14.26	0.01	2.026	16.04	0.36	11.9	88.0	0.1	-5.05	0.81	0.86	3.43	3.3	0.002	0.59	0.0	0.04	15.47	0.00	2.064	3.82	1.32	9.6	90.4	0.0	0.11	1.20	0.81	0.87	2.81	15260	1878	8	0	8	0	0	logfile
✔	6KA4	9954	2024-09-27	2019-06-20	3.4	3.49	—	3.4	0.006	0.82	0.0	0.05	13.68	0.01	2.076	15.29	0.00	5.0	95.0	0.0	-0.10	0.77	0.83	1.80	3.4	0.002	0.57	0.0	0.04	15.85	0.00	2.563	5.46	1.69	3.0	97.0	0.0	1.11	0.44	0.79	0.85	1.06	17500	2136	4	0	0	0	0	logfile
✔	6UWN	20925	2024-09-26	2019-11-05	3.5	3.59	—	3.6	0.007	0.73	0.0	0.05	13.75	0.00	2.285	3.49	0.15	3.4	96.6	0.0	-4.35	0.67	0.83	2.62	3.6	0.002	0.56	0.0	0.05	15.95	0.00	2.297	5.27	1.45	2.3	97.7	0.0	0.18	1.22	0.66	0.81	1.78	13258	1776	20	0	24	4	0	logfile
✔	6XMX	22265	2024-09-27	2020-07-01	3.7	3.86	3.66	3.8	0.012	1.12	0.0	0.06	15.97	0.01	2.154	7.37	0.89	1.7	98.3	0.0	-1.34	0.61	0.54	1.48	3.8	0.002	0.57	0.0	0.04	17.09	0.00	2.278	12.05	1.12	2.4	97.6	0.0	2.21	1.30	0.63	0.60	0.72	16014	976	16	0	8	0	7942	logfile
✔	6N7T	0363	2024-09-26	2018-11-28	3.9	4.01	—	3.9	0.006	0.95	0.0	0.06	15.07	0.00	1.883	3.57	0.81	5.6	94.3	0.1	-3.82	0.76	0.72	1.04	3.9	0.002	0.62	0.0	0.04	16.87	0.00	1.943	7.03	1.40	3.5	96.5	0.0	-0.44	0.78	0.77	0.74	0.81	12890	1610	12	16	10	0	0	logfile
✔	6WUT	21918	2024-09-24	2020-05-05	3.0	3.08	—	3.1	0.008	0.89	0.0	0.05	13.93	0.01	2.253	3.66	5.79	6.2	93.8	0.0	-4.07	0.70	0.82	3.81	3.1	0.002	0.58	0.0	0.04	15.46	0.00	2.447	3.90	2.84	3.9	96.1	0.0	0.12	4.27	0.68	0.83	3.07	8218	1087	3	0	0	0	0	logfile
✔	6MG8	9111	2024-09-24	2018-09-13	3.6	3.81	3.42	3.7	0.006	0.75	0.0	0.06	12.86	0.00	2.157	8.79	0.00	8.0	92.0	0.0	-3.49	0.71	0.81	2.44	3.7	0.002	0.65	0.0	0.04	14.30	0.00	2.583	8.56	3.33	5.1	94.9	0.0	0.29	0.48	0.71	0.80	2.11	7034	985	2	0	4	0	0	logfile
✔	5VZL	8749	2024-09-26	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	17.27	0.01	2.216	7.72	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	17.0	0.002	0.66	0.0	0.04	18.12	0.00	1.459	9.05	1.33	4.8	95.2	0.0	-0.63	1.15	0.37	0.16	0.81	13915	1451	3	115	1	0	0	logfile
✔	7QA8	13880	2024-09-24	2021-11-16	2.7	2.20	2.66	2.7	0.009	1.11	0.0	0.06	13.16	0.01	2.323	1.73	0.75	3.3	96.7	0.0	-2.98	0.59	0.79	2.15	2.5	0.002	0.63	0.0	0.04	13.49	0.00	2.621	4.64	3.93	3.4	96.6	0.0	2.59	0.41	0.59	0.81	2.67	6111	622	11	0	38	70	0	logfile
✔	6PPJ	20440	2024-09-26	2019-07-07	3.5	3.54	—	3.5	0.009	1.15	2.0	0.06	11.63	0.01	2.202	9.16	1.82	7.3	92.7	0.0	-5.81	0.81	0.86	3.88	3.5	0.002	0.66	0.0	0.04	13.55	0.00	2.520	4.41	3.53	5.3	94.7	0.1	-0.58	1.38	0.82	0.85	2.25	12004	1672	7	0	79	0	0	logfile
✔	7ZH2	14718	2024-09-30	2022-04-05	2.71	2.24	2.66	2.5	0.003	0.62	0.0	0.04	13.22	0.00	2.038	2.41	0.30	3.3	96.6	0.1	-0.81	0.73	0.81	3.90	2.5	0.002	0.58	0.0	0.04	15.29	0.00	2.552	2.51	2.20	4.0	95.9	0.0	-0.40	0.38	0.73	0.83	3.83	24419	3060	9	0	36	0	0	logfile
✔	7QPG	14120	2024-09-25	2022-01-04	3.9	4.08	—	2.8	0.002	0.54	0.0	0.04	10.05	0.00	2.093	6.89	0.00	2.7	97.3	0.0	0.34	0.78	0.58	0.22	2.4	0.002	0.67	0.0	0.04	12.91	0.00	2.430	8.41	0.94	2.6	97.4	0.0	1.16	0.79	0.86	0.71	0.32	57164	7156	6	0	0	0	0	logfile
✔	6iG9	9664	2024-09-27	2018-09-25	4.6	5.44	4.27	4.3	0.007	1.07	0.0	0.05	9.51	0.01	2.299	9.69	0.73	10.2	89.7	0.2	-3.99	0.69	0.65	—	4.2	0.002	0.65	0.0	0.04	4.74	0.00	2.556	1.11	0.00	7.6	92.4	0.0	1.58	1.57	0.84	0.79	—	17122	3386	1	0	0	0	0	logfile
✔	7WBL	32405	2024-09-25	2021-12-17	3.4	3.46	—	3.5	0.004	0.60	0.0	0.04	15.43	0.00	2.158	6.95	0.72	3.6	96.1	0.4	0.52	0.67	0.77	2.33	3.5	0.002	0.55	0.0	0.04	16.36	0.00	2.500	4.34	1.44	2.8	97.1	0.1	1.17	0.33	0.67	0.79	1.40	6484	791	3	0	5	0	0	logfile
✔	7AWA	11928	2024-09-23	2020-11-06	3.5	3.83	—	3.6	0.003	0.64	0.0	0.04	14.22	0.00	2.126	6.77	0.00	5.8	94.2	0.0	-2.52	0.57	0.81	2.14	3.6	0.002	0.51	0.0	0.04	15.12	0.00	2.434	4.70	0.34	3.4	96.6	0.0	-0.61	1.18	0.54	0.80	1.57	5310	328	1	0	0	0	2703	logfile
✔	7AP8	11850	2024-09-27	2020-10-16	3.15	3.74	—	3.3	0.003	0.55	0.0	0.04	11.97	0.00	2.018	3.39	1.76	5.4	94.6	0.0	0.12	0.88	0.82	3.38	3.3	0.002	0.54	0.0	0.04	13.67	0.00	1.909	3.70	1.27	5.9	94.1	0.0	0.11	0.69	0.89	0.84	3.12	62909	3782	15	42	5	0	31397	logfile

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