Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UFi	26476	2024-09-28	2022-03-22	3.4	2.59	3.36	3.1	0.013	1.83	0.0	0.08	20.09	0.00	1.645	3.99	11.94	9.1	90.4	0.5	-3.89	0.66	0.70	1.29	3.0	0.003	0.75	0.0	0.04	19.77	0.00	2.483	9.13	4.85	7.9	92.1	0.0	-0.34	1.64	0.75	0.76	1.67	18319	2177	16	42	7	0	0	logfile
✔	6NMD	0447	2024-09-26	2019-01-10	3.49	3.91	—	4.0	0.013	1.11	5.0	0.07	17.37	0.01	2.014	16.61	2.43	10.7	88.9	0.4	-4.62	0.55	0.46	0.29	3.9	0.005	0.85	0.0	0.05	18.62	0.00	1.885	12.41	2.84	8.0	92.0	0.0	-1.78	1.79	0.73	0.79	1.45	11779	1358	7	25	2	6	0	logfile
✔	7DHR	30682	2024-09-24	2020-11-17	3.8	3.96	—	3.9	0.004	0.86	0.0	0.05	14.29	0.01	2.329	3.92	0.31	9.1	90.8	0.1	-6.33	0.70	0.77	3.13	3.9	0.002	0.63	0.0	0.04	15.39	0.00	2.271	6.14	2.47	5.4	94.6	0.0	-3.24	0.45	0.68	0.76	2.28	7057	977	6	0	1	0	0	logfile
✔	7EEi	31077	2024-09-25	2021-03-18	3.6	3.44	—	3.4	0.006	1.09	0.0	0.06	13.71	0.01	1.975	5.03	0.00	0.1	99.9	0.0	-1.90	0.77	0.77	1.99	3.4	0.003	0.66	0.0	0.04	15.46	0.00	2.448	7.19	3.76	6.3	93.7	0.0	0.03	1.22	0.81	0.80	2.14	9825	1400	1	0	0	0	0	logfile
✔	7T4N	25681	2024-09-24	2021-12-10	2.35	2.66	2.38	2.5	0.002	0.42	0.0	0.04	16.22	0.00	2.207	4.39	1.25	1.0	99.0	0.0	0.87	0.63	0.85	3.82	2.5	0.003	0.52	0.0	0.04	16.50	0.00	2.547	4.31	1.53	1.5	98.5	0.0	1.42	0.20	0.66	0.87	3.70	6476	803	2	0	0	0	0	logfile
✔	6PZC	20534	2024-09-24	2019-07-31	4.34	4.63	—	4.4	0.008	1.12	0.0	0.06	11.22	0.01	2.137	7.52	0.42	9.7	90.3	0.0	-5.15	0.60	0.54	—	4.4	0.003	0.72	0.0	0.04	10.65	0.00	2.464	8.95	0.00	3.7	96.2	0.1	0.14	2.77	0.70	0.76	—	7456	1173	1	0	0	0	0	logfile
✔	5Z3L	6879	2024-09-27	2018-01-08	4.31	4.45	—	4.3	0.003	0.61	0.0	0.04	24.56	0.00	2.197	14.10	0.35	9.9	90.0	0.1	-3.74	0.86	0.77	—	4.3	0.004	0.73	0.0	0.04	25.93	0.00	2.480	16.09	0.00	6.1	93.9	0.0	-0.22	2.15	0.88	0.82	—	16783	1347	11	292	0	0	0	logfile
✔	5G2Y	3332	2024-09-26	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	22.50	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.03	0.0	0.05	28.69	0.01	2.040	55.40	0.00	0.0	0.0	0.0	—	4.00	0.88	0.78	—	13494	0	1	630	0	0	0	logfile
✔	6XoW	22282	2024-09-24	2020-07-07	4.6	8.17	4.40	7.0	0.006	1.00	0.0	0.05	13.39	0.01	1.991	24.14	0.23	4.2	95.8	0.0	-0.98	0.87	0.72	—	7.0	0.004	0.77	0.0	0.04	13.33	0.01	2.446	22.13	0.23	4.1	95.9	0.0	-0.08	0.82	0.91	0.82	—	7711	966	1	0	0	0	0	logfile
✔	6HN5	0247	2024-09-24	2018-09-14	3.2	3.48	—	3.3	0.012	1.20	0.0	0.07	10.56	0.01	2.281	7.43	0.12	10.8	89.2	0.0	-3.94	0.76	0.77	3.25	3.3	0.004	0.74	0.0	0.05	13.19	0.00	2.428	8.86	1.62	7.4	92.6	0.0	-2.38	0.75	0.78	0.80	2.44	7869	953	7	0	11	0	0	logfile
✔	7MQE	23944	2024-09-28	2021-05-05	3.69	3.22	3.67	3.5	0.008	0.84	0.0	0.06	14.66	0.00	2.308	1.58	0.77	1.7	98.3	0.0	0.67	0.75	0.81	3.89	3.5	0.003	0.51	0.0	0.04	15.38	0.00	2.565	1.92	0.58	2.6	97.4	0.0	1.22	0.41	0.79	0.83	3.55	12163	1629	16	16	0	0	0	logfile
✔	7N6i	23726	2024-09-28	2021-06-08	3.9	4.39	3.87	4.1	0.014	1.72	26.0	0.13	16.03	0.01	1.336	8.03	0.45	2.1	97.7	0.2	-0.48	0.59	0.61	0.72	4.2	0.004	0.81	0.0	0.04	18.07	0.00	1.816	11.40	2.18	2.9	97.1	0.0	0.78	1.78	0.67	0.80	0.85	18939	2358	19	34	14	0	0	logfile
✔	5ZAK	6904	2024-09-25	2018-02-07	4.4	3.52	—	3.2	0.009	1.61	1.0	0.07	11.72	0.01	2.185	17.87	0.72	17.3	82.4	0.3	-5.20	0.80	0.64	—	3.3	0.004	0.96	0.0	0.05	13.10	0.01	2.415	23.06	0.00	14.5	85.5	0.0	-2.66	1.64	0.80	0.65	—	11112	1389	2	0	0	0	0	logfile
✔	6LXE	30006	2024-09-25	2020-02-10	4.2	4.23	—	4.0	0.002	0.59	0.0	0.04	15.29	0.00	2.030	16.92	0.14	8.7	91.3	0.0	-3.22	0.85	0.70	—	3.9	0.003	0.77	0.0	0.04	14.86	0.00	2.344	16.22	0.00	9.6	90.4	0.0	-2.07	1.28	0.85	0.70	—	6519	813	4	0	2	0	0	logfile
✔	7MQG	23946	2024-09-29	2021-05-05	3.25	3.02	3.18	3.1	0.006	0.78	0.0	0.05	13.51	0.00	2.191	2.87	0.00	1.2	98.8	0.0	0.73	0.72	0.82	4.53	3.1	0.006	0.62	0.0	0.05	15.41	0.00	2.501	2.71	1.01	3.4	96.6	0.0	0.43	0.41	0.77	0.87	4.21	12670	1640	16	16	0	0	0	logfile
✔	7DDP	30653	2024-09-24	2020-10-29	3.4	2.88	—	3.3	0.003	0.56	0.0	0.04	14.11	0.00	2.100	8.38	0.29	2.0	98.0	0.0	-1.50	0.70	0.77	2.19	3.3	0.004	0.59	0.0	0.04	16.00	0.00	1.984	7.98	2.01	2.5	97.5	0.0	0.72	0.38	0.71	0.79	1.92	6477	791	4	0	6	0	0	logfile
✔	7RZY	24783	2024-09-27	2021-08-28	3.5	2.57	3.55	4.0	0.014	1.83	0.0	0.08	15.46	0.00	2.491	1.92	0.80	10.2	88.4	1.4	-2.89	0.55	0.40	0.25	3.5	0.004	0.84	0.0	0.04	17.77	0.01	2.199	11.70	1.96	7.7	91.7	0.6	-0.91	1.32	0.70	0.66	0.70	17458	2177	13	0	7	0	0	logfile
✔	7VBM	31882	2024-09-25	2021-08-31	3.4	2.78	—	3.1	0.005	0.75	1.0	0.04	28.39	0.01	2.221	6.15	0.18	2.0	98.0	0.0	1.47	0.68	0.78	2.79	3.1	0.003	0.55	0.0	0.03	28.69	0.00	2.526	5.83	1.07	1.7	98.3	0.0	2.83	0.28	0.68	0.80	1.94	10475	677	10	252	0	0	0	logfile
✔	7XJH	33227	2024-09-24	2022-04-18	3.3	2.96	3.18	3.2	0.003	0.58	0.0	0.04	14.02	0.00	2.218	7.28	0.00	3.1	96.9	0.0	0.45	0.60	0.78	2.05	3.2	0.002	0.56	0.0	0.04	15.39	0.00	2.547	5.80	1.72	3.0	97.0	0.0	0.65	0.37	0.63	0.81	1.73	7832	1027	6	0	1	0	0	logfile
✔	8H1P	34430	2024-09-27	2022-10-03	3.48	3.37	3.43	3.5	0.003	0.56	0.0	0.04	18.45	0.00	2.208	10.09	0.00	0.5	99.5	0.0	0.52	0.71	0.79	0.67	3.4	0.003	0.56	0.0	0.04	18.04	0.00	2.432	7.69	1.66	2.8	97.2	0.0	0.89	0.59	0.70	0.79	1.36	15950	2024	11	0	0	0	0	logfile

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