Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oG6	12879	2024-09-23	2021-05-06	3.3	3.47	—	2.9	0.008	0.82	0.0	0.04	18.38	0.01	2.325	7.36	6.10	9.6	90.4	0.0	-4.47	0.28	0.82	2.77	2.9	0.003	0.65	0.0	0.04	17.44	0.01	2.519	5.44	3.05	5.1	94.9	0.0	-0.49	0.53	0.27	0.84	2.91	1602	199	2	5	0	0	0	logfile
✔	7U15	26278	2024-09-24	2022-02-19	3.0	3.14	—	3.3	0.006	1.22	0.0	0.12	17.23	0.01	1.886	12.16	3.44	3.8	96.2	0.0	-6.51	0.26	0.64	1.55	3.2	0.003	0.73	0.0	0.11	16.12	0.00	2.335	10.54	4.50	16.8	83.2	0.0	-5.22	0.92	0.27	0.69	2.98	6684	405	6	0	12	0	3255	logfile
✔	9EoE	19852	2024-09-23	2024-03-14	2.3	2.15	2.26	2.2	0.009	1.54	2.0	0.10	14.88	0.01	2.621	4.14	4.41	8.0	92.0	0.0	-3.08	0.21	0.80	6.35	2.2	0.004	0.72	0.0	0.05	16.64	0.01	2.632	2.51	2.94	5.3	94.7	0.0	-1.85	1.25	0.27	0.83	7.06	595	77	1	0	0	0	0	logfile
✔	6X0U	21984	2024-09-23	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.74	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.002	0.68	0.0	0.03	17.96	0.00	2.555	6.38	2.63	3.7	96.3	0.0	1.12	0.78	0.27	0.78	2.63	3091	398	4	0	0	0	0	logfile
✔	9Eo7	19846	2024-09-23	2024-03-14	2.8	2.99	2.48	3.0	0.009	1.59	1.0	0.10	12.22	0.01	2.583	3.31	1.47	6.7	93.3	0.0	-4.16	0.28	0.88	5.19	3.0	0.004	0.60	0.0	0.05	14.11	0.00	2.525	6.71	1.47	1.3	98.7	0.0	-1.88	0.68	0.27	0.88	3.98	595	77	1	0	0	0	0	logfile
✔	6VHL	21207	2024-09-23	2020-01-10	3.3	3.60	—	3.5	0.007	1.03	0.0	0.07	15.85	0.01	1.791	14.51	4.48	14.7	85.3	0.0	-6.30	0.26	0.70	3.54	3.6	0.003	0.75	0.0	0.04	16.38	0.00	2.631	2.49	2.99	8.0	92.0	0.0	-3.08	2.72	0.27	0.69	3.28	1190	158	4	0	0	0	0	logfile
✔	8P34	17383	2024-09-23	2023-05-17	2.61	2.80	2.24	2.8	0.009	1.32	0.0	0.08	11.05	0.01	2.651	0.69	0.00	5.4	94.6	0.0	-1.84	0.29	0.90	7.34	2.8	0.005	0.64	0.0	0.05	13.81	0.00	2.682	0.69	1.23	4.3	95.7	0.0	-1.79	0.21	0.28	0.88	6.57	711	94	1	0	0	0	0	logfile
✔	7UiU	26553	2024-09-23	2022-03-29	2.8	3.11	2.72	3.1	0.004	0.62	0.0	0.04	13.60	0.00	2.356	3.35	0.00	4.8	95.2	0.0	-2.09	0.28	0.82	1.99	3.3	0.005	0.99	0.0	0.05	18.07	0.00	2.508	8.38	1.67	6.0	94.0	0.0	-2.59	1.37	0.28	0.89	2.33	607	85	1	0	0	0	0	logfile
✔	8UPT	42455	2024-09-23	2023-10-23	2.8	3.38	2.84	2.9	0.016	2.20	0.0	0.16	30.45	0.01	1.072	99.56	0.00	0.0	0.0	0.0	—	0.23	0.59	—	2.9	0.006	0.73	0.0	0.04	27.67	0.01	2.090	18.78	0.00	0.0	0.0	0.0	—	0.98	0.28	0.88	—	1518	0	1	71	0	0	0	logfile
✔	8RB7	19027	2024-09-23	2023-12-03	3.2	3.80	3.05	3.8	0.014	1.83	0.0	0.10	14.96	0.02	2.398	0.86	0.96	4.2	95.8	0.0	-1.02	0.28	0.71	1.70	3.8	0.003	0.61	0.0	0.04	17.94	0.00	2.317	8.21	0.32	2.5	97.5	0.0	1.87	2.08	0.28	0.76	1.70	5848	360	2	0	0	0	2948	logfile
✔	7U11	26274	2024-09-23	2022-02-19	3.2	2.77	—	3.4	0.006	0.73	0.0	0.06	17.79	0.00	2.186	14.68	2.36	6.0	94.0	0.0	-2.79	0.29	0.64	3.31	3.3	0.003	0.73	0.0	0.06	17.17	0.00	2.482	6.83	1.31	7.5	92.5	0.0	-3.43	1.45	0.28	0.67	3.06	3456	405	6	0	12	0	0	logfile
✔	8GZ9	34393	2024-09-23	2022-09-26	2.62	2.44	2.40	2.4	0.003	0.69	0.0	0.06	14.01	0.00	2.670	1.93	0.00	0.3	99.7	0.0	-0.15	0.28	0.90	7.26	2.4	0.002	0.55	0.0	0.06	14.22	0.00	2.674	0.96	2.21	0.6	99.4	0.0	-0.31	0.27	0.28	0.91	8.15	2426	390	58	0	0	24	0	logfile
✔	7ABK	11698	2024-09-23	2020-09-07	3.6	4.10	3.49	3.9	0.004	0.66	0.0	0.04	16.30	0.00	2.315	5.67	1.23	1.5	98.5	0.0	0.91	0.28	0.87	1.10	3.9	0.003	0.70	0.0	0.03	19.72	0.00	2.500	5.67	4.94	2.1	97.9	0.0	4.99	1.33	0.28	0.86	1.10	1574	196	1	0	0	0	0	logfile
✔	7U10	26273	2024-09-23	2022-02-19	3.0	3.45	—	4.3	0.004	0.64	0.0	0.05	17.22	0.00	2.031	10.70	0.00	6.8	93.2	0.0	-2.82	0.37	0.64	3.73	4.1	0.004	0.73	0.0	0.06	17.78	0.00	2.505	10.25	1.59	5.8	94.2	0.0	-3.22	2.72	0.28	0.68	3.60	3429	405	6	0	12	0	0	logfile
✔	7P3R	13185	2024-09-24	2021-07-08	3.65	3.16	3.57	3.5	0.006	0.81	1.0	0.05	13.66	0.01	2.306	1.88	0.28	2.7	97.3	0.0	-3.67	0.30	0.70	1.05	3.5	0.003	0.56	0.0	0.04	14.63	0.00	2.508	3.61	3.65	2.2	97.8	0.0	3.60	0.56	0.29	0.64	1.05	7738	1338	4	0	0	0	0	logfile
✔	8Ri9	19184	2024-09-23	2023-12-18	3.3	3.49	2.64	3.5	0.011	1.88	0.0	0.08	12.25	0.01	2.613	3.55	2.38	3.6	96.4	0.0	-1.61	0.44	0.71	6.15	3.7	0.004	0.61	0.0	0.05	11.68	0.00	2.366	4.50	0.00	10.2	89.8	0.0	-2.48	0.63	0.29	0.64	6.15	4230	295	5	0	0	0	2180	logfile
✔	9Eo9	19849	2024-09-23	2024-03-14	3.3	3.30	3.20	3.4	0.016	1.57	0.0	0.10	14.49	0.01	2.638	3.72	5.88	7.3	92.7	0.0	-4.62	0.25	0.84	3.70	3.5	0.003	0.79	0.0	0.05	14.70	0.00	2.549	3.75	2.21	2.0	98.0	0.0	-2.43	1.06	0.29	0.79	3.65	1190	154	2	0	0	0	0	logfile
✔	6HRE	0259	2024-09-23	2018-09-26	3.2	2.74	2.87	3.3	0.019	1.47	0.0	0.11	13.34	0.01	2.474	6.01	0.00	12.0	88.0	0.0	-4.17	0.32	0.80	4.40	3.3	0.005	0.84	0.0	0.05	17.20	0.00	2.598	6.15	2.99	8.2	91.8	0.0	-3.49	0.75	0.29	0.78	3.74	3522	462	6	0	0	0	0	logfile
✔	8X63	38078	2024-09-23	2023-11-20	3.2	4.09	3.72	4.5	0.006	0.77	1.0	0.05	15.29	0.01	2.411	9.43	0.81	8.0	92.0	0.0	-0.11	0.13	0.13	0.69	4.1	0.003	0.75	0.0	0.04	16.99	0.01	2.632	7.24	3.25	8.3	91.7	0.0	0.37	1.30	0.29	0.47	1.06	2252	270	2	0	1	0	0	logfile
✔	8RB5	19026	2024-09-24	2023-12-03	3.3	3.79	3.44	3.7	0.012	1.72	0.0	0.08	14.63	0.01	2.585	0.34	0.64	2.2	97.8	0.0	-2.05	0.29	0.74	1.91	3.7	0.003	0.58	0.0	0.03	17.45	0.01	2.432	7.53	0.64	2.8	97.2	0.0	1.72	1.43	0.30	0.80	1.92	8772	540	3	0	0	0	4422	logfile

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