Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8JGS	36245	2024-09-28	2023-05-21	3.96	3.93	3.84	3.9	0.003	0.57	0.0	0.04	13.47	0.01	1.903	15.84	0.00	5.0	95.0	0.0	-0.58	0.38	0.43	0.39	3.9	0.003	0.59	0.0	0.04	15.30	0.00	2.331	13.82	1.50	4.6	95.4	0.0	-0.17	1.09	0.39	0.46	0.35	20268	1278	2	0	0	0	10182	logfile
✔	8F7J	28905	2024-09-23	2022-11-18	4.32	4.45	4.63	8.9	0.005	0.92	0.0	0.05	15.44	0.01	2.282	15.12	0.26	5.7	94.3	0.0	-3.18	0.38	0.32	—	4.3	0.005	0.92	0.0	0.05	14.34	0.01	2.486	27.01	0.00	11.1	88.9	0.0	-3.32	2.96	0.45	0.47	—	3321	407	1	0	0	0	0	logfile
✔	8X63	38078	2024-09-23	2023-11-20	3.2	4.09	3.72	4.5	0.006	0.77	1.0	0.05	15.29	0.01	2.411	9.43	0.81	8.0	92.0	0.0	-0.11	0.13	0.13	0.69	4.1	0.003	0.75	0.0	0.04	16.99	0.01	2.632	7.24	3.25	8.3	91.7	0.0	0.37	1.30	0.29	0.47	1.06	2252	270	2	0	1	0	0	logfile
✔	7MDW	23782	2024-09-23	2021-04-06	3.58	2.25	3.45	1.5	0.002	0.55	0.0	0.04	12.68	0.00	2.293	8.46	0.00	6.5	93.5	0.0	-1.58	0.52	0.44	1.65	1.5	0.002	0.56	0.0	0.04	14.70	0.00	2.383	9.52	2.25	9.1	90.9	0.0	-2.53	0.99	0.55	0.47	2.15	3392	435	4	0	1	0	0	logfile
✔	8GH8	40036	2024-09-24	2023-03-09	4.3	4.08	3.85	4.0	0.004	0.79	0.0	0.05	26.60	0.01	2.219	10.05	0.23	12.7	86.8	0.5	-3.65	0.48	0.44	—	4.0	0.003	0.72	0.0	0.04	26.13	0.01	2.527	8.74	0.00	11.6	88.2	0.2	-3.80	1.06	0.51	0.48	—	6991	559	8	136	0	0	0	logfile
✔	8E4C	27888	2024-09-24	2022-08-18	4.0	3.22	3.15	3.1	0.005	0.84	2.0	0.07	16.28	0.01	2.251	7.49	1.84	6.1	93.9	0.0	-0.24	0.48	0.49	—	3.1	0.004	0.81	0.0	0.05	17.26	0.01	2.148	13.71	6.21	5.5	94.5	0.0	-0.53	1.25	0.48	0.48	—	6398	805	6	0	5	0	0	logfile
✔	7XAQ	33097	2024-09-29	2022-03-18	3.59	4.39	—	4.3	0.007	1.02	1.0	0.05	23.46	0.01	1.800	11.83	2.87	11.8	87.9	0.3	-4.12	0.78	0.53	0.56	3.4	0.004	0.82	0.0	0.04	24.06	0.01	2.329	22.79	3.46	9.1	90.8	0.1	-1.15	0.88	0.76	0.49	0.46	13396	1197	10	172	0	0	0	logfile
✔	7K8D	22728	2024-09-25	2020-09-26	4.33	4.48	—	4.7	0.004	1.12	0.0	0.06	12.53	0.01	2.205	23.61	1.86	4.3	95.7	0.0	-2.98	0.33	0.40	—	4.6	0.003	0.85	0.0	0.04	13.49	0.01	2.405	14.70	0.00	4.6	95.4	0.0	0.41	1.43	0.41	0.49	—	5529	725	1	0	0	0	0	logfile
✔	7oTi	13060	2024-09-24	2021-06-10	4.2	4.80	—	7.9	0.014	1.99	12.0	0.10	16.95	0.02	2.507	0.59	4.71	10.8	87.9	1.4	-3.63	0.36	0.23	—	4.9	0.003	0.81	0.0	0.04	14.41	0.00	2.422	13.39	0.00	6.3	93.3	0.4	-1.23	1.71	0.51	0.49	—	9171	1182	1	0	0	0	0	logfile
✔	8ENR	28277	2024-09-24	2022-09-30	3.8	4.03	4.04	4.3	0.004	0.80	0.0	0.05	14.88	0.00	2.204	17.13	0.89	0.7	99.3	0.0	1.04	0.43	0.37	0.94	4.2	0.006	1.05	0.0	0.05	17.71	0.00	2.444	23.63	4.02	10.0	90.0	0.0	-3.35	2.50	0.51	0.50	2.33	6392	888	8	0	0	0	0	logfile
✔	8DGi	27423	2024-09-26	2022-06-23	3.94	4.27	4.04	4.1	0.005	1.16	4.0	0.06	15.93	0.01	2.263	8.89	0.67	5.9	93.8	0.3	-2.32	0.67	0.52	0.27	4.1	0.003	0.75	0.0	0.04	16.49	0.00	2.495	15.02	3.26	5.9	94.0	0.1	-0.41	0.58	0.66	0.50	0.27	13580	1690	2	0	0	0	0	logfile
✔	8SH2	40477	2024-09-28	2023-04-13	3.74	3.89	3.81	3.9	0.006	1.20	0.0	0.06	13.35	0.01	2.321	14.58	0.35	4.8	95.2	0.0	-2.82	0.58	0.42	0.91	3.9	0.004	0.83	0.0	0.05	15.52	0.00	2.452	19.72	2.84	5.5	94.5	0.0	-1.88	1.22	0.64	0.50	1.07	18038	2254	12	0	0	0	0	logfile
✔	7JGJ	22328	2024-09-26	2020-07-19	4.8	7.06	—	6.5	0.013	2.22	17.0	0.31	17.49	0.01	1.656	7.23	12.68	7.2	91.6	1.2	-2.09	0.88	0.68	—	6.5	0.003	0.78	0.0	0.04	13.60	0.00	2.350	21.58	0.00	7.2	92.6	0.1	-2.20	1.26	0.84	0.50	—	13324	1707	3	0	0	0	0	logfile
✔	8oEF	16825	2024-09-26	2023-03-10	4.0	3.42	4.07	4.5	0.002	0.47	0.0	0.04	15.21	0.00	2.235	5.57	0.00	1.7	98.3	0.0	0.95	0.63	0.45	—	4.5	0.002	0.55	0.0	0.04	16.09	0.00	2.346	8.15	1.33	2.4	97.6	0.0	1.01	0.58	0.65	0.50	—	9687	612	1	0	0	0	4859	logfile
✔	7NCH	12266	2024-09-25	2021-01-28	3.84	3.76	3.69	3.8	0.013	1.61	2.0	0.10	14.68	0.00	2.485	0.00	0.19	9.4	90.6	0.0	-3.70	0.60	0.45	2.36	3.8	0.003	0.65	2.0	0.05	15.71	0.00	2.361	6.57	1.48	10.8	89.2	0.0	-3.88	1.64	0.63	0.51	2.62	11292	816	12	0	0	0	5796	logfile
✔	8ZL9	38897	2024-09-24	2024-05-17	4.36	4.49	4.31	4.4	0.005	1.01	1.0	0.06	14.25	0.01	2.243	9.31	0.14	7.6	92.0	0.4	-2.34	0.56	0.51	—	4.4	0.003	0.70	0.0	0.05	14.30	0.01	2.400	16.62	0.00	8.0	91.9	0.1	-1.94	1.26	0.57	0.52	—	6644	838	5	0	0	0	0	logfile
✔	3J5R	5777	2024-09-27	2013-10-28	4.2	4.88	—	7.2	0.011	1.57	0.0	0.09	20.25	0.01	1.204	84.36	28.64	7.8	91.0	1.2	-0.91	0.58	0.45	—	7.3	0.004	0.93	0.0	0.04	13.10	0.01	2.267	20.44	0.00	6.6	93.1	0.3	0.01	1.78	0.67	0.52	—	17564	2324	8	0	44	0	0	logfile
✔	7URM	26714	2024-09-23	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	28.63	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.15	0.0	0.05	27.73	0.01	2.031	24.03	0.00	0.0	0.0	0.0	—	1.64	0.15	0.52	—	1905	0	1	90	0	0	0	logfile
✔	8B3A	15824	2024-09-23	2022-09-16	3.8	3.66	2.91	4.1	0.010	1.90	0.0	0.10	27.06	0.10	2.613	1.89	0.00	0.0	100.0	0.0	-4.71	0.55	0.64	5.18	4.1	0.079	5.90	24.0	0.41	22.68	0.05	1.864	283.65	44.76	66.7	4.0	29.3	-10.74	2.50	0.40	0.52	2.89	2010	210	60	0	60	0	0	logfile
✔	8Z7N	39820	2024-09-27	2024-04-20	3.58	3.87	3.60	3.6	0.010	1.35	0.0	0.07	22.40	0.01	1.848	53.22	29.65	22.6	76.7	0.7	-5.94	0.61	0.50	0.67	3.6	0.004	0.96	0.0	0.05	18.54	0.01	2.452	20.66	4.49	14.0	86.0	0.0	-3.47	1.86	0.62	0.52	0.60	16641	2094	15	0	18	0	0	logfile

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