Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RZQ	24774	2024-09-23	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.002	0.29	0.0	0.03	14.97	0.00	2.630	4.28	1.07	0.0	100.0	0.0	6.40	0.29	0.81	0.82	1.34	2421	322	6	0	0	0	0	logfile
✔	7EG6	31106	2024-09-26	2021-03-24	3.1	3.55	—	3.2	0.007	0.73	0.0	0.04	27.43	0.01	2.328	1.56	0.00	0.9	99.1	0.0	-1.78	0.88	0.86	3.75	3.2	0.004	0.56	0.0	0.03	27.86	0.00	2.508	5.65	0.31	1.6	98.4	0.0	3.28	0.43	0.89	0.89	2.54	12118	779	11	292	0	0	0	logfile
✔	7WAY	32389	2024-09-25	2021-12-15	2.9	3.11	—	2.9	0.004	0.54	0.0	0.04	19.59	0.00	2.172	5.59	0.00	2.8	97.2	0.0	1.31	0.87	0.85	2.73	2.9	0.003	0.55	0.0	0.03	20.05	0.00	2.508	4.13	0.48	2.2	97.8	0.0	1.88	0.34	0.88	0.88	2.26	11453	960	4	175	0	0	0	logfile
✔	7RZS	24776	2024-09-23	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.003	0.41	0.0	0.03	16.11	0.00	2.489	3.44	1.42	0.0	100.0	0.0	5.54	0.87	0.79	0.82	1.14	2445	324	6	0	0	0	0	logfile
✔	8ATF	15647	2024-09-27	2022-08-23	3.45	3.54	3.42	3.5	0.013	1.99	4.0	0.11	25.04	0.03	2.090	4.15	1.81	3.1	96.2	0.7	-2.09	0.71	0.80	2.97	3.5	0.003	0.58	0.0	0.03	25.69	0.00	2.487	5.87	2.48	1.6	98.4	0.0	2.54	2.23	0.78	0.84	1.51	15719	1219	13	286	1	0	0	logfile
✔	8FA2	28948	2024-09-23	2022-11-25	2.82	2.48	3.15	2.1	0.006	0.55	0.0	0.04	13.54	0.00	2.297	6.56	0.00	1.8	98.2	0.0	-0.12	0.76	0.79	0.72	2.0	0.003	0.45	0.0	0.03	14.36	0.00	2.635	6.17	0.67	0.0	100.0	0.0	5.77	0.33	0.76	0.79	0.61	2577	342	6	0	0	0	0	logfile
✔	7RZR	24775	2024-09-23	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.005	0.40	0.0	0.03	15.17	0.00	2.631	4.03	0.35	0.0	100.0	0.0	5.91	0.32	0.82	0.83	3.51	2448	324	6	0	0	0	0	logfile
✔	7RZV	24779	2024-09-23	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.35	0.0	0.03	15.93	0.00	2.430	3.69	1.01	0.0	100.0	0.0	5.97	0.88	0.83	0.83	1.79	2562	339	6	0	0	0	0	logfile
✔	7Jo9	22408	2024-09-27	2020-08-06	3.3	3.00	—	3.2	0.008	0.74	0.0	0.04	25.95	0.01	2.222	4.80	0.41	5.1	94.9	0.0	0.34	0.79	0.82	1.58	3.2	0.003	0.57	0.0	0.03	26.36	0.00	2.486	4.52	1.24	2.2	97.8	0.0	1.79	0.63	0.82	0.86	1.89	14994	1125	12	290	1	0	0	logfile
✔	7P13	13154	2024-09-26	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	2.1	0.002	0.44	0.0	0.03	17.09	0.00	2.472	15.03	1.44	2.3	97.7	0.0	5.41	0.51	0.83	0.87	3.25	13727	1743	7	0	0	0	154	logfile
✔	6MEC	9106	2024-09-29	2018-09-06	3.6	3.69	—	3.6	0.010	1.21	0.0	0.06	25.56	0.01	1.659	15.45	0.00	13.7	86.3	0.0	-4.93	0.86	0.80	2.53	3.6	0.005	0.69	0.0	0.03	25.22	0.01	1.789	13.91	2.54	8.8	91.2	0.0	-1.93	0.93	0.86	0.81	1.96	21276	414	5	832	52	0	0	logfile
✔	6ME0	9105	2024-09-29	2018-09-05	3.6	3.74	—	3.6	0.010	1.16	0.0	0.05	25.12	0.01	1.531	13.75	0.00	11.8	88.2	0.0	-5.11	0.89	0.81	2.89	3.6	0.003	0.61	0.0	0.03	24.74	0.00	1.877	13.95	1.97	10.0	90.0	0.0	-2.06	0.49	0.88	0.81	1.87	21539	414	4	845	33	0	0	logfile
✔	8EXA	28656	2024-09-23	2022-10-25	3.14	3.45	3.09	3.4	0.004	0.54	0.0	0.03	22.74	0.00	2.223	15.79	0.40	3.6	96.4	0.0	0.27	0.61	0.69	4.07	3.4	0.003	0.49	0.0	0.03	22.58	0.00	2.495	12.36	2.83	3.3	96.7	0.0	0.89	1.14	0.60	0.68	3.79	5539	341	4	139	0	0	0	logfile
✔	6SEG	10155	2024-09-25	2019-07-30	3.1	3.19	—	3.2	0.006	0.86	0.0	0.05	27.75	0.01	2.283	3.10	0.00	1.3	98.7	0.0	-3.47	0.66	0.79	3.38	3.2	0.004	0.58	0.0	0.03	28.46	0.00	2.184	6.91	1.84	1.5	98.5	0.0	1.49	0.35	0.66	0.81	2.36	11689	728	10	290	0	0	0	logfile
✔	6S01	10069	2024-09-26	2019-06-13	3.2	3.27	3.17	3.2	0.008	0.72	0.0	0.04	26.20	0.01	2.284	3.83	1.82	3.9	96.1	0.0	-5.85	0.74	0.77	3.18	3.2	0.004	0.59	0.0	0.03	27.49	0.00	2.092	7.29	2.24	2.9	97.1	0.0	1.12	0.45	0.82	0.85	2.82	12959	853	11	300	0	0	0	logfile
✔	6X0U	21984	2024-09-23	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.74	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.002	0.68	0.0	0.03	17.96	0.00	2.555	6.38	2.63	3.7	96.3	0.0	1.12	0.78	0.27	0.78	2.63	3091	398	4	0	0	0	0	logfile
✔	8DEP	27394	2024-09-23	2022-06-21	3.6	4.01	3.65	3.8	0.008	0.76	0.0	0.07	19.70	0.01	2.197	5.44	0.65	0.5	99.5	0.0	3.03	0.47	0.78	1.93	3.9	0.003	0.60	0.0	0.03	13.22	0.00	2.582	6.08	2.59	1.3	98.7	0.0	3.09	0.66	0.45	0.77	1.78	3223	398	2	0	4	0	0	logfile
✔	7TX6	26155	2024-09-23	2022-02-07	3.3	3.60	3.29	3.5	0.008	0.90	1.0	0.05	17.01	0.01	2.327	6.69	0.62	3.0	97.0	0.0	2.51	0.53	0.76	2.79	3.6	0.002	0.66	1.0	0.03	15.22	0.00	2.610	7.01	1.56	2.5	97.5	0.0	3.45	1.18	0.53	0.77	2.49	3169	398	2	0	2	0	0	logfile
✔	7Y00	33536	2024-09-26	2022-06-03	3.96	4.73	3.89	3.9	0.004	0.69	0.0	0.04	27.46	0.00	1.717	12.80	0.31	1.5	98.5	0.0	0.85	0.90	0.80	0.94	3.9	0.005	0.91	1.0	0.03	28.92	0.00	2.081	12.39	1.89	2.3	97.6	0.1	2.07	1.72	0.93	0.88	0.93	12411	762	10	310	0	0	0	logfile
✔	7RZU	24778	2024-09-23	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.003	0.48	0.0	0.03	15.61	0.00	2.626	4.66	1.40	0.0	100.0	0.0	5.29	0.48	0.80	0.81	1.95	2439	324	6	0	0	0	0	logfile

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