Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FHK	29087	2024-09-28	2022-12-14	2.9	2.20	—	1.7	0.008	1.17	1.0	0.06	18.88	0.02	2.200	7.55	0.39	7.0	93.0	0.0	-1.60	0.73	0.68	1.79	1.7	0.003	0.63	0.0	0.04	18.05	0.01	1.801	10.59	1.64	7.9	92.1	0.0	-0.70	1.31	0.75	0.73	1.87	19947	1219	4	0	20	0	9827	logfile
✔	8JLB	36391	2024-09-25	2023-06-02	2.36	2.12	2.25	2.5	0.004	0.69	0.0	0.04	29.91	0.01	1.988	3.26	0.16	1.5	98.5	0.0	0.69	0.76	0.85	3.59	1.7	0.004	0.59	0.0	0.04	28.20	0.00	2.207	3.64	1.79	1.1	98.9	0.0	2.96	1.10	0.77	0.85	3.23	11844	746	10	290	0	0	0	logfile
✔	8YZK	39696	2024-09-24	2024-04-07	3.4	2.39	3.43	1.7	0.003	0.76	0.0	0.04	18.28	0.01	2.181	13.45	1.07	8.9	91.1	0.0	-1.21	0.68	0.59	0.53	1.7	0.003	0.72	0.0	0.04	18.37	0.00	2.465	14.16	5.36	7.6	92.3	0.1	-0.85	0.34	0.69	0.62	0.30	6470	866	4	0	0	0	0	logfile
✔	8SZF	40914	2024-09-26	2023-05-29	2.8	2.08	—	1.7	0.005	0.70	1.0	0.05	13.19	0.01	2.268	4.64	0.00	3.1	96.9	0.0	0.03	0.79	0.83	3.52	1.7	0.002	0.52	0.0	0.04	15.00	0.00	2.311	2.93	0.96	2.8	97.2	0.0	0.70	0.34	0.79	0.83	2.60	12813	1602	9	0	20	0	0	logfile
✔	8UHF	42279	2024-09-26	2023-10-09	3.8	3.77	—	1.7	0.002	0.49	0.0	0.04	12.21	0.00	2.126	10.07	0.00	3.0	97.0	0.0	-1.49	0.62	0.79	0.57	1.7	0.005	0.91	0.0	0.04	16.07	0.00	2.321	20.10	2.30	4.7	95.3	0.0	-0.33	1.24	0.63	0.81	0.65	12411	1739	9	0	0	0	0	logfile
✔	8GB3	29912	2024-09-23	2023-02-24	3.7	2.58	—	1.8	0.003	0.52	0.0	0.04	12.39	0.00	2.202	15.48	4.31	6.9	93.1	0.0	-0.39	0.66	0.61	0.82	1.7	0.004	0.70	0.0	0.04	14.85	0.00	2.495	16.11	4.66	7.5	92.5	0.0	-0.56	0.47	0.67	0.61	0.90	5537	735	3	0	0	0	0	logfile
✔	7UWL	26835	2024-09-25	2022-05-03	3.7	2.40	3.59	1.9	0.005	0.78	1.0	0.05	16.74	0.00	2.137	15.51	0.63	7.1	92.9	0.0	-1.39	0.68	0.64	1.65	1.7	0.004	0.80	0.0	0.05	16.71	0.00	2.432	12.38	4.15	7.6	92.4	0.0	-1.56	0.41	0.69	0.65	1.65	10100	1236	16	0	22	0	0	logfile
✔	8iKL	35516	2024-09-24	2023-02-28	2.33	2.00	2.35	1.7	0.004	0.53	0.0	0.04	12.54	0.00	2.191	5.04	0.00	1.6	98.4	0.0	1.25	0.81	0.80	4.16	1.7	0.003	0.54	0.0	0.04	15.24	0.00	2.532	5.40	1.19	2.5	97.5	0.0	1.62	0.34	0.83	0.83	3.53	6942	875	4	0	0	0	0	logfile
✔	8JRN	36599	2024-09-26	2023-06-17	2.6	2.12	2.69	1.7	0.004	0.51	0.0	0.04	17.31	0.00	1.840	9.52	0.26	1.7	98.3	0.0	0.37	0.80	0.80	2.85	1.7	0.003	0.57	0.0	0.04	18.06	0.00	2.489	6.83	2.09	1.6	98.4	0.0	1.27	0.50	0.80	0.81	2.95	13672	1660	6	0	4	0	0	logfile
✔	8oM9	16971	2024-09-26	2023-03-31	3.32	2.45	3.31	2.0	0.008	1.29	3.0	0.09	18.88	0.00	2.025	25.29	2.76	6.3	93.7	0.0	-1.44	0.71	0.73	0.58	1.7	0.003	0.69	0.0	0.04	19.52	0.00	1.880	17.56	4.29	5.5	94.5	0.0	-0.72	0.47	0.68	0.66	0.50	13314	1548	6	44	4	0	0	logfile
✔	8J97	36090	2024-09-23	2023-05-02	3.2	2.37	3.18	1.6	0.007	0.92	1.0	0.05	13.20	0.01	2.266	9.42	0.28	5.8	94.2	0.0	-1.02	0.73	0.71	3.94	1.7	0.004	0.71	0.0	0.05	14.72	0.01	2.558	7.92	2.25	6.2	93.8	0.0	-0.44	0.43	0.73	0.71	2.78	3863	544	4	0	0	0	0	logfile
✔	7Z0o	14428	2024-09-26	2022-02-23	2.8	1.99	2.70	1.8	0.004	0.66	0.0	0.04	19.64	0.00	2.189	6.20	1.42	1.7	98.3	0.0	1.08	0.68	0.73	3.27	1.7	0.004	0.58	0.0	0.04	21.11	0.00	2.557	7.49	5.15	1.8	98.2	0.0	1.74	0.81	0.77	0.79	3.37	11864	1256	10	78	0	0	0	logfile
✔	8D37	27155	2024-09-27	2022-05-31	2.65	2.08	2.72	1.8	0.003	0.52	0.0	0.04	12.72	0.00	1.962	4.63	0.32	3.7	96.3	0.0	0.95	0.66	0.73	1.85	1.7	0.005	0.89	1.0	0.04	18.30	0.01	2.075	11.37	4.13	3.9	96.1	0.0	0.54	0.73	0.67	0.74	1.51	15314	1784	6	48	2	0	0	logfile
✔	7N5F	24188	2024-09-23	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.56	0.0	0.04	17.39	0.00	2.571	6.26	4.13	1.6	98.4	0.0	2.74	0.79	0.36	0.77	2.56	3037	386	2	0	1	0	0	logfile
✔	8UDL	42150	2024-09-27	2023-09-28	2.37	1.99	2.45	1.7	0.003	0.74	0.0	0.05	15.49	0.01	2.257	2.17	0.39	3.8	96.1	0.1	-0.77	0.66	0.76	3.31	1.7	0.005	0.83	0.0	0.05	19.10	0.01	2.259	6.42	3.29	4.5	95.5	0.0	-0.04	2.69	0.67	0.78	2.46	15245	1783	5	46	0	0	0	logfile
✔	7T9i	25758	2024-09-29	2021-12-19	2.9	2.43	—	1.9	0.005	0.91	1.0	0.05	12.78	0.01	2.016	3.30	0.62	3.6	96.4	0.0	-0.16	0.69	0.63	2.32	1.8	0.004	0.70	0.0	0.04	14.97	0.00	2.310	7.36	2.58	6.4	93.6	0.0	-0.62	1.11	0.74	0.72	2.59	23529	1532	11	0	8	0	11557	logfile
✔	7Y5S	33623	2024-09-25	2022-06-17	3.0	2.29	2.98	2.9	0.003	0.63	0.0	0.05	12.39	0.01	2.185	9.34	0.00	7.0	93.0	0.0	-2.10	0.75	0.70	2.12	1.8	0.005	0.77	0.0	0.05	15.72	0.01	2.341	12.59	2.48	8.9	91.1	0.0	-2.35	1.33	0.79	0.79	3.48	11535	1515	3	0	0	0	0	logfile
✔	7WiG	32529	2024-09-24	2022-01-03	2.7	2.14	—	1.8	0.006	0.75	0.0	0.05	13.30	0.00	2.192	6.75	0.00	2.0	98.0	0.0	1.11	0.78	0.77	3.19	1.8	0.003	0.58	0.0	0.04	15.29	0.00	2.518	4.61	1.43	2.0	98.0	0.0	1.47	0.34	0.79	0.80	3.27	8931	1139	6	0	1	0	0	logfile
✔	7XA3	33086	2024-09-25	2022-03-17	2.9	2.18	—	2.1	0.005	0.85	0.0	0.05	7.87	0.01	2.250	4.13	0.00	2.5	97.5	0.0	0.60	0.75	0.74	3.21	1.8	0.003	0.62	0.0	0.04	14.02	0.00	2.522	7.37	3.23	3.1	96.9	0.0	1.60	0.58	0.78	0.78	2.92	9591	1220	6	0	0	0	0	logfile
✔	8G1i	29671	2024-09-26	2023-02-02	3.12	2.20	3.26	2.0	0.003	0.64	0.0	0.04	21.47	0.01	1.975	7.71	1.72	6.5	93.5	0.0	-1.85	0.75	0.77	2.21	1.8	0.002	0.55	0.0	0.04	21.19	0.00	2.500	4.01	2.84	4.8	95.2	0.0	-0.53	1.14	0.75	0.79	2.00	13613	1298	4	142	0	0	0	logfile

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