Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iQF	35660	2024-09-27	2023-03-16	4.6	4.96	4.72	4.5	0.003	0.63	0.0	0.00	4.93	0.00	1.995	4.78	0.00	4.2	95.8	0.0	-0.27	0.79	0.61	—	4.5	0.004	0.89	0.0	0.00	5.92	0.00	2.332	1.74	0.00	18.1	81.9	0.0	-2.88	3.20	0.82	0.65	—	9072	2268	10	0	0	0	0	logfile
✔	6oEF	20020	2024-09-24	2019-03-27	3.8	3.98	—	3.8	0.007	1.67	0.0	0.07	11.76	0.01	2.376	3.96	0.00	0.0	0.0	0.0	—	0.47	0.78	—	3.8	0.006	1.19	0.0	0.05	5.93	0.00	2.354	3.26	0.00	0.0	0.0	0.0	—	0.58	0.49	0.80	—	51240	0	14	0	10248	0	0	logfile
✔	7JG6	22312	2024-09-28	2020-07-18	3.7	2.39	3.79	2.2	0.008	1.40	0.0	0.00	6.55	0.01	2.433	0.00	0.00	2.9	97.0	0.1	-0.59	0.62	0.54	—	2.3	0.004	0.91	0.0	0.00	6.00	0.00	2.539	0.24	0.00	11.6	88.4	0.0	-1.02	1.66	0.71	0.69	—	19320	4819	20	0	11	0	0	logfile
✔	6TNG	10532	2024-09-24	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	11.35	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.004	0.82	0.0	0.00	6.03	0.00	2.495	2.12	0.00	19.3	80.6	0.1	-2.96	0.38	0.76	0.71	—	8240	2060	2	0	0	0	0	logfile
✔	7TKG	25968	2024-09-28	2022-01-17	4.5	7.60	4.79	4.2	0.019	2.20	0.0	0.00	6.95	0.01	2.361	0.08	0.00	4.3	94.2	1.5	-0.60	0.58	0.61	—	4.2	0.005	0.96	0.0	0.00	6.06	0.00	1.985	5.20	0.00	12.6	87.2	0.3	-1.23	1.59	0.80	0.81	—	20228	5056	27	0	0	0	0	logfile
✔	6LHW	0901	2024-09-26	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.6	0.008	1.28	0.0	0.04	6.20	0.00	2.244	9.56	0.00	0.0	0.0	0.0	—	2.92	0.85	0.76	—	7644	0	3	0	1541	0	0	logfile
✔	5N8Y	3602	2024-09-29	2017-02-24	4.7	4.76	—	4.7	0.017	2.39	6.0	0.08	7.59	0.01	0.788	16.57	0.00	4.2	94.4	1.4	-1.65	0.65	0.64	—	4.7	0.003	0.81	0.0	0.04	6.20	0.00	2.415	2.67	0.00	10.9	89.1	0.1	-2.27	3.81	0.75	0.80	—	23514	4752	24	0	0	0	0	logfile
✔	7DZW	30915	2024-09-26	2021-01-26	3.45	4.19	3.55	3.3	0.019	2.27	0.0	0.00	4.81	0.01	2.240	2.28	0.00	5.1	93.3	1.6	-1.27	0.44	0.25	—	3.3	0.004	0.95	0.0	0.00	6.22	0.00	2.310	1.46	0.00	17.8	82.1	0.1	-2.66	2.03	0.77	0.74	—	13452	3363	3	0	0	0	0	logfile
✔	7TK8	25960	2024-09-28	2022-01-17	4.7	7.79	12.86	4.4	0.019	2.21	0.0	0.00	6.68	0.01	2.390	0.08	0.00	4.1	94.4	1.5	-0.46	0.60	0.62	—	4.4	0.007	1.07	0.0	0.00	6.23	0.01	2.196	7.82	0.00	10.0	89.7	0.3	-0.44	1.54	0.81	0.81	—	20227	5056	27	0	0	0	0	logfile
✔	6LHV	0900	2024-09-27	2019-12-10	4.59	4.86	—	4.4	0.010	1.38	0.0	0.05	5.37	0.00	1.654	9.63	0.00	0.0	0.0	0.0	—	0.70	0.59	—	4.4	0.010	1.33	0.0	0.04	6.42	0.00	2.267	12.16	0.00	0.0	0.0	0.0	—	3.57	0.84	0.81	—	8456	0	3	0	1707	0	0	logfile
✔	7TJZ	25947	2024-09-28	2022-01-17	4.4	7.00	4.54	4.2	0.019	2.21	0.0	0.00	6.67	0.01	2.384	0.19	0.00	4.2	94.2	1.6	-0.41	0.58	0.63	—	4.2	0.014	1.15	0.0	0.00	6.43	0.01	2.377	5.89	0.00	12.4	87.2	0.3	-1.50	0.78	0.81	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	6YW7	10960	2024-09-23	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	8.08	0.01	2.034	2.17	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	0.98	0.0	0.02	6.48	0.00	2.560	9.51	0.00	11.3	88.6	0.2	-3.41	5.70	0.81	0.74	—	5426	1788	9	0	2	0	0	logfile
✔	7TKo	25976	2024-09-28	2022-01-17	4.8	7.71	5.39	4.4	0.019	2.23	0.0	0.00	6.74	0.01	2.314	0.12	0.00	4.8	93.9	1.4	-0.54	0.62	0.65	—	4.4	0.007	1.06	0.0	0.00	6.51	0.01	2.257	7.86	0.00	13.1	86.7	0.3	-1.00	0.84	0.84	0.82	—	20229	5056	27	0	0	0	0	logfile
✔	7JG7	22313	2024-09-28	2020-07-18	3.5	2.41	3.57	3.4	0.008	1.54	0.0	0.00	6.82	0.01	2.433	0.00	0.00	2.9	96.9	0.1	-0.73	0.63	0.55	—	3.4	0.006	1.07	0.0	0.00	6.56	0.01	2.402	0.76	0.00	12.7	87.2	0.1	-1.22	1.63	0.73	0.71	—	19316	4818	20	0	11	0	0	logfile
✔	8G08	29649	2024-09-28	2023-01-31	2.8	3.66	2.85	3.1	0.005	0.63	0.0	0.23	7.67	0.00	1.824	0.59	0.00	2.4	97.6	0.0	1.01	0.74	0.70	—	3.3	0.006	0.74	0.0	0.03	6.65	0.00	1.693	0.20	0.00	7.4	92.6	0.0	1.41	1.56	0.82	0.81	—	19595	4859	26	0	10	0	0	logfile
✔	7RFP	24444	2024-09-23	2021-07-14	4.4	4.57	—	4.3	0.014	2.06	8.0	0.12	7.12	0.01	1.581	3.60	8.00	9.5	87.5	3.0	-1.46	0.68	0.61	—	4.3	0.004	0.91	0.0	0.04	6.84	0.00	2.423	6.58	0.00	17.2	82.3	0.5	-3.77	1.47	0.81	0.76	—	5532	1114	6	0	0	0	0	logfile
✔	7Z8L	14556	2024-09-27	2022-03-17	4.9	4.50	4.38	4.0	0.012	1.30	0.0	0.09	9.68	0.01	2.296	0.29	0.00	1.2	98.8	0.0	1.37	0.76	0.77	—	4.0	0.004	0.63	0.0	0.04	6.87	0.00	1.809	2.27	0.00	5.1	94.9	0.0	1.52	0.68	0.81	0.84	—	16513	3311	3	0	5	0	0	logfile
✔	7JG8	22314	2024-09-28	2020-07-18	3.3	2.35	3.37	3.3	0.009	1.50	0.0	0.20	9.46	0.01	2.424	0.51	0.00	3.2	96.6	0.2	-1.30	0.62	0.55	—	3.4	0.004	0.87	0.0	0.08	6.87	0.00	2.539	0.28	0.00	9.4	90.5	0.1	-0.57	1.25	0.72	0.71	—	19573	4827	26	0	7	0	0	logfile
✔	7TKQ	25978	2024-09-28	2022-01-17	4.5	7.57	4.53	4.3	0.019	2.21	0.0	0.00	6.72	0.01	2.371	0.08	0.00	4.0	94.5	1.5	-0.48	0.59	0.61	—	4.3	0.007	1.08	0.0	0.00	6.92	0.01	2.255	9.05	0.00	13.6	86.1	0.3	-1.91	0.85	0.82	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	7BZY	30263	2024-09-23	2020-04-29	3.7	5.07	3.67	2.9	0.005	1.03	0.0	0.05	7.60	0.00	2.175	11.89	0.00	15.0	84.6	0.3	-5.26	0.62	0.47	—	3.4	0.005	0.95	0.0	0.05	6.97	0.00	2.400	10.68	0.00	18.7	81.3	0.0	-4.04	1.37	0.85	0.75	—	6169	1260	3	0	0	0	0	logfile

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