Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7E9C	31029	2024-09-29	2021-03-04	3.5	4.28	3.62	4.0	0.003	0.58	0.0	0.03	26.94	0.00	2.221	12.74	0.14	3.3	96.7	0.0	0.16	0.78	0.69	0.28	4.0	0.004	0.67	0.0	0.04	28.45	0.00	2.157	14.61	4.84	4.6	95.4	0.0	0.12	1.64	0.83	0.79	0.15	12338	898	11	260	0	0	0	logfile
✔	7WU7	32823	2024-09-27	2022-02-07	3.85	3.66	4.04	3.8	0.005	0.81	0.0	0.05	14.10	0.00	2.146	18.27	0.01	5.3	94.7	0.1	-1.14	0.70	0.65	0.47	3.8	0.003	0.83	0.0	0.05	16.58	0.00	2.346	16.06	2.70	5.5	94.5	0.0	-0.93	0.53	0.70	0.67	0.16	67031	8727	26	0	4	0	0	logfile
✔	5VA2	8651	2024-09-27	2017-03-24	3.8	5.28	—	4.3	0.008	1.08	0.0	0.06	12.47	0.00	1.607	11.18	1.08	7.7	90.7	1.6	-3.86	0.64	0.74	-0.32	4.3	0.003	0.99	0.0	0.05	16.35	0.00	2.508	17.86	2.44	4.3	95.3	0.4	-1.38	1.93	0.67	0.83	0.16	17576	2232	4	0	0	0	0	logfile
✔	3JAD	6344	2024-09-26	2015-06-08	3.9	2.16	—	3.8	0.008	1.33	0.0	0.06	10.08	0.00	2.250	16.87	0.43	2.7	97.3	0.0	-2.13	0.68	0.72	0.33	3.0	0.003	0.78	0.0	0.04	12.57	0.00	2.472	12.79	2.16	3.8	96.2	0.0	0.82	0.71	0.70	0.77	0.16	12705	1685	15	0	15	0	0	logfile
✔	8WJQ	37589	2024-09-23	2023-09-26	3.8	4.16	3.84	4.3	0.010	1.47	1.0	0.07	15.62	0.02	2.216	9.81	0.48	3.6	96.4	0.0	0.80	0.41	0.60	0.46	4.3	0.003	0.75	0.0	0.04	17.46	0.00	2.488	8.45	3.38	3.0	97.0	0.0	1.78	1.20	0.42	0.62	0.17	3999	530	2	0	1	0	0	logfile
✔	8WLL	37623	2024-09-23	2023-09-30	3.74	3.82	3.77	3.9	0.024	1.06	0.0	0.10	13.07	0.01	2.238	10.14	0.00	2.9	97.1	0.0	0.58	0.50	0.76	1.39	3.8	0.004	0.91	0.0	0.05	15.79	0.00	2.553	13.35	4.68	2.9	97.1	0.0	0.73	0.51	0.49	0.77	0.17	2815	389	2	0	1	0	0	logfile
✔	8T23	40979	2024-09-24	2023-06-05	3.87	4.12	4.24	7.5	0.005	1.00	0.0	0.05	19.22	0.01	2.136	16.85	0.59	11.9	88.1	0.0	-3.06	0.59	0.48	0.19	7.5	0.003	0.80	0.0	0.05	18.15	0.01	2.558	14.86	4.98	11.4	88.6	0.0	-2.36	0.88	0.62	0.54	0.19	6451	781	6	0	6	0	0	logfile
✔	8GWB	34308	2024-09-29	2022-09-16	2.75	2.95	2.85	25.0	0.009	1.07	1.0	0.05	17.30	0.01	1.556	16.84	2.25	7.5	92.3	0.2	-2.40	0.29	0.01	0.23	25.0	0.003	0.82	0.0	0.04	18.12	0.01	2.100	16.91	2.65	7.8	92.1	0.1	-2.05	1.66	0.36	0.17	0.19	21879	2655	16	54	10	7	0	logfile
✔	7KY5	23068	2024-09-26	2020-12-07	3.98	4.52	—	4.3	0.004	1.09	0.0	0.05	13.51	0.01	2.200	16.72	0.07	6.6	93.4	0.0	-1.06	0.72	0.75	0.32	4.3	0.004	0.74	0.0	0.05	15.28	0.00	2.368	17.57	3.04	7.7	92.3	0.0	-1.12	1.04	0.73	0.78	0.19	12483	1534	6	0	15	0	0	logfile
✔	8U1L	41816	2024-09-26	2023-09-01	3.7	5.25	3.73	3.0	0.005	1.07	0.0	0.05	14.74	0.00	1.947	14.42	0.00	2.2	97.8	0.0	0.39	0.91	0.70	0.05	2.9	0.005	0.75	0.0	0.04	16.02	0.00	1.910	19.02	2.52	3.8	96.2	0.0	-0.07	0.57	0.93	0.81	0.19	12595	1543	6	0	4	0	0	logfile
✔	7W0C	32238	2024-09-26	2021-11-18	3.93	4.02	—	3.8	0.002	0.55	0.0	0.04	16.22	0.00	2.105	14.31	0.07	4.2	95.8	0.1	-0.14	0.86	0.73	0.17	3.8	0.003	0.64	0.0	0.04	17.31	0.00	2.504	12.13	1.64	4.8	95.1	0.1	0.24	0.49	0.86	0.74	0.20	13663	1492	5	72	2	0	0	logfile
✔	7RTT	24688	2024-09-24	2021-08-15	3.5	3.91	—	3.9	0.003	0.63	0.0	0.04	20.57	0.00	2.239	5.02	0.00	3.6	96.4	0.0	2.65	0.60	0.73	1.03	3.9	0.002	0.55	0.0	0.03	15.50	0.00	2.374	5.10	0.75	4.1	95.9	0.0	3.98	1.65	0.60	0.73	0.21	6268	791	8	0	14	0	0	logfile
✔	7YG0	33803	2024-09-26	2022-07-09	3.75	4.38	3.91	6.5	0.005	0.93	1.0	0.05	14.36	0.00	2.222	25.32	1.19	8.0	92.0	0.0	-1.07	0.59	0.54	0.45	6.5	0.004	0.95	0.0	0.05	16.20	0.00	2.467	23.24	2.80	5.0	94.9	0.1	-0.78	2.16	0.67	0.73	0.21	13336	1708	2	0	0	0	0	logfile
✔	8oST	17164	2024-09-24	2023-04-20	3.69	3.89	3.67	3.9	0.002	0.52	0.0	0.04	22.67	0.01	2.203	5.42	0.27	1.2	98.8	0.0	0.21	0.55	0.52	0.26	3.9	0.003	0.54	0.0	0.04	22.35	0.00	2.304	5.64	2.13	2.8	97.2	0.0	0.20	1.45	0.61	0.62	0.23	8955	432	4	69	2	0	4058	logfile
✔	7NZM	12665	2024-09-25	2021-03-24	3.96	6.56	4.22	4.2	0.007	1.12	0.0	0.06	14.32	0.01	1.774	11.10	0.00	3.8	96.2	0.0	-1.56	0.77	0.51	-0.04	4.3	0.003	0.77	0.0	0.04	15.07	0.00	2.079	11.88	0.42	2.4	97.6	0.0	0.57	1.48	0.95	0.85	0.23	9109	1157	8	0	4	0	0	logfile
✔	9C0D	45080	2024-09-25	2024-05-25	3.97	4.23	4.01	4.0	0.003	0.56	0.0	0.04	13.21	0.00	2.222	10.41	0.08	3.3	96.5	0.2	1.73	0.82	0.75	0.31	4.0	0.003	0.54	0.0	0.04	14.61	0.00	2.598	6.61	0.95	3.5	96.5	0.0	1.55	1.25	0.83	0.82	0.24	54530	7336	14	0	0	0	0	logfile
✔	8CSA	26961	2024-09-29	2022-05-12	3.84	4.24	3.87	3.9	0.012	1.75	3.0	0.09	13.74	0.02	2.527	0.19	1.18	6.0	93.8	0.2	-1.46	0.82	0.78	0.63	3.9	0.004	0.67	0.0	0.04	14.95	0.00	2.359	9.36	1.98	3.8	96.2	0.0	-0.10	1.66	0.83	0.79	0.25	23442	3003	3	0	0	0	0	logfile
✔	6H5i	0140	2024-09-24	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.64	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.8	0.004	0.76	0.0	0.04	14.94	0.00	2.349	13.32	1.45	4.3	95.7	0.0	1.08	1.21	0.37	0.24	0.26	43900	5392	26	0	0	0	0	logfile
✔	7RYE	24735	2024-09-28	2021-08-25	3.9	4.10	—	4.0	0.003	0.65	0.0	0.04	14.57	0.00	2.090	14.13	0.00	3.7	96.3	0.0	1.07	0.76	0.69	-0.18	4.0	0.003	0.71	0.0	0.04	17.95	0.00	2.435	13.23	3.94	3.9	96.1	0.0	1.35	1.10	0.81	0.81	0.26	19708	2535	24	0	0	0	0	logfile
✔	6MU2	9244	2024-09-24	2018-10-22	3.9	4.63	—	4.5	0.012	2.05	157.0	0.17	15.10	0.01	1.078	53.92	14.66	11.0	87.3	1.7	-1.58	0.70	0.68	0.40	4.5	0.005	1.01	1.0	0.06	16.08	0.00	2.390	21.65	8.93	11.0	88.7	0.4	-0.24	0.96	0.72	0.72	0.27	51404	8680	4	0	0	0	0	logfile

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