Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GYW	34378	2024-09-23	2022-09-24	3.9	3.93	3.77	4.0	0.008	1.46	0.0	0.08	16.78	0.02	2.008	6.48	0.30	0.8	99.2	0.0	1.24	0.46	0.73	1.92	4.0	0.004	0.72	0.0	0.04	16.77	0.00	1.174	11.48	4.23	1.3	98.7	0.0	2.54	1.28	0.49	0.75	0.74	6076	760	4	0	6	0	0	logfile
✔	8oiF	16891	2024-09-24	2023-03-22	3.5	3.41	3.30	3.4	0.003	0.59	0.0	0.04	13.83	0.01	2.246	6.05	0.00	6.8	93.2	0.0	-0.42	0.75	0.81	3.19	3.3	0.002	0.58	0.0	0.04	14.24	0.00	1.174	5.11	1.82	5.4	94.6	0.0	0.04	0.85	0.75	0.81	2.57	6589	934	4	0	1	0	0	logfile
✔	8SHF	40486	2024-09-28	2023-04-14	3.0	3.54	3.05	3.3	0.004	0.55	0.0	0.04	14.21	0.00	1.934	7.12	0.00	3.3	96.7	0.0	1.57	0.85	0.88	2.62	3.3	0.002	0.59	0.0	0.04	15.54	0.00	1.194	6.41	0.79	3.4	96.6	0.0	1.72	0.28	0.85	0.89	2.34	67730	8797	50	0	48	19	0	logfile
✔	8UZ1	42830	2024-09-24	2023-11-14	3.6	3.84	3.63	3.9	0.012	1.91	30.0	0.11	15.16	0.01	1.829	0.04	1.34	4.9	94.9	0.2	-1.77	0.76	0.83	3.08	3.9	0.004	0.65	0.0	0.04	15.74	0.00	1.197	4.34	1.63	3.7	96.3	0.0	-0.16	1.52	0.70	0.81	1.95	52410	3348	18	0	27	0	25941	logfile
✔	7KSo	23021	2024-09-26	2020-11-23	3.9	4.08	—	4.0	0.004	0.73	1.0	0.05	11.73	0.00	2.151	3.83	0.29	4.7	95.3	0.0	-3.99	0.68	0.74	1.12	4.0	0.005	0.74	0.0	0.05	15.48	0.00	1.202	10.59	2.06	5.5	94.5	0.0	-1.33	0.79	0.73	0.81	1.77	13075	1690	8	0	8	0	0	logfile
✔	7XHA	33192	2024-09-25	2022-04-07	3.35	3.57	3.29	3.5	0.008	1.06	4.0	0.07	11.41	0.01	1.860	7.27	0.28	4.7	95.2	0.1	-3.53	0.69	0.78	2.40	3.5	0.003	0.64	0.0	0.04	15.17	0.00	1.206	7.27	2.22	3.8	96.2	0.0	0.76	0.62	0.72	0.82	1.86	10102	1270	5	0	3	0	0	logfile
✔	7NKU	12448	2024-09-30	2021-02-19	3.4	3.03	—	3.1	0.008	0.94	0.0	0.05	15.33	0.01	1.986	17.36	0.00	9.2	90.8	0.0	-0.63	0.74	0.77	1.90	3.1	0.003	0.78	0.0	0.05	17.78	0.01	1.217	13.10	3.26	6.8	93.2	0.0	0.78	0.66	0.73	0.79	1.21	25332	3252	12	0	18	0	0	logfile
✔	6oAA	0666	2024-09-28	2019-03-15	4.1	4.22	4.19	4.2	0.006	1.06	1.0	0.05	16.65	0.01	1.317	13.43	0.34	8.3	91.5	0.3	-5.52	0.63	0.70	—	4.2	0.003	0.83	0.0	0.05	15.62	0.00	1.217	11.20	0.05	9.4	90.6	0.1	-2.13	0.85	0.66	0.75	—	19546	2494	10	0	14	0	0	logfile
✔	8SFo	40446	2024-09-26	2023-04-11	3.3	4.59	3.46	3.8	0.004	0.86	0.0	0.06	20.07	0.01	2.057	3.67	0.18	2.5	97.5	0.0	-0.41	0.88	0.80	2.87	3.8	0.003	0.58	0.0	0.04	20.15	0.00	1.224	7.33	0.99	2.8	97.2	0.0	2.38	1.05	0.93	0.87	2.67	12606	1240	5	119	2	0	0	logfile
✔	8oo9	17007	2024-09-23	2023-04-04	3.2	2.32	3.17	3.1	0.010	1.70	0.0	0.06	20.61	0.01	1.879	4.84	0.00	2.3	97.7	0.0	-2.21	0.81	0.78	3.72	3.1	0.004	1.04	0.0	0.04	22.24	0.00	1.232	6.46	1.76	2.6	97.4	0.0	-0.67	1.37	0.83	0.81	2.20	4516	439	4	42	3	0	0	logfile
✔	7YLW	33919	2024-09-28	2022-07-27	3.39	2.63	3.52	3.0	0.008	1.04	31.0	0.07	11.34	0.01	1.306	5.69	1.53	4.1	95.5	0.4	-3.65	0.69	0.68	0.71	3.0	0.003	0.80	0.0	0.04	16.85	0.00	1.257	11.90	4.20	4.2	95.8	0.1	-0.14	0.97	0.77	0.78	1.34	70338	9105	49	0	47	14	0	logfile
✔	7N73	24218	2024-09-24	2021-06-09	2.9	3.46	2.99	3.3	0.006	1.27	0.0	0.06	13.00	0.00	1.850	7.76	0.00	2.6	97.4	0.0	1.31	0.71	0.85	2.86	3.3	0.004	0.88	0.0	0.04	14.35	0.00	1.263	4.80	1.57	2.3	97.7	0.0	2.07	0.32	0.69	0.84	2.17	7866	1036	2	0	6	3	0	logfile
✔	6CM3	7516	2024-09-30	2018-03-02	3.54	3.68	—	3.6	0.010	1.08	0.0	0.07	12.58	0.01	2.044	4.95	0.11	9.1	90.9	0.0	-4.10	0.77	0.82	2.58	3.6	0.003	0.81	1.0	0.05	14.83	0.00	1.272	9.71	2.51	5.4	94.6	0.0	-1.46	0.78	0.76	0.83	2.16	25455	3177	39	0	90	0	0	logfile
✔	6oAB	20000	2024-09-28	2019-03-15	3.6	3.87	3.73	3.8	0.006	1.07	1.0	0.05	16.24	0.01	1.245	9.38	0.34	7.7	92.1	0.2	-5.58	0.68	0.68	0.81	3.7	0.003	0.84	0.0	0.05	17.38	0.00	1.274	10.20	2.14	8.2	91.7	0.0	-1.72	1.74	0.72	0.78	0.94	19690	2537	11	0	18	0	0	logfile
✔	7ET1	31294	2024-09-28	2021-05-12	2.6	3.09	2.69	3.0	0.007	1.25	0.0	0.05	17.05	0.01	1.936	9.51	0.19	2.7	97.3	0.0	0.57	0.76	0.87	2.95	3.0	0.002	0.78	0.0	0.04	16.64	0.00	1.282	5.38	1.03	1.8	98.2	0.0	1.90	1.03	0.73	0.89	2.76	10015	1249	5	0	14	1	0	logfile
✔	7X3J	32989	2024-09-26	2022-03-01	4.2	3.84	4.27	3.9	0.004	0.86	1.0	0.05	14.40	0.00	1.136	5.37	0.10	3.2	96.8	0.0	-5.53	0.59	0.53	—	3.8	0.003	0.71	0.0	0.04	14.66	0.00	1.284	11.72	0.04	4.4	95.6	0.0	-0.84	2.80	0.61	0.57	—	63188	8209	32	0	16	0	0	logfile
✔	7W7T	32347	2024-09-24	2021-12-06	3.4	2.93	3.31	3.4	0.003	0.63	0.0	0.04	13.40	0.00	2.069	10.32	0.11	2.9	97.1	0.0	0.71	0.57	0.70	1.45	3.4	0.002	0.61	0.0	0.04	15.52	0.00	1.288	8.24	1.26	3.1	96.9	0.0	0.36	0.49	0.58	0.71	0.82	7903	1021	2	0	4	0	0	logfile
✔	6NJo	9390	2024-09-28	2019-01-03	3.34	3.42	—	3.4	0.010	1.20	1.0	0.07	11.62	0.01	1.361	5.89	0.49	7.1	92.9	0.0	-4.27	0.80	0.83	3.46	3.4	0.004	0.72	0.0	0.05	14.50	0.00	1.288	7.37	2.65	5.6	94.4	0.0	-1.33	1.13	0.83	0.85	2.19	19090	2466	14	0	12	20	0	logfile
✔	8SHP	40491	2024-09-28	2023-04-14	3.0	3.53	3.00	3.3	0.005	0.55	0.0	0.04	14.05	0.00	1.905	7.29	0.00	3.7	96.3	0.0	1.58	0.85	0.88	2.71	3.3	0.003	0.59	0.0	0.04	15.45	0.00	1.293	6.19	0.75	3.4	96.6	0.0	1.65	0.29	0.86	0.89	2.36	68049	8834	50	0	48	19	0	logfile
✔	6TD5	10463	2024-09-24	2019-11-07	3.2	3.25	3.20	3.2	0.006	0.95	0.0	0.05	10.27	0.01	2.109	4.65	0.15	4.4	95.6	0.0	-4.67	0.75	0.83	3.66	3.2	0.004	0.72	2.0	0.04	15.77	0.00	1.305	7.25	2.81	3.9	96.1	0.0	-0.30	1.14	0.78	0.87	2.87	49408	6360	34	0	8	0	0	logfile

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