Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PBD	13290	2024-09-27	2021-08-02	3.04	3.81	3.11	3.5	0.005	0.76	0.0	0.10	16.57	0.00	2.062	4.44	0.00	3.8	96.2	0.0	0.14	0.77	0.82	3.43	3.5	0.003	0.61	0.0	0.04	14.17	0.00	2.461	5.01	1.39	3.2	96.8	0.1	0.91	0.41	0.78	0.85	3.13	14822	1784	15	0	25	0	0	logfile
✔	7PKG	13471	2024-09-27	2021-08-25	3.3	2.97	3.19	3.2	0.005	0.85	0.0	0.17	13.68	0.01	2.156	4.65	0.00	5.5	94.5	0.0	-1.10	0.69	0.84	5.60	3.2	0.003	0.76	0.0	0.17	14.39	0.00	2.218	2.91	0.33	3.4	96.6	0.0	-0.73	0.57	0.70	0.86	4.78	16155	1030	15	0	10	5	7980	logfile
✔	7YCG	33738	2024-09-24	2022-07-01	3.18	4.71	3.37	3.5	0.002	0.50	0.0	0.03	24.46	0.00	1.893	15.83	0.00	0.0	0.0	0.0	—	0.94	0.84	—	3.5	0.007	0.68	0.0	0.04	24.51	0.00	1.848	29.82	0.00	0.0	0.0	0.0	—	0.32	0.95	0.88	—	8661	0	3	404	4	0	0	logfile
✔	7PQX	13606	2024-09-25	2021-09-20	3.08	3.48	—	3.4	0.010	1.11	0.0	0.06	14.20	0.01	2.296	4.37	0.00	4.3	95.7	0.0	-2.13	0.69	0.85	2.92	3.4	0.003	0.64	0.0	0.04	15.65	0.00	2.518	7.66	2.08	3.0	97.0	0.0	1.36	0.93	0.69	0.87	2.56	9032	1160	2	0	0	0	0	logfile
✔	7LBE	23252	2024-09-26	2021-01-07	2.9	3.31	—	3.2	0.003	0.51	0.0	0.04	13.44	0.00	2.200	3.47	0.00	2.8	97.2	0.0	1.20	0.69	0.82	3.12	3.2	0.004	0.63	0.0	0.04	15.55	0.00	2.325	5.97	1.98	3.1	96.9	0.0	0.76	0.45	0.70	0.85	2.87	13511	1653	13	0	27	0	0	logfile
✔	7QH2	13960	2024-09-27	2021-12-10	2.43	3.08	—	2.8	0.008	1.01	0.0	0.06	16.28	0.01	1.674	6.99	2.88	3.3	96.4	0.2	-4.15	0.84	0.85	4.97	2.8	0.003	0.59	0.0	0.04	15.51	0.00	2.023	5.89	1.11	2.6	97.3	0.1	0.37	0.47	0.84	0.86	4.30	16808	2138	14	0	8	2	0	logfile
✔	7RE2	24431	2024-09-28	2021-07-12	3.17	3.46	—	3.4	0.007	0.65	0.0	0.14	16.68	0.00	1.932	8.83	2.42	5.0	95.0	0.0	-0.57	0.77	0.83	3.11	3.4	0.003	0.56	0.0	0.04	16.12	0.00	2.010	6.84	1.95	4.0	96.0	0.0	0.25	0.35	0.77	0.85	2.48	17096	1963	9	71	13	0	0	logfile
✔	7RNN	24580	2024-09-23	2021-07-29	2.86	2.05	—	3.2	0.008	0.80	0.0	0.14	14.96	0.00	1.929	6.74	0.55	3.4	96.6	0.0	-1.11	0.50	0.76	5.00	3.2	0.003	0.63	0.0	0.04	15.51	0.00	2.631	4.10	1.09	2.2	97.8	0.0	0.49	0.97	0.49	0.87	4.04	4000	540	3	0	2	0	0	logfile
✔	7W6S	32334	2024-09-28	2021-12-02	2.8	3.21	—	3.2	0.005	0.68	0.0	0.04	13.60	0.00	2.191	9.61	0.18	6.3	93.7	0.0	-3.03	0.69	0.83	2.38	3.2	0.004	0.80	0.0	0.04	16.38	0.00	2.302	7.50	2.72	4.2	95.8	0.0	0.72	0.69	0.67	0.83	1.67	20268	2508	8	0	0	0	0	logfile
✔	7PRU	13610	2024-09-25	2021-09-22	3.2	3.55	3.24	3.5	0.010	1.05	0.0	0.06	14.87	0.01	2.128	9.65	0.00	6.8	93.2	0.0	-2.01	0.67	0.83	2.06	3.5	0.003	0.64	0.0	0.04	16.34	0.00	2.561	9.38	2.28	4.9	95.1	0.0	0.77	1.21	0.63	0.82	1.76	9116	1164	4	0	2	0	0	logfile
✔	8CSX	26974	2024-09-25	2022-05-13	2.4	2.08	2.44	2.1	0.006	0.79	1.0	0.05	15.46	0.01	2.208	4.92	3.86	1.7	98.2	0.1	1.76	0.69	0.88	5.16	2.1	0.005	0.66	0.0	0.04	15.22	0.00	2.535	6.41	3.11	1.9	98.1	0.0	2.15	0.35	0.69	0.88	4.73	9116	1158	8	0	4	150	0	logfile
✔	7XSS	33433	2024-09-27	2022-05-15	3.2	2.32	3.17	2.1	0.003	0.61	0.0	0.04	19.02	0.01	2.143	8.25	0.59	5.7	94.2	0.1	-0.24	0.78	0.79	2.22	2.1	0.003	0.59	0.0	0.04	19.39	0.00	2.483	6.27	3.70	5.9	94.1	0.0	0.07	1.07	0.78	0.80	2.37	16847	1942	5	54	4	0	0	logfile
✔	8CY6	27068	2024-09-25	2022-05-23	3.2	3.98	3.39	3.6	0.003	0.50	0.0	0.04	10.43	0.00	2.024	7.15	0.16	3.0	96.8	0.2	0.26	0.82	0.78	2.02	3.6	0.004	0.51	0.0	0.04	11.66	0.00	2.352	3.53	0.51	4.2	95.7	0.1	-0.12	0.38	0.83	0.79	2.04	56077	3666	6	0	0	0	27658	logfile
✔	6ZHY	11221	2024-09-24	2020-06-24	3.0	3.57	2.97	3.1	0.005	0.91	0.0	0.06	27.25	0.01	2.316	3.82	0.21	1.5	98.5	0.0	0.65	0.90	0.87	4.24	3.1	0.004	0.62	0.0	0.03	28.62	0.00	2.421	7.96	2.35	1.6	98.4	0.0	3.37	0.88	0.91	0.90	2.95	8999	562	9	220	0	0	0	logfile
✔	7XYB	33516	2024-09-29	2022-06-01	3.7	4.48	3.71	3.3	0.005	0.75	1.0	0.05	16.73	0.00	1.956	17.39	0.62	4.8	95.0	0.2	-0.49	0.87	0.82	1.06	3.4	0.003	0.65	0.0	0.04	16.64	0.00	1.965	11.73	2.83	5.1	94.8	0.1	0.45	1.02	0.87	0.83	0.71	22525	3187	10	65	1	0	0	logfile
✔	7WXG	32878	2024-09-23	2022-02-14	4.2	4.21	3.56	4.2	0.012	1.07	0.0	0.05	15.42	0.00	2.184	12.87	0.29	10.7	89.3	0.0	-5.16	0.51	0.80	—	4.2	0.003	0.72	0.0	0.04	14.58	0.00	2.359	8.78	0.00	6.3	93.7	0.0	-0.61	1.25	0.51	0.79	—	3295	430	2	0	1	0	0	logfile
✔	7SYA	25521	2024-09-24	2021-11-24	3.5	4.86	3.47	3.3	0.003	0.69	0.0	0.04	14.93	0.00	2.087	15.81	0.11	16.5	82.7	0.8	-2.66	0.79	0.73	0.85	3.3	0.003	0.77	0.0	0.04	16.58	0.00	2.402	14.82	1.10	16.6	82.7	0.7	-2.32	0.98	0.79	0.74	0.97	49860	6180	12	0	0	0	0	logfile
✔	3JAD	6344	2024-09-26	2015-06-08	3.9	2.16	—	3.8	0.008	1.33	0.0	0.06	10.08	0.00	2.250	16.87	0.43	2.7	97.3	0.0	-2.13	0.68	0.72	0.33	3.0	0.003	0.78	0.0	0.04	12.57	0.00	2.472	12.79	2.16	3.8	96.2	0.0	0.82	0.71	0.70	0.77	0.16	12705	1685	15	0	15	0	0	logfile
✔	6ZHX	11220	2024-09-26	2020-06-24	2.5	3.01	2.43	2.7	0.005	0.92	0.0	0.06	26.79	0.01	2.203	2.63	0.46	1.0	99.0	0.0	0.63	0.88	0.90	5.80	2.7	0.004	0.60	0.0	0.03	28.32	0.00	2.508	4.49	1.54	0.9	99.1	0.0	2.94	0.45	0.89	0.92	4.61	12313	784	22	290	0	146	0	logfile
✔	7MEi	23789	2024-09-28	2021-04-06	3.54	5.09	—	3.4	0.005	0.83	1.0	0.05	16.97	0.00	1.242	22.02	0.07	11.3	88.6	0.1	-1.69	0.88	0.69	0.86	2.7	0.003	0.74	0.0	0.04	18.34	0.00	1.939	12.54	1.65	9.4	90.6	0.0	-1.01	1.16	0.91	0.84	0.67	69281	8283	43	179	20	0	0	logfile

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