Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TJX	41313	2024-09-24	2023-07-24	2.44	3.10	2.65	2.9	0.006	0.64	0.0	0.04	24.81	0.01	1.872	12.24	0.00	0.0	0.0	0.0	—	0.85	0.85	—	2.9	0.007	0.62	0.0	0.04	24.02	0.01	1.836	9.60	0.00	0.0	0.0	0.0	—	0.82	0.84	0.86	—	7839	0	2	365	27	0	0	logfile
✔	8TJU	41311	2024-09-25	2023-07-24	3.46	4.75	3.48	3.4	0.006	0.67	0.0	0.04	25.59	0.01	1.874	27.33	0.00	0.0	0.0	0.0	—	0.93	0.86	—	3.4	0.008	0.71	0.0	0.04	24.74	0.01	1.794	24.14	0.00	0.0	0.0	0.0	—	0.40	0.94	0.91	—	8771	0	2	409	27	0	0	logfile
✔	6X64	22069	2024-09-27	2020-05-27	3.7	4.01	—	3.7	0.008	1.34	0.0	0.05	9.32	0.01	2.584	0.78	0.00	0.0	0.0	0.0	—	0.68	0.84	—	3.7	0.009	1.20	0.0	0.05	5.38	0.00	2.405	1.28	0.00	0.0	0.0	0.0	—	1.70	0.69	0.86	—	15840	0	36	0	3168	0	0	logfile
✔	7XD4	33135	2024-09-24	2022-03-26	3.89	4.13	—	3.8	0.003	0.59	0.0	0.03	23.99	0.00	1.880	1.73	0.00	0.0	0.0	0.0	—	0.85	0.73	—	3.8	0.007	0.81	0.0	0.04	24.53	0.01	1.749	16.18	0.00	0.0	0.0	0.0	—	1.91	0.87	0.79	—	9062	0	2	423	28	0	0	logfile
✔	6WKX	21812	2024-09-26	2020-04-17	4.2	4.31	—	4.2	0.006	0.59	0.0	0.04	15.11	0.00	2.298	2.52	0.00	0.0	100.0	0.0	-3.67	0.77	0.90	—	4.2	0.004	0.70	0.0	0.04	16.87	0.00	2.498	5.84	0.17	0.0	100.0	0.0	4.63	1.00	0.77	0.88	—	12915	1575	105	0	0	0	0	logfile
✔	6oEF	20020	2024-09-24	2019-03-27	3.8	3.98	—	3.8	0.007	1.67	0.0	0.07	11.76	0.01	2.376	3.96	0.00	0.0	0.0	0.0	—	0.47	0.78	—	3.8	0.006	1.19	0.0	0.05	5.93	0.00	2.354	3.26	0.00	0.0	0.0	0.0	—	0.58	0.49	0.80	—	51240	0	14	0	10248	0	0	logfile
✔	7PTQ	13633	2024-09-27	2021-09-27	4.08	6.47	4.22	4.0	0.005	0.78	0.0	0.04	23.49	0.00	1.983	0.92	0.00	0.0	0.0	0.0	—	0.91	0.80	—	4.0	0.006	0.70	0.0	0.04	26.94	0.00	2.105	38.60	0.00	0.0	0.0	0.0	—	2.74	0.96	0.94	—	17434	0	1	544	0	0	5847	logfile
✔	8iXJ	35793	2024-09-26	2023-04-01	3.1	3.03	3.07	3.1	0.012	1.45	0.0	0.09	10.47	0.00	2.412	3.04	0.00	0.0	100.0	0.0	3.48	0.67	0.86	2.90	3.1	0.002	0.32	0.0	0.03	13.78	0.00	2.396	2.00	0.74	0.0	100.0	0.0	7.19	1.02	0.65	0.85	0.95	13760	1840	40	0	0	0	0	logfile
✔	7SAM	24952	2024-09-23	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	23.50	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.89	0.0	0.04	28.04	0.01	1.982	71.15	0.00	0.0	0.0	0.0	—	5.48	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	6oDJ	20021	2024-09-30	2019-03-26	3.5	3.75	—	3.7	0.009	1.50	0.0	0.07	11.32	0.01	2.438	2.03	0.00	0.0	0.0	0.0	—	0.81	0.81	—	3.7	0.012	1.74	0.0	0.07	8.02	0.00	2.306	2.41	0.00	0.0	0.0	0.0	—	0.61	0.82	0.83	—	25415	0	17	0	5083	0	0	logfile
✔	7YC8	33736	2024-09-24	2022-07-01	4.14	7.25	4.31	4.1	0.002	0.51	0.0	0.02	25.12	0.00	2.079	18.05	0.00	0.0	0.0	0.0	—	0.96	0.87	—	4.1	0.006	0.82	0.0	0.04	27.70	0.01	1.971	60.55	0.00	0.0	0.0	0.0	—	1.25	0.97	0.89	—	8335	0	2	388	1	0	0	logfile
✔	6o1o	0454	2024-09-27	2019-02-21	3.8	4.00	—	3.6	0.008	1.55	0.0	0.07	18.29	0.01	2.295	4.58	0.00	0.0	0.0	0.0	—	0.72	0.70	—	3.6	0.012	1.72	0.0	0.07	16.94	0.00	2.206	9.94	0.00	0.0	0.0	0.0	—	1.31	0.78	0.76	—	15193	0	14	66	2757	0	0	logfile
✔	8HD7	34671	2024-09-24	2022-11-03	3.52	3.99	3.58	3.3	0.003	0.60	0.0	0.03	23.66	0.00	1.927	2.96	0.00	0.0	0.0	0.0	—	0.89	0.77	—	3.3	0.006	0.74	0.0	0.04	23.90	0.01	1.822	12.81	0.00	0.0	0.0	0.0	—	1.70	0.91	0.84	—	8983	0	2	419	28	0	0	logfile
✔	7PTL	13630	2024-09-29	2021-09-27	4.9	10.06	4.95	—	0.005	1.01	0.0	0.06	23.55	0.01	2.401	0.61	0.00	0.0	0.0	0.0	—	0.88	0.79	—	—	0.007	0.90	0.0	0.04	27.87	0.01	1.723	77.38	0.00	0.0	0.0	0.0	—	3.53	0.91	0.92	—	23080	0	1	720	0	0	7743	logfile
✔	7XD3	33134	2024-09-24	2022-03-26	4.05	4.16	—	3.8	0.003	0.62	0.0	0.04	24.05	0.00	1.960	1.21	0.00	0.0	0.0	0.0	—	0.85	0.74	—	3.9	0.007	0.77	0.0	0.04	24.20	0.01	1.697	13.89	0.00	0.0	0.0	0.0	—	1.82	0.87	0.82	—	9062	0	2	423	28	0	0	logfile
✔	8PPo	17806	2024-09-23	2023-07-07	2.0	2.30	1.95	2.2	0.008	1.20	1.0	0.07	13.41	0.01	2.625	0.29	0.00	6.7	93.3	0.0	0.71	0.58	0.84	6.50	2.2	0.004	0.55	0.0	0.06	13.87	0.00	2.638	0.29	1.04	0.0	100.0	0.0	1.16	0.37	0.50	0.88	5.79	1696	240	16	0	0	0	0	logfile
✔	7UGD	26487	2024-09-23	2022-03-24	2.95	3.61	2.95	3.5	0.002	0.45	0.0	0.04	11.38	0.00	2.005	2.21	0.00	0.7	99.3	0.0	0.34	0.49	0.84	3.05	3.5	0.003	0.55	0.0	0.04	14.56	0.00	2.236	3.96	1.25	0.0	100.0	0.0	3.02	0.47	0.50	0.85	1.70	3079	415	2	0	3	0	0	logfile
✔	6WL1	21815	2024-09-26	2020-04-17	4.0	4.02	—	4.0	0.007	0.81	0.0	0.05	7.85	0.00	2.413	3.17	0.00	0.0	100.0	0.0	-1.08	0.71	0.85	—	4.0	0.004	0.52	0.0	0.04	16.38	0.00	2.657	4.46	4.88	0.0	100.0	0.0	6.13	0.73	0.73	0.86	—	14612	1872	52	0	0	0	0	logfile
✔	6PoM	20416	2024-09-23	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	25.63	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	4.9	0.010	1.26	0.0	0.06	27.15	0.01	1.943	51.03	0.00	0.0	0.0	0.0	—	1.76	0.74	0.79	—	4937	0	2	230	0	0	0	logfile
✔	7RZV	24779	2024-09-23	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.35	0.0	0.03	15.93	0.00	2.430	3.69	1.01	0.0	100.0	0.0	5.97	0.88	0.83	0.83	1.79	2562	339	6	0	0	0	0	logfile

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