Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3JCF	6551	2024-09-26	2015-12-11	3.8	4.02	—	3.9	0.004	1.03	0.0	0.04	6.81	0.00	2.057	8.41	0.00	4.6	95.4	0.0	-1.63	0.74	0.81	2.11	3.9	0.003	0.69	0.0	0.04	12.59	0.00	1.971	11.37	1.91	3.3	96.7	0.0	1.65	0.69	0.75	0.85	1.75	14228	1745	10	0	13	0	0	logfile
✔	7K4E	22666	2024-09-28	2020-09-15	4.34	5.29	—	4.9	0.009	1.08	0.0	0.06	11.50	0.01	2.286	5.83	0.56	8.2	91.8	0.0	-4.96	0.63	0.76	—	4.9	0.003	0.81	0.0	0.04	12.49	0.00	2.306	11.22	0.05	6.3	93.7	0.0	-1.46	0.98	0.64	0.76	—	20119	2480	8	0	5	0	0	logfile
✔	6o1D	0586	2024-09-25	2019-02-19	3.395	3.57	—	3.5	0.010	0.95	1.0	0.05	28.02	0.01	2.317	2.17	0.00	3.4	96.6	0.0	-4.72	0.79	0.87	4.13	3.5	0.004	0.58	0.0	0.03	27.57	0.00	2.497	6.38	0.64	2.1	97.9	0.0	0.38	0.52	0.79	0.88	2.87	11982	761	10	290	0	0	0	logfile
✔	7V90	31806	2024-09-26	2021-08-24	3.5	3.21	3.42	3.5	0.005	0.73	3.0	0.04	26.09	0.00	2.219	8.45	4.01	4.7	94.8	0.5	-0.16	0.66	0.78	2.00	3.4	0.003	0.52	0.0	0.03	27.15	0.00	2.381	6.36	0.77	2.9	97.1	0.0	2.66	1.11	0.72	0.83	2.18	12148	781	10	290	0	0	0	logfile
✔	7WSo	32762	2024-09-23	2022-01-30	3.03	3.25	—	3.3	0.014	1.29	0.0	0.07	10.67	0.01	2.351	3.25	0.85	8.7	91.3	0.0	-2.93	0.63	0.81	3.97	3.2	0.003	0.63	0.0	0.04	14.02	0.00	2.534	3.25	2.41	3.1	96.9	0.0	-0.34	1.24	0.66	0.84	2.95	6204	780	4	0	0	0	0	logfile
✔	7XVG	33486	2024-09-24	2022-05-23	3.6	3.89	—	3.8	0.004	0.73	0.0	0.05	14.26	0.00	2.074	12.92	0.28	5.9	94.0	0.1	-0.97	0.74	0.78	1.82	3.8	0.003	0.70	0.0	0.04	16.27	0.00	2.380	8.90	2.90	5.0	95.0	0.0	-0.61	0.51	0.74	0.77	1.30	6438	794	2	0	0	0	0	logfile
✔	7AHC	11782	2024-09-24	2020-09-24	3.3	3.39	3.29	3.4	0.008	0.61	0.0	0.04	15.79	0.00	2.141	13.60	0.11	8.5	91.5	0.0	-4.17	0.67	0.79	2.74	3.4	0.003	0.70	0.0	0.04	16.80	0.00	2.528	8.41	2.79	3.7	96.3	0.0	0.01	1.22	0.69	0.84	1.95	8170	1064	4	0	0	0	0	logfile
✔	7EW0	31343	2024-09-25	2021-05-24	3.42	4.10	—	4.1	0.003	0.63	0.0	0.04	14.14	0.00	2.087	6.86	0.71	2.9	97.1	0.0	-1.47	0.59	0.76	1.95	4.1	0.003	0.60	0.0	0.04	16.47	0.00	2.521	5.02	3.05	3.0	97.0	0.0	0.04	0.45	0.61	0.80	1.87	8987	1142	6	0	1	0	0	logfile
✔	6QPC	4613	2024-09-25	2019-02-13	3.5	3.65	3.34	3.6	0.009	1.01	0.0	0.20	15.20	0.01	2.021	5.70	0.22	2.5	97.5	0.0	-3.36	0.60	0.75	2.31	3.6	0.024	0.94	0.0	0.04	16.81	0.01	2.288	10.44	2.86	3.2	96.8	0.0	0.98	0.60	0.62	0.76	2.17	9140	1154	4	0	6	0	0	logfile
✔	7Y65	33634	2024-09-25	2022-06-18	3.2	3.41	3.19	3.4	0.003	0.59	0.0	0.15	14.43	0.01	2.183	8.62	0.85	3.2	96.7	0.1	0.35	0.61	0.70	1.73	3.4	0.005	0.71	0.0	0.05	16.20	0.00	2.431	7.07	2.44	4.3	95.7	0.0	0.18	0.57	0.66	0.78	2.17	8721	1109	7	0	1	0	0	logfile
✔	8F0U	28781	2024-09-29	2022-11-04	3.1	3.37	3.22	3.6	0.031	1.77	0.0	0.13	9.86	0.01	2.388	0.67	0.00	0.8	99.2	0.0	0.72	0.31	0.31	0.91	3.5	0.003	0.63	0.0	0.05	14.17	0.00	2.204	5.16	1.49	5.0	95.0	0.0	-0.77	2.15	0.54	0.68	1.69	72240	4848	36	0	0	0	36756	logfile
✔	7EW4	31347	2024-09-25	2021-05-24	3.2	3.38	—	3.4	0.003	0.51	0.0	0.04	13.41	0.00	2.237	7.77	0.00	2.0	98.0	0.0	1.05	0.67	0.74	2.41	3.4	0.003	0.54	0.0	0.04	15.05	0.00	2.477	6.59	1.67	2.7	97.3	0.0	1.06	0.95	0.68	0.80	2.28	8929	1145	6	0	3	0	0	logfile
✔	6PQU	20453	2024-09-25	2019-07-10	3.3	3.76	—	3.7	0.008	0.90	2.0	0.05	23.51	0.00	1.970	23.39	1.21	2.4	97.4	0.2	-4.67	0.69	0.72	1.88	3.7	0.004	0.67	0.0	0.04	23.44	0.00	1.948	11.35	2.29	7.0	93.0	0.0	-0.77	0.49	0.69	0.73	1.30	10004	936	10	124	6	0	0	logfile
✔	6oRP	20177	2024-09-28	2019-04-30	4.4	4.68	4.45	4.7	0.010	1.62	7.0	0.10	18.02	0.02	1.539	13.72	1.05	15.8	83.7	0.4	-4.88	0.46	0.61	—	4.7	0.005	1.00	0.0	0.06	14.04	0.01	2.364	14.36	0.00	15.4	84.5	0.0	-3.51	0.93	0.60	0.82	—	19972	2397	47	0	98	0	0	logfile
✔	6Z5U	11082	2024-09-28	2020-05-27	3.9	4.52	—	38.0	0.021	1.88	10.0	0.11	12.69	0.01	0.901	4.89	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.1	0.003	0.70	0.0	0.04	14.26	0.00	2.078	9.20	1.38	3.8	96.1	0.0	0.52	1.51	0.27	0.14	0.60	17880	2334	14	0	4	0	0	logfile
✔	7P1K	13163	2024-09-24	2021-07-01	3.64	3.10	3.45	3.2	0.014	1.12	0.0	0.05	16.20	0.02	2.023	12.65	4.61	4.2	95.8	0.0	-0.19	0.54	0.70	1.60	3.2	0.002	0.63	0.0	0.04	15.13	0.00	2.438	6.22	3.89	4.8	95.2	0.0	1.68	1.24	0.56	0.70	1.85	6892	866	4	0	12	0	0	logfile
✔	6WB0	21583	2024-09-24	2020-03-26	4.2	4.26	—	4.2	0.002	0.51	0.0	0.04	16.40	0.00	2.131	11.89	0.81	4.1	95.9	0.0	-4.46	0.79	0.74	—	4.1	0.004	0.65	0.0	0.04	16.80	0.00	2.092	9.58	0.00	5.6	94.4	0.0	-1.79	1.29	0.81	0.79	—	8518	948	4	77	0	0	0	logfile
✔	7XD4	33135	2024-09-24	2022-03-26	3.89	4.13	—	3.8	0.003	0.59	0.0	0.03	23.99	0.00	1.880	1.73	0.00	0.0	0.0	0.0	—	0.85	0.73	—	3.8	0.007	0.81	0.0	0.04	24.53	0.01	1.749	16.18	0.00	0.0	0.0	0.0	—	1.91	0.87	0.79	—	9062	0	2	423	28	0	0	logfile
✔	6P46	20244	2024-09-25	2019-05-26	3.5	3.66	3.31	3.6	0.009	1.43	1.0	0.08	16.16	0.01	1.317	25.94	3.71	7.0	92.7	0.3	-5.45	0.58	0.70	1.36	3.6	0.004	0.79	0.0	0.04	17.49	0.01	2.246	11.98	3.39	7.5	92.5	0.0	-2.27	0.75	0.58	0.70	1.37	11378	1380	4	0	2	0	0	logfile
✔	7K4C	22664	2024-09-28	2020-09-15	3.78	4.46	—	4.3	0.009	1.09	0.0	0.06	12.36	0.01	2.296	5.28	0.00	11.4	88.5	0.2	-5.34	0.74	0.80	1.36	4.3	0.003	0.86	0.0	0.04	15.36	0.00	2.482	10.74	1.89	7.9	92.1	0.0	-1.60	0.92	0.73	0.78	1.00	19744	2444	8	0	7	0	0	logfile

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