Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8RFB	19117	2024-09-23	2023-12-12	4.01	4.26	4.04	4.2	0.015	1.68	0.0	0.10	11.24	0.01	2.144	5.97	2.04	2.7	97.3	0.0	0.42	0.73	0.77	—	4.2	0.004	0.70	0.0	0.05	13.16	0.00	1.806	9.62	0.00	3.4	96.6	0.0	0.08	0.92	0.72	0.79	—	4632	597	1	0	0	0	0	logfile
✔	7KoG	22975	2024-09-28	2020-11-09	4.25	3.30	—	6.0	0.005	1.03	1.0	0.04	18.29	0.00	1.580	10.26	0.70	0.5	99.5	0.0	-6.22	0.69	0.62	—	4.0	0.003	0.71	0.0	0.04	16.84	0.00	2.401	9.00	0.00	0.4	99.6	0.0	2.99	1.90	0.75	0.75	—	17384	2154	2	0	0	0	0	logfile
✔	7BWA	30231	2024-09-26	2020-04-14	4.9	5.10	4.70	4.8	0.004	0.77	0.0	0.05	15.31	0.00	1.970	41.05	0.00	13.4	86.6	0.0	-4.15	0.80	0.64	—	4.8	0.004	0.79	0.0	0.05	14.15	0.00	2.026	17.59	0.00	9.4	90.6	0.0	-3.09	1.67	0.79	0.60	—	11670	1444	4	0	0	0	0	logfile
✔	7MFE	23814	2024-09-24	2021-04-09	4.07	3.82	—	3.8	0.002	0.59	0.0	0.04	15.26	0.00	1.387	18.00	0.41	6.6	93.4	0.0	-2.56	0.63	0.64	—	3.8	0.005	0.78	0.0	0.04	15.38	0.01	1.888	14.69	0.00	7.2	92.8	0.0	-1.11	0.58	0.62	0.64	—	6844	859	4	0	2	0	0	logfile
✔	8SL6	40574	2024-09-30	2023-04-21	4.3	4.65	4.38	4.4	0.005	0.71	0.0	0.04	11.90	0.00	2.128	11.89	0.00	4.5	95.5	0.0	-1.39	0.70	0.79	—	4.4	0.002	0.56	0.0	0.04	11.65	0.00	2.517	5.72	0.00	3.7	96.3	0.0	2.20	1.79	0.69	0.78	—	23954	3634	4	0	0	0	0	logfile
✔	8SLi	40578	2024-09-29	2023-04-21	4.9	5.15	4.96	4.9	0.004	0.57	0.0	0.04	9.81	0.00	2.188	11.13	0.00	6.5	93.5	0.0	-2.65	0.70	0.80	—	4.9	0.003	0.58	0.0	0.04	9.99	0.00	2.421	5.62	0.00	7.6	92.4	0.0	0.55	1.67	0.71	0.81	—	20996	3576	8	0	8	0	0	logfile
✔	6R23	4708	2024-09-23	2019-03-15	4.9	4.57	—	4.6	0.006	1.07	0.0	0.05	16.56	0.01	2.332	7.52	0.00	7.9	92.1	0.0	-4.61	0.60	0.75	—	4.6	0.003	0.70	0.0	0.03	16.71	0.00	2.619	6.54	0.00	6.7	93.3	0.0	0.80	3.40	0.60	0.73	—	1518	182	2	0	0	0	0	logfile
✔	8CTJ	26992	2024-09-23	2022-05-15	4.74	4.27	4.78	5.3	0.005	0.92	0.0	0.05	14.67	0.01	2.233	6.13	0.00	4.6	95.4	0.0	-0.72	0.43	0.48	—	4.2	0.003	0.72	0.0	0.04	14.01	0.00	2.490	13.00	0.00	4.6	95.4	0.0	0.42	1.80	0.50	0.59	—	3312	401	2	0	1	0	0	logfile
✔	8SLE	40577	2024-09-28	2023-04-21	4.3	4.73	4.56	4.2	0.005	0.90	0.0	0.05	5.48	0.00	1.914	8.93	0.00	6.1	93.9	0.0	-1.98	0.62	0.61	—	4.2	0.005	0.72	0.0	0.04	5.77	0.00	2.437	3.38	0.00	9.0	91.0	0.0	-1.03	1.44	0.62	0.68	—	17388	3468	4	0	0	0	0	logfile
✔	6PZB	20533	2024-09-24	2019-07-31	4.55	4.69	—	4.5	0.009	1.24	0.0	0.06	8.37	0.01	2.231	3.11	0.00	5.9	94.1	0.0	-3.87	0.62	0.76	—	4.5	0.004	0.71	0.0	0.04	8.84	0.00	2.526	6.86	0.00	6.3	93.7	0.0	0.83	0.59	0.64	0.78	—	7747	1357	1	0	0	0	0	logfile
✔	8T1L	40971	2024-09-24	2023-06-02	4.83	5.18	4.88	4.8	0.003	0.80	0.0	0.04	12.13	0.00	2.161	9.56	0.00	11.4	88.5	0.1	-3.93	0.79	0.75	—	4.8	0.005	0.89	0.0	0.05	12.00	0.01	2.284	18.01	0.00	16.3	83.7	0.0	-1.97	0.70	0.80	0.79	—	49460	7823	26	0	20	0	0	logfile
✔	9BER	44482	2024-09-28	2024-04-16	4.1	4.97	4.17	4.1	0.005	0.83	1.0	0.06	16.15	0.01	1.899	5.81	0.24	7.4	92.5	0.1	-2.06	0.83	0.81	—	4.2	0.012	0.73	0.0	0.05	12.72	0.01	2.398	13.27	0.00	8.1	91.9	0.0	-1.66	0.81	0.84	0.85	—	20350	2416	36	0	100	0	0	logfile
✔	8RK4	19259	2024-09-24	2023-12-23	4.74	6.78	6.17	3.7	0.003	0.72	0.0	0.05	11.12	0.00	0.920	21.20	0.00	4.0	95.7	0.3	-1.38	0.94	0.75	—	3.8	0.002	0.65	0.0	0.04	11.91	0.00	2.570	9.10	0.00	4.0	95.7	0.3	-0.96	0.95	0.94	0.72	—	8373	1119	3	0	0	0	0	logfile
✔	9BRQ	44840	2024-09-27	2024-05-11	4.3	4.97	4.53	4.4	0.004	0.83	0.0	0.05	13.74	0.01	2.339	3.94	0.15	5.5	94.4	0.1	-0.58	0.72	0.77	—	4.4	0.003	0.71	0.0	0.04	13.94	0.00	2.311	14.49	0.00	5.0	94.9	0.1	0.30	0.58	0.73	0.83	—	67167	8590	33	0	0	0	0	logfile
✔	6GDG	4390	2024-09-24	2018-04-23	4.11	3.92	—	4.0	0.008	1.10	0.0	0.06	13.00	0.00	2.449	0.87	2.07	4.9	94.6	0.5	-3.15	0.76	0.78	—	4.0	0.003	0.69	0.0	0.04	13.02	0.00	2.494	12.41	0.00	3.8	96.2	0.0	0.16	0.81	0.77	0.75	—	7223	997	6	0	1	0	0	logfile
✔	9C4D	45182	2024-09-26	2024-06-04	4.17	4.62	4.15	4.3	0.002	0.48	0.0	0.03	22.14	0.00	2.085	9.43	2.34	0.7	99.3	0.0	4.02	0.82	0.73	—	4.3	0.003	0.59	0.0	0.04	22.97	0.00	1.390	10.74	0.00	1.4	98.6	0.0	2.57	1.89	0.83	0.77	—	12493	1120	18	154	16	0	0	logfile
✔	8ZL9	38897	2024-09-24	2024-05-17	4.36	4.49	4.31	4.4	0.005	1.01	1.0	0.06	14.25	0.01	2.243	9.31	0.14	7.6	92.0	0.4	-2.34	0.56	0.51	—	4.4	0.003	0.70	0.0	0.05	14.30	0.01	2.400	16.62	0.00	8.0	91.9	0.1	-1.94	1.26	0.57	0.52	—	6644	838	5	0	0	0	0	logfile
✔	8URE	42491	2024-09-24	2023-10-25	4.4	3.48	4.69	5.0	0.009	1.42	0.0	0.06	6.50	0.01	2.628	0.00	0.00	1.3	98.7	0.0	-0.01	0.78	0.79	—	4.8	0.004	0.53	0.0	0.03	4.26	0.00	2.616	0.83	0.00	3.0	97.0	0.0	0.95	0.65	0.81	0.82	—	8896	1792	8	0	0	0	0	logfile
✔	8PQ5	17820	2024-09-24	2023-07-10	4.4	4.07	4.39	7.3	0.003	0.69	0.0	0.05	14.88	0.00	2.133	25.49	0.00	9.2	90.8	0.0	-1.84	0.79	0.69	—	7.2	0.003	0.76	0.0	0.05	14.86	0.01	2.389	22.57	0.00	9.6	90.4	0.0	-2.20	1.08	0.80	0.70	—	6300	782	5	0	2	0	0	logfile
✔	7Q0A	13742	2024-09-30	2021-10-14	4.8	5.34	—	4.9	0.003	0.58	0.0	0.05	11.43	0.00	2.216	4.45	0.34	3.9	96.1	0.1	-0.52	0.78	0.63	—	4.9	0.003	0.64	0.0	0.04	11.60	0.00	2.402	10.99	0.00	2.9	97.1	0.0	0.26	0.86	0.83	0.75	—	25125	3193	19	0	49	0	0	logfile

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