Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JSH	22454	2024-09-24	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.005	1.21	0.0	0.05	13.28	0.00	2.348	9.55	0.00	27.4	72.4	0.3	-5.22	6.13	0.73	0.61	—	7916	1904	8	15	0	0	0	logfile
✔	7U15	26278	2024-09-24	2022-02-19	3.0	3.14	—	3.3	0.006	1.22	0.0	0.12	17.23	0.01	1.886	12.16	3.44	3.8	96.2	0.0	-6.51	0.26	0.64	1.55	3.2	0.003	0.73	0.0	0.11	16.12	0.00	2.335	10.54	4.50	16.8	83.2	0.0	-5.22	0.92	0.27	0.69	2.98	6684	405	6	0	12	0	3255	logfile
✔	8HiA	34813	2024-09-24	2022-11-19	4.9	4.49	2.13	9.6	0.001	0.36	0.0	0.05	15.83	0.00	2.251	1.11	2.86	12.1	87.6	0.2	-4.39	0.47	0.07	—	9.3	0.004	0.74	0.0	0.05	14.73	0.01	2.306	25.00	4.76	4.8	95.2	0.0	-5.19	12.04	0.66	0.21	—	7200	460	20	0	0	0	3660	logfile
✔	8KBY	37087	2024-09-23	2023-08-04	3.23	3.45	3.19	3.5	0.003	0.91	0.0	0.05	14.41	0.00	2.288	12.26	0.00	12.2	87.4	0.4	-4.87	0.50	0.47	2.38	3.4	0.005	1.28	1.0	0.05	15.82	0.01	2.428	9.74	6.58	18.9	80.9	0.1	-5.16	1.75	0.57	0.62	2.75	5050	830	1	0	0	0	0	logfile
✔	6N3B	9350	2024-09-23	2018-11-14	3.8	3.75	—	4.0	0.010	1.21	0.0	0.05	11.40	0.01	2.253	20.70	0.00	13.7	86.3	0.0	-5.17	0.41	0.71	2.90	4.0	0.004	0.79	0.0	0.04	16.16	0.01	2.615	19.57	2.26	8.5	91.5	0.0	-5.14	0.81	0.39	0.67	1.40	2735	385	10	0	0	0	0	logfile
✔	7YAT	33719	2024-09-23	2022-06-28	2.2	2.33	1.39	2.3	0.009	1.06	0.0	0.06	14.84	0.00	2.267	9.86	0.00	4.3	95.7	0.0	-4.79	0.61	0.88	7.98	2.3	0.002	0.72	0.0	0.05	15.28	0.00	2.674	12.57	0.26	0.5	99.5	0.0	-5.12	0.36	0.63	0.90	7.32	4129	600	45	0	0	25	0	logfile
✔	6N3A	9349	2024-09-23	2018-11-14	3.3	3.44	—	3.6	0.008	1.14	0.0	0.05	14.53	0.01	2.469	17.25	0.00	8.9	91.1	0.0	-5.23	0.49	0.76	3.75	3.6	0.004	0.86	0.0	0.04	19.07	0.00	2.587	12.42	4.09	8.6	91.4	0.0	-5.12	1.63	0.52	0.79	2.66	4310	600	20	0	0	0	0	logfile
✔	7YL7	33903	2024-09-23	2022-07-25	3.3	3.54	3.17	3.5	0.009	0.87	0.0	0.04	14.87	0.00	2.196	22.56	0.00	4.9	95.1	0.0	-5.16	0.45	0.78	4.82	3.4	0.006	0.63	0.0	0.04	14.00	0.00	2.559	4.80	2.16	7.1	92.9	0.0	-5.10	0.74	0.44	0.77	5.41	2988	402	12	0	0	0	0	logfile
✔	7UMQ	26607	2024-09-23	2022-04-07	3.29	3.64	3.16	4.2	0.023	2.11	0.0	0.10	9.85	0.01	2.540	2.21	0.00	10.0	90.0	0.0	-3.35	0.51	0.74	5.90	3.9	0.004	0.83	0.0	0.05	14.59	0.00	2.614	14.90	6.41	10.3	89.7	0.0	-5.09	3.37	0.42	0.75	4.52	4380	620	10	0	0	0	0	logfile
✔	5o3T	3743	2024-09-25	2017-05-24	3.4	3.55	3.25	4.0	0.007	0.92	0.0	0.06	10.15	0.01	2.301	14.44	1.56	14.1	85.9	0.0	-6.47	0.53	0.63	2.13	3.5	0.004	0.70	0.0	0.05	13.33	0.00	2.459	11.09	2.03	14.9	85.1	0.0	-5.04	1.53	0.49	0.70	3.29	11360	730	10	0	0	0	5790	logfile
✔	6N37	9339	2024-09-23	2018-11-14	3.8	3.51	—	4.2	0.009	1.42	0.0	0.06	16.98	0.01	2.399	13.15	0.00	14.7	85.3	0.0	-5.92	0.51	0.77	3.18	3.6	0.006	1.63	1.0	0.06	18.49	0.00	2.558	22.11	3.60	13.5	86.5	0.0	-5.04	0.88	0.52	0.78	2.71	2580	360	10	0	0	0	0	logfile
✔	6iC3	4452	2024-09-23	2018-12-02	3.3	4.00	—	3.9	0.010	1.26	0.0	0.06	16.17	0.01	2.017	9.22	1.39	16.9	83.1	0.0	-5.61	0.76	0.80	1.39	4.2	0.004	0.90	0.0	0.05	17.46	0.00	2.521	13.43	1.56	9.1	90.9	0.0	-5.03	1.23	0.71	0.76	1.30	5472	728	8	0	0	0	0	logfile
✔	8AZ0	15728	2024-09-23	2022-09-05	3.4	3.10	3.36	3.6	0.006	0.74	0.0	0.05	8.05	0.01	2.611	0.94	0.00	7.7	92.3	0.0	-4.46	0.50	0.87	5.60	3.6	0.003	0.51	0.0	0.04	11.54	0.00	2.272	0.24	2.08	5.8	94.2	0.0	-5.01	0.50	0.46	0.85	4.92	2180	280	20	0	10	0	0	logfile
✔	6H3J	0134	2024-09-28	2018-07-18	3.7	3.83	—	3.7	0.007	0.87	0.0	0.05	10.17	0.00	2.025	43.38	0.05	23.8	76.2	0.0	-6.63	0.77	0.85	3.89	3.7	0.002	0.60	0.0	0.04	13.57	0.00	2.264	50.41	2.03	17.9	82.1	0.0	-5.00	2.68	0.77	0.86	2.67	20301	2511	3	0	0	0	212	logfile
✔	6HUD	0274	2024-09-23	2018-10-06	4.0	4.06	—	4.3	0.007	1.12	0.0	0.07	8.28	0.01	2.020	5.62	0.00	8.2	91.8	0.0	-5.06	0.59	0.76	—	4.3	0.005	0.84	0.0	0.05	13.46	0.00	2.547	16.30	1.52	10.7	89.3	0.0	-5.00	1.48	0.57	0.79	—	2905	385	5	0	0	0	0	logfile
✔	6oKS	20103	2024-09-26	2019-04-15	4.2	4.44	—	4.3	0.008	1.15	0.0	0.05	17.36	0.01	2.299	5.88	9.80	18.3	81.7	0.0	-5.50	0.78	0.81	—	4.3	0.004	0.83	0.0	0.04	14.39	0.01	2.410	12.21	0.00	15.8	84.2	0.0	-5.00	2.21	0.79	0.82	—	13244	1610	14	0	0	0	0	logfile
✔	7LQi	23487	2024-09-24	2021-02-13	3.5	3.92	—	3.9	0.016	1.40	0.0	0.03	20.42	0.00	2.242	22.86	5.00	0.0	100.0	0.0	-3.42	0.62	0.78	4.80	3.9	0.051	2.76	0.0	0.14	23.87	0.01	2.042	118.35	19.67	24.2	75.8	0.0	-4.99	1.41	0.64	0.85	3.68	8400	800	100	0	0	0	0	logfile
✔	7M61	23686	2024-09-23	2021-03-25	3.8	3.83	—	4.1	0.005	1.02	0.0	0.08	12.79	0.00	2.218	22.02	0.00	14.3	85.7	0.0	-4.63	0.49	0.73	2.45	3.9	0.003	0.78	0.0	0.05	14.84	0.00	2.325	17.67	2.56	13.3	86.7	0.0	-4.99	1.30	0.49	0.74	2.52	1690	230	20	0	10	0	0	logfile
✔	7C1D	30269	2024-09-23	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	18.87	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.003	0.67	0.0	0.05	15.65	0.00	2.485	13.97	9.90	19.0	81.0	0.0	-4.97	2.81	0.39	0.75	3.89	2034	306	6	0	0	0	0	logfile
✔	6oSM	20186	2024-09-23	2019-05-01	3.4	3.31	—	3.4	0.012	1.45	0.0	0.09	14.06	0.00	2.183	28.91	14.88	34.5	65.5	0.0	-5.34	0.46	0.74	2.68	3.4	0.004	1.05	0.0	0.06	15.05	0.00	2.533	19.00	10.24	23.3	76.7	0.0	-4.94	1.14	0.44	0.74	3.43	4100	600	10	0	0	0	0	logfile

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